These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_820#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 919 fasta sequence [TTTATATTACTATTATCAGTGAATCGGTCGATGTTCTTACTTTCGTCGGACAAAAAAGAAAGAAATGCGTAAAAACGCTTTATATAAAGTAGTGATCTAAAACGGTAAGAATCCTAAGCTGCACTTAAGGACTAATACCCGTCTTCTACACGTTCTCTTAACCATTCAAAAAATGTCGGGTATCACCCTAATCCGATTAGCGTTGAAAACCCTTAGCCCTAGAAACGGTATTATGTCATTTTAATGATTTTTTTACTCCTTTACTCCATTTTCACTACATTTTGTAATTCGGTTATACGTTAACCGATCATTGTCACAACAATATTATTTGTTTGAACGCGTATAAGATGGTTATCAACGCGCAACGTAATCATGAAAAAGACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTACACGCGAGTTTTATACGATTATACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAGTTTCGCGCATGAATATATCGAGGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAATAGTAGTAATAGTAATAATAATAGTAGTAATAGTAGTAGTAGTATTTGGAGACTTAGCTGACTAACTTATACTTTAAAGTACGATCGTCGAAAAACATGATTTAACAATTATGTATTCGTCATCATCGCAAGATTACGTCATACGACACGCGTTTTAATGGAAACACTGATTTTTCCTTTCCGTTTCTCTTTTATTACTATAGTCTTAAATCATTCCATAAGGATAAATATTTTTCGTTACGTTCTTTCATAGGATGTTACCTTCTTTTGCACGTTTGAATTTAATATTTTTTTTGATGGTA] [+] EMBL BI946464 [TTTATATTACTATTATCAGTGAATCGGTCGATGTTCTTACTTTCGTCGGACAAAAAAGAAAGAAATGCGTAAAAACGCTTTATATAAAGTAGTGATCTAAAACGGTAAGAATCCTAAGCTGCACTTAAGGACTAATACCCGTCTTCTACACGTTCTCTTAACCATTCAAAAAATGTCGGGTATCACCCTAATCCGATTAGCGTTGAAAACCCTTAGCCCTAGAAACGGTATTATGTCATTTTAATGATTTTTTTACTCCTTTACTCCATTTTCACTACATTTTGTAATTCGGTTATACGTTAACCGATCATTGTCACAACAATATTATTTGTTTGAACGCGTATAAGATGGTTATCAACGCGCAACGTAATCATGAAAAAGACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTACACGCGAGTTTTATACGATTATACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAGTTTCGCGCATGAATATATCGAGGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAATAGTAGTAGTAGTAGTAGTAGTAGTAGT GTAGTAGTAGTAGTA AATAGTAGTAATAGTAATAATA AATAGTAGTA ] [-] EMBL BI506152 [ CGCGTATAAGATGGTTATCAACGCGCAACGTAATCATGAAAAAGACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTACACGCGAGTTTTATACGATTATACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAGTTTCGCGCATGAATATATCGAGGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAATAGTAGTAGTAATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAATAGTAGTAATAGTAATAATAATAGTAGTAATAGTAGTAGTAGTATTTGGAGACTTAGCTGACTAACTTATACTTTAAAGTACGATCGTCGAAAAACATGATTTAACAATTATGTATTCGTCATCATCGCAAGATTACGTCATACGACACGCGTTTTAATGGAAACACTGATTTTTCCTTTCCGTTTCTCTTTTATTACTATAGTCTTAAATCATTCCATAAGGATAAATATTTTTCGTTACGTTCTTTCATAGGATGTTACCTTCTTTTGCACGTTTGAATTTAATATTTTTTTTGATGGTA] consensusID : consensus_820#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [ACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTACACGCGAGTTTTATACGATTATACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAGTTTCGCGCATGAATATATCGAGGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAATAGTAGTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGTAGTAGTAGTAGTAATAGTAGTAATAGTAATAATAATAGTAGTAATAGTAGTAGTAGTATTTGGAGACTTAGCTGACTAA] [-] EMBL BI507033 [ACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTACACGCGAGTTTTATACGATTATACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAGTTTCGCGCATGAATATATCGAGGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAATAGTAGTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGTAGTAGTAGTAGTAATAGTAGTAATAGTAATAATAATAGTAGTAATAGTAGTAGTAGTATTTGGAGACTTAGCTGACTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_820#0 TTTATATTACTATTATCAGTGAATCGGTCGATGTTCTTACTTTCGTCGGACAAAAAAGAA 60 consensus_820#1 ------------------------------------------------------------ consensus_820#0 AGAAATGCGTAAAAACGCTTTATATAAAGTAGTGATCTAAAACGGTAAGAATCCTAAGCT 120 consensus_820#1 ------------------------------------------------------------ consensus_820#0 GCACTTAAGGACTAATACCCGTCTTCTACACGTTCTCTTAACCATTCAAAAAATGTCGGG 180 consensus_820#1 ------------------------------------------------------------ consensus_820#0 TATCACCCTAATCCGATTAGCGTTGAAAACCCTTAGCCCTAGAAACGGTATTATGTCATT 240 consensus_820#1 ------------------------------------------------------------ consensus_820#0 TTAATGATTTTTTTACTCCTTTACTCCATTTTCACTACATTTTGTAATTCGGTTATACGT 300 consensus_820#1 ------------------------------------------------------------ consensus_820#0 TAACCGATCATTGTCACAACAATATTATTTGTTTGAACGCGTATAAGATGGTTATCAACG 360 consensus_820#1 ------------------------------------------------------------ consensus_820#0 CGCAACGTAATCATGAAAAAGACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTAC 420 consensus_820#1 ---------------------ACTAACACGTTTTTTTAATTAATAGTCACTTTCTATTAC 39 *************************************** consensus_820#0 ACGCGAGTTTTATACGATTATACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAG 480 consensus_820#1 ACGCGAGTTTTATACGATTATACACTTTCATACTTCCTCACTTACTAAATGCTAAAGAAG 99 ************************************************************ consensus_820#0 TTTCGCGCATGAATATATCGAGGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAA 540 consensus_820#1 TTTCGCGCATGAATATATCGAGGATAATAGTTTCACTTTTCTCAACGTCGAAATGTTTAA 159 ************************************************************ consensus_820#0 TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTAGTAGTAGTAGT 600 consensus_820#1 TAGTAGTAGTAGTAGTAGTAGTAGTAGT---------------------GTAGTAGTAGT 198 **************************** *********** consensus_820#0 AGTAGTAGTAGTAGTAATAGTAGTAATAGTAATAATAATAGTAGTAATAGTAGTAGTAGT 660 consensus_820#1 AGTAGTAGTAGTAGTAATAGTAGTAATAGTAATAATAATAGTAGTAATAGTAGTAGTAGT 258 ************************************************************ consensus_820#0 ATTTGGAGACTTAGCTGACTAACTTATACTTTAAAGTACGATCGTCGAAAAACATGATTT 720 consensus_820#1 ATTTGGAGACTTAGCTGACTAA-------------------------------------- 280 ********************** consensus_820#0 AACAATTATGTATTCGTCATCATCGCAAGATTACGTCATACGACACGCGTTTTAATGGAA 780 consensus_820#1 ------------------------------------------------------------ consensus_820#0 ACACTGATTTTTCCTTTCCGTTTCTCTTTTATTACTATAGTCTTAAATCATTCCATAAGG 840 consensus_820#1 ------------------------------------------------------------ consensus_820#0 ATAAATATTTTTCGTTACGTTCTTTCATAGGATGTTACCTTCTTTTGCACGTTTGAATTT 900 consensus_820#1 ------------------------------------------------------------ consensus_820#0 AATATTTTTTTTGATGGTA 919 consensus_820#1 ------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |