These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 584 fasta sequence [TTAGTTACTTTAAATTTGGTACCAGGTTCAGAAGTATATGGTGAAAAAAGAATAAGTGTGGAGGGTGAAAATGGTGAAAAAATTGAATATAGAGTTTGGAATCCTTTTAGATCAAAGTTAGCTGCTGCTATACTTGGAGGAGTAGATCAAATTCATATGCCTCCTGGAAGTAAAGTTTTATATTTAGGTGCTGCATCTGGAACTACAGTGTCGCATGTAGCAGATGTTGTTGGACCNNAAGGACTTGTATATGCTGTAGAATTTTCTCATAGATCAGGCAGAGATCTTATAAATGTTGCTAAGAAACGAACAAATATTATTCCTATAATTGAAGATGCAAGACATCCTCATAAATACAGAATGCTTGTTGGAATGGTAGATACGATATTTGCTGATGTGGCACAACCTGATCAAGCCAGAATAGTAGCTCTAAATGCTCAATATTTCTTAAAGAACGGAGNNNATTTTGTTATTTCTATTAAAGCGAGTTGTATAGATTCTACAGCTCAACCTGAAGCAGTATTTGCATCGGAAGTAAAAAAATTAATTGCAGACAAATTGAAACCTCAAGAACAAATCACATT] [+] EMBL BI503779 [TTAGTTACTTTAAATTTGGTACCAGGTTCAGAAGTATATGGTGAAAAAAGAATAAGTGTGGAGGGTGAAAATGGTGAAAAAATTGAATATAGAGTTTGGAATCCTTTTAGATCAAAGTTAGCTGCTGCTATACTTGGAGGAGTAGATCAAATTCATATGCCTCCTGGAAGTAAAGTTTTATATTTAGGTGCTGCATCTGGAACTACAGTGTCGCATGTAGCAGATGTTGTTGGACCAGAAGGACTTGTATATGCTGTAGAATTTTCTCATAGATCAGGCAGAGATCTTATAAATGTTGCTAAGAAACGAACAAATATTATTCCTATAATTGAAGATGCAAGACATCCTCATAAATACAGAATGCTTGTTGGAATGGTAGATACGATATTTGCTGATGTGGCACAACCTGATCAAGCCAGAATAGTAGCTCTAAATGCTCAATATTTCTTAAAGAACGGAGGTCATTTTGTTATTTCTATTAAAGCGAGTTGTATAGATTCTACAGCTCAACCTGAAGCAGTATTTGCATCGGAAGTAAAAAAATTAATTGCAGACAAATTGAAACCTCAAGAACAAATCACATT] [+] EMBL BI515844 [ GGTGAAAAAATTGAATATAGAGTTTGGAATCCTTTTAGATCAAAGTTAGCTGCTGCTATACTTGGAGGAGTAGATCAAATTCATATGCCTCCTGGAAGTAAAGTTTTATATTTAGGTGCTGCATCTGGAACTACAGTGTCGCATGTAGCAGATGTTGTTGGACCNNAAGGACTTGTATATGCTGTAGAATTTTCTCATAGATCAGGCAGAGATCTTATAAATGTTGCTAAGAAACGAACAAATATTATTCCTATAATTGAAGATGCAAGACATCCTCATAAATACAGAATGCTTGTTGGAATGGTAGATACGATATTTGCTGATGTGGCACAACCTGATCAAGCCAGAATAGTAGCTCTAAATGCTCAATATTTCTTAAAGAACGGAGNNNATTTTGTTATTTCTATTAAAGCGAGTTGTATAGATTCTACAGCTCAACCTGAAGCAGTATTTGCATCGGAAGTAAAAAAATTAATTGCAGACAAATTGAAACCTCAA ] consensusID : consensus_816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [ATGGTGAAAAAAGAATAAGTGTGGAGATCAAAGTTAGCTGCTGCTATACTTGGAGGAGTAGATCAAATTCATATGCCTCCTGGAAGTAAAGTTTTATATTTAGGTGCTGCATCTGGAACTACAGTGTCGCATGTAGCAGATGTTGTTGGACCAGAAGGACTTGTATATGCTGTAGAATTTTCTCATAGATCAGGCAGAGATCTTATAAATGTTGCTAAGAAACGAACAAATATTATTCCTATAATTGAAGATGCAAGACATCCTCATAAATACAGAATGCTTGTTGGAATGGTAGATACGATATTTGCTGATGTGGCACAACCTGATCAAGCCAGAATAGTAGCTCTAAATGCTCAATATTTCTTAAAGAACGGAGGTCATTTTGTTATTTCTATTAAAGCGAGTTGTATAGATTCTACAGCTCAACCTGAAGCAGTATTTGCATCGGAAGTAAAAAAATTAATTGCAGACAAATTGAAACCTCAAGAACAAATCACATTGGAACCATATGAAAGAGATCACGC] [+] EMBL BI506236 [ATGGTGAAAAAAGAATAAGTGTGGAGATCAAAGTTAGCTGCTGCTATACTTGGAGGAGTAGATCAAATTCATATGCCTCCTGGAAGTAAAGTTTTATATTTAGGTGCTGCATCTGGAACTACAGTGTCGCATGTAGCAGATGTTGTTGGACCAGAAGGACTTGTATATGCTGTAGAATTTTCTCATAGATCAGGCAGAGATCTTATAAATGTTGCTAAGAAACGAACAAATATTATTCCTATAATTGAAGATGCAAGACATCCTCATAAATACAGAATGCTTGTTGGAATGGTAGATACGATATTTGCTGATGTGGCACAACCTGATCAAGCCAGAATAGTAGCTCTAAATGCTCAATATTTCTTAAAGAACGGAGGTCATTTTGTTATTTCTATTAAAGCGAGTTGTATAGATTCTACAGCTCAACCTGAAGCAGTATTTGCATCGGAAGTAAAAAAATTAATTGCAGACAAATTGAAACCTCAAGAACAAATCACATTGGAACCATATGAAAGAGATCACGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_816#0 TTAGTTACTTTAAATTTGGTACCAGGTTCAGAAGTATATGGTGAAAAAAGAATAAGTGTG 60 consensus_816#1 ------------------------------------------------------------ consensus_816#0 GAGGGTGAAAATGGTGAAAAAATTGAATATAGAGTTTGGAATCCTTTTAGATCAAAGTTA 120 consensus_816#1 ----------ATGGTGAAAAAA--GAATA---AGTGTGGA---------GATCAAAGTTA 36 ************ ***** *** **** *********** consensus_816#0 GCTGCTGCTATACTTGGAGGAGTAGATCAAATTCATATGCCTCCTGGAAGTAAAGTTTTA 180 consensus_816#1 GCTGCTGCTATACTTGGAGGAGTAGATCAAATTCATATGCCTCCTGGAAGTAAAGTTTTA 96 ************************************************************ consensus_816#0 TATTTAGGTGCTGCATCTGGAACTACAGTGTCGCATGTAGCAGATGTTGTTGGACCNNAA 240 consensus_816#1 TATTTAGGTGCTGCATCTGGAACTACAGTGTCGCATGTAGCAGATGTTGTTGGACCAGAA 156 ******************************************************** ** consensus_816#0 GGACTTGTATATGCTGTAGAATTTTCTCATAGATCAGGCAGAGATCTTATAAATGTTGCT 300 consensus_816#1 GGACTTGTATATGCTGTAGAATTTTCTCATAGATCAGGCAGAGATCTTATAAATGTTGCT 216 ************************************************************ consensus_816#0 AAGAAACGAACAAATATTATTCCTATAATTGAAGATGCAAGACATCCTCATAAATACAGA 360 consensus_816#1 AAGAAACGAACAAATATTATTCCTATAATTGAAGATGCAAGACATCCTCATAAATACAGA 276 ************************************************************ consensus_816#0 ATGCTTGTTGGAATGGTAGATACGATATTTGCTGATGTGGCACAACCTGATCAAGCCAGA 420 consensus_816#1 ATGCTTGTTGGAATGGTAGATACGATATTTGCTGATGTGGCACAACCTGATCAAGCCAGA 336 ************************************************************ consensus_816#0 ATAGTAGCTCTAAATGCTCAATATTTCTTAAAGAACGGAGNNNATTTTGTTATTTCTATT 480 consensus_816#1 ATAGTAGCTCTAAATGCTCAATATTTCTTAAAGAACGGAGGTCATTTTGTTATTTCTATT 396 **************************************** ***************** consensus_816#0 AAAGCGAGTTGTATAGATTCTACAGCTCAACCTGAAGCAGTATTTGCATCGGAAGTAAAA 540 consensus_816#1 AAAGCGAGTTGTATAGATTCTACAGCTCAACCTGAAGCAGTATTTGCATCGGAAGTAAAA 456 ************************************************************ consensus_816#0 AAATTAATTGCAGACAAATTGAAACCTCAAGAACAAATCACATT---------------- 584 consensus_816#1 AAATTAATTGCAGACAAATTGAAACCTCAAGAACAAATCACATTGGAACCATATGAAAGA 516 ******************************************** consensus_816#0 -------- consensus_816#1 GATCACGC 524 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |