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Apis mellifera
cluster # 838 cluster # 838       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_838#0 length = 666 sequences # 2  
consensus_838#1 length = 476 sequences # 1  

consensusID : consensus_838#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 666
fasta sequence
                              [AACGTTTGGGATTCCATGAAGGCTGAACGAGCCGGAATTCTTGCCGGTCACGATAATCGTGTGTCTTGCCTGGGCGTTACGGAGGATGGTATGGCAGTAGGGACGGGCTCATGGGACTCATTTTTGCGTATTTGGAACTAACTTGGGGTTAATCCCAAGACGTTCCTCCACAGAACCAACTACAGCCAATCAGCATACAGTATAAGCATCAAGTACCACCACTTGGCCACCGAAGTCGGCGTGTCCGTGTCCTCAACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGATCAGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCACGGTAGTAGCGGCGGTAGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACGCGTCGTCGATTTAACCTNNCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCAGCGCTTCTAGTATATGGATATACCGTCTGTTCGATATATTCGAACGTACGACTGATGATGATGATGATCGAGAAAGAAGCGTGGTGAAAGGAAGAACGACAGAACGGGGAGCAGCACCAAGGCTGACGGCCATATCTCTCCGATGTCGTGCGCGTTACTTCCTTTCTCTCCTCCCCTTTCTCAAGGA]

[+] EMBL BI516722             [AACGTTTGGGATTCCATGAAGGCTGAACGAGCCGGAATTCTTGCCGGTCACGATAATCGTGTGTCTTGCCTGGGCGTTACGGAGGATGGTATGGCAGTAGGGACGGGCTCATGGGACTCATTTTTGCGTATTTGGAACTAACTTGGGGTTAATCCCAAGACGTTCCTCCACAGAACCAACTACAGCCAATCAGCATACAGTATAAGCATCAAGTACCACCACTTGGCCACCGAAGTCGGCGTGTCCGTGTCCTCAACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGATCAGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCACGGTAGTAGCGGCGGTAGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACGCGTCGTCGATTTAACCTNNCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCAGCGCTTCTAGTA                                                                                                                                                                               ]
[+] EMBL BI513440             [                                                                                                                                                                                                                                                              AACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGATCAGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCACGGTAGTAGCGGCGGTAGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACGCGTCGTCGATTTAACCTGGCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCAGCGCTTCTAGTATATGGATATACCGTCTGTTCGATATATTCGAACGTACGACTGATGATGATGATGATCGAGAAAGAAGCGTGGTGAAAGGAAGAACGACAGAACGGGGAGCAGCACCAAGGCTGACGGCCATATCTCTCCGATGTCGTGCGCGTTACTTCCTTTCTCTCCTCCCCTTTCTCAAGGA]


>consensus_838#0 AACGTTTGGGATTCCATGAAGGCTGAACGAGCCGGAATTCTTGCCGGTCACGATAATCGT GTGTCTTGCCTGGGCGTTACGGAGGATGGTATGGCAGTAGGGACGGGCTCATGGGACTCA TTTTTGCGTATTTGGAACTAACTTGGGGTTAATCCCAAGACGTTCCTCCACAGAACCAAC TACAGCCAATCAGCATACAGTATAAGCATCAAGTACCACCACTTGGCCACCGAAGTCGGC GTGTCCGTGTCCTCAACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGATC AGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCACGGTAGTAGCGGCGGT AGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACGC GTCGTCGATTTAACCTNNCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCAG CGCTTCTAGTATATGGATATACCGTCTGTTCGATATATTCGAACGTACGACTGATGATGA TGATGATCGAGAAAGAAGCGTGGTGAAAGGAAGAACGACAGAACGGGGAGCAGCACCAAG GCTGACGGCCATATCTCTCCGATGTCGTGCGCGTTACTTCCTTTCTCTCCTCCCCTTTCT CAAGGA



consensusID : consensus_838#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence
                              [ATTTTTGCGTATTTGGAACTAACTTGGGGTTAATCCCAAGACGTTCCTCCACAGAACCAACTACAGCCAATCAGCATACAGTATAAGCATCAAGTACCACCACTTGGCCACCGAAGTCGGCGTGTCCGTGTCCTCAACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGATCAGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCAGGGTAGTAGCGGCGGTAGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACGCGTCGTCGATTTAACCTGGCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCAGCGCTTCTAGTATATGGATATACCGTCTGTTCGATATATTCGAACGTACGACTGATGATGATGATGATGATGATGATGATCGAGAAAGAAGCGTGGTGAAAGGAAGAACGACAGAA]

[+] EMBL BI509975             [ATTTTTGCGTATTTGGAACTAACTTGGGGTTAATCCCAAGACGTTCCTCCACAGAACCAACTACAGCCAATCAGCATACAGTATAAGCATCAAGTACCACCACTTGGCCACCGAAGTCGGCGTGTCCGTGTCCTCAACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGATCAGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCAGGGTAGTAGCGGCGGTAGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACGCGTCGTCGATTTAACCTGGCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCAGCGCTTCTAGTATATGGATATACCGTCTGTTCGATATATTCGAACGTACGACTGATGATGATGATGATGATGATGATGATCGAGAAAGAAGCGTGGTGAAAGGAAGAACGACAGAA]


>consensus_838#1 ATTTTTGCGTATTTGGAACTAACTTGGGGTTAATCCCAAGACGTTCCTCCACAGAACCAA CTACAGCCAATCAGCATACAGTATAAGCATCAAGTACCACCACTTGGCCACCGAAGTCGG CGTGTCCGTGTCCTCAACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGAT CAGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCAGGGTAGTAGCGGCGG TAGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACG CGTCGTCGATTTAACCTGGCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCA GCGCTTCTAGTATATGGATATACCGTCTGTTCGATATATTCGAACGTACGACTGATGATG ATGATGATGATGATGATGATCGAGAAAGAAGCGTGGTGAAAGGAAGAACGACAGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_838#0      AACGTTTGGGATTCCATGAAGGCTGAACGAGCCGGAATTCTTGCCGGTCACGATAATCGT 60
consensus_838#1      ------------------------------------------------------------
                                                                                 

consensus_838#0      GTGTCTTGCCTGGGCGTTACGGAGGATGGTATGGCAGTAGGGACGGGCTCATGGGACTCA 120
consensus_838#1      -----------------------------------------------------------A 1
                                                                                *

consensus_838#0      TTTTTGCGTATTTGGAACTAACTTGGGGTTAATCCCAAGACGTTCCTCCACAGAACCAAC 180
consensus_838#1      TTTTTGCGTATTTGGAACTAACTTGGGGTTAATCCCAAGACGTTCCTCCACAGAACCAAC 61
                     ************************************************************

consensus_838#0      TACAGCCAATCAGCATACAGTATAAGCATCAAGTACCACCACTTGGCCACCGAAGTCGGC 240
consensus_838#1      TACAGCCAATCAGCATACAGTATAAGCATCAAGTACCACCACTTGGCCACCGAAGTCGGC 121
                     ************************************************************

consensus_838#0      GTGTCCGTGTCCTCAACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGATC 300
consensus_838#1      GTGTCCGTGTCCTCAACGGAGGCGAATTACTCGCCCGGTTCACCGGAGTTGACGTTGATC 181
                     ************************************************************

consensus_838#0      AGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCACGGTAGTAGCGGCGGT 360
consensus_838#1      AGAAAGTTTGGACATCCGTTAGACAACAACAGTAAAAAGACCCAGGGTAGTAGCGGCGGT 241
                     ******************************************** ***************

consensus_838#0      AGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACGC 420
consensus_838#1      AGCGGCAGCGAATTTAAGAACGTTTTGGGTTGTGGTGGTAAAAAGGACTATCGGAAACGC 301
                     ************************************************************

consensus_838#0      GTCGTCGATTTAACCTNNCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCAG 480
consensus_838#1      GTCGTCGATTTAACCTGGCGACGTGGCAAAGTCGGCGATAAAATCACTCATGAATATCAG 361
                     ****************  ******************************************

consensus_838#0      CGCTTCTAGTATATGGATATACCGTCTGTTCGATATATTCGAACGTACGACTGATGATGA 540
consensus_838#1      CGCTTCTAGTATATGGATATACCGTCTGTTCGATATATTCGAACGTACGACTGATGATGA 421
                     ************************************************************

consensus_838#0      TGATGAT------------CGAGAAAGAAGCGTGGTGAAAGGAAGAACGACAGAACGGGG 588
consensus_838#1      TGATGATGATGATGATGATCGAGAAAGAAGCGTGGTGAAAGGAAGAACGACAGAA----- 476
                     *******            ************************************     

consensus_838#0      AGCAGCACCAAGGCTGACGGCCATATCTCTCCGATGTCGTGCGCGTTACTTCCTTTCTCT 648
consensus_838#1      ------------------------------------------------------------
                                                                                 

consensus_838#0      CCTCCCCTTTCTCAAGGA 666
consensus_838#1      ------------------
                                       




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)