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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_886#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 568 fasta sequence
[CGTGCCAATGATGAGCGACCGGGTCGATCGTTGTGCAGGGATGTGGGTCAGGCATACGCCCGAACCCCCTGGATTTTCATCTCGTCCCTTTCTCCGATAAACATAGAATATTCTCTGGAATCCTCGGAACTTTTCACAAAAAAATTTTCTTTATGACGATCATTATCTAAACTCGATTATGTCTACTTATCTTGGAAATAGGAAAATAAATTTCGTCTGTCATAAAAGTACAATTAGTCAACAACTTTAGCTGGGATCTTGAAACATACTTCAGAATTGTTATTTTCGTCAACAAGAGATAATTGGATGGTCAGAGCAACTTTTGGATAGGCTTTCAGAACTGGCATCTTAAGCCTTAAAGTCAACGTTAGCCTCAACATTAGTTCCTCTAACCAAATTGCAAGGCAGAGTATCGCAACCCAAAATCTTCACGTTCGTTGGGGCTGGTTTACCATCGCAAGGCACATAAGCTTGCATCGAGTTGGCGATGAAGAGCACCGCAAATACGTAAACTGCAATCACAAGTGTGAGGATTGCCATTTTGGATTGCTACTTCTTTCGTGTACAA]
[+] EMBL BI505487 [CGTGCCAATGATGAGCGACCGGGTCGATCGTTGTGCAGGGATGTGGGTCAGGCATACGCCCGAACCCCCTGGATTTTCATCTCGTCCCTTTCTCCGATAAACATAGAATATTCTCTGGAATCCTCGGAACTTTTCACAAAAAAATTTTCTTTATGACGATCATTATCTAAACTCGATTATGTCTACTTATCTTGGAAATAGGAAAATAAATTTCGTCTGTCATAAAAGTACAATTAGTCAACAACTTTAGCTGGGATCTTGAAACATACTTCAGAATTGTTATTTTCGTCAACAAGAGATAATTGGATGGTCAGAGCAACTTTTGGATAGGCTTTCAGAACTGGCATCTTAAGCCTTAAAGTCAACGTTAGCCTCAACATTAGTTCCTCTAACCAAATTGCAAGGCAGAGTATCGCAACCCAAAATCTTCACGTTCGTTGGGGCTGGTTTACCATCGCAAGGCACATAAGCTTGCATCGAGTTGGCGATGAAGAGCACCGCAAATACGTAAACTGCAATCACAAGTGTGAGGATTGCCATTTTGGATTGCTACTTCTTTCGTGTACAA]
[+] EMBL BI508602 [CGTGCCAATGATGAGCGACCGGGTCGATCGTTGTGCAGGGATGTGGGTCAGGCATACGCCCGAACCCCCTGGATTTTCATCTCGTCCCTTTCTCCGATAAACATAGAATATTCTCTGGAATCCTCGGAACTTTTCACAAAAAAATTTTCTTTATGACGATCATTATCTAAACTCGATTATGTCTACTTATCTTGGAAATAGGAAAATAAATTTCGTCTGTCATAAAAGTACAATTAGTCAACAACTTTAGCTGGGATCTTGAAACATACTTCAGAATTGTTATTTTCGTCAACAAGAGATAATTGGATGGTCAGAGCAACTTTTGGATAGGCTTTCAGAACTGGCATCTTAAGCCTTAAAGTCAACGTTAGCCTCAACATTAGTTCCTCTAACCAAATTGCAAGGCAGAGTATCGCAACCCAAAATCTTCACGTTCGTTGGGGCTGGTTTACCATCGCAAGGCACATAAGCTTGCATCGAGTTGGCGATGAAGAGCACCGCAAATACGTAAACTGCAA ]
consensusID : consensus_886#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence
[TTCATCTCGTCCCTTTCTCCGATAAACATAGAATATTCTCTGGAATCCTCGGAACTTTTCACAAAAAAATTTTCTTTATGACGATCATTATCTAAACTCGATTATGTCTACTTATCTTGGAAATAGGAAAATAAATTTCGTCTGTCATAAAAGTACAATTAGTCGACAACTTTAGCTGGGATCTTGAAACATACTTCAGAATTGTTATTTTCGTCAACAAGAGATAATTGGATGGTCAGAGCAACTTTTGGATAGGCTTTCAGAACTGGCATCTTATGCCTTAAAGTCAACGTTAGCCTCAACATTAGTTCCTCTAACCAAATTGCAAGGCAGAGTATCGCAACCCAAAATCTTCACGTTCGTTGGGGCTGGTTTACCGTCGCAGGGTACATAAGCTTGCATCGAGTTGGCGATGAAGAGCACCGCAAATACGTAAACTGCAATCACAAGTGTATATACTTCATTAAGGATTATAAGGATTATAATTAAGTAATAGAATAGAAATATATTTGAAATAGAATTCTCTCTAGAATT]
[+] EMBL BI507942 [TTCATCTCGTCCCTTTCTCCGATAAACATAGAATATTCTCTGGAATCCTCGGAACTTTTCACAAAAAAATTTTCTTTATGACGATCATTATCTAAACTCGATTATGTCTACTTATCTTGGAAATAGGAAAATAAATTTCGTCTGTCATAAAAGTACAATTAGTCGACAACTTTAGCTGGGATCTTGAAACATACTTCAGAATTGTTATTTTCGTCAACAAGAGATAATTGGATGGTCAGAGCAACTTTTGGATAGGCTTTCAGAACTGGCATCTTATGCCTTAAAGTCAACGTTAGCCTCAACATTAGTTCCTCTAACCAAATTGCAAGGCAGAGTATCGCAACCCAAAATCTTCACGTTCGTTGGGGCTGGTTTACCGTCGCAGGGTACATAAGCTTGCATCGAGTTGGCGATGAAGAGCACCGCAAATACGTAAACTGCAATCACAAGTGTATATACTTCATTAAGGATTATAAGGATTATAATTAAGTAATAGAATAGAAATATATTTGAAATAGAATTCTCTCTAGAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_886#0 CGTGCCAATGATGAGCGACCGGGTCGATCGTTGTGCAGGGATGTGGGTCAGGCATACGCC 60
consensus_886#1 ------------------------------------------------------------
consensus_886#0 CGAACCCCCTGGATTTTCATCTCGTCCCTTTCTCCGATAAACATAGAATATTCTCTGGAA 120
consensus_886#1 ---------------TTCATCTCGTCCCTTTCTCCGATAAACATAGAATATTCTCTGGAA 45
*********************************************
consensus_886#0 TCCTCGGAACTTTTCACAAAAAAATTTTCTTTATGACGATCATTATCTAAACTCGATTAT 180
consensus_886#1 TCCTCGGAACTTTTCACAAAAAAATTTTCTTTATGACGATCATTATCTAAACTCGATTAT 105
************************************************************
consensus_886#0 GTCTACTTATCTTGGAAATAGGAAAATAAATTTCGTCTGTCATAAAAGTACAATTAGTCA 240
consensus_886#1 GTCTACTTATCTTGGAAATAGGAAAATAAATTTCGTCTGTCATAAAAGTACAATTAGTCG 165
***********************************************************
consensus_886#0 ACAACTTTAGCTGGGATCTTGAAACATACTTCAGAATTGTTATTTTCGTCAACAAGAGAT 300
consensus_886#1 ACAACTTTAGCTGGGATCTTGAAACATACTTCAGAATTGTTATTTTCGTCAACAAGAGAT 225
************************************************************
consensus_886#0 AATTGGATGGTCAGAGCAACTTTTGGATAGGCTTTCAGAACTGGCATCTTAAGCCTTAAA 360
consensus_886#1 AATTGGATGGTCAGAGCAACTTTTGGATAGGCTTTCAGAACTGGCATCTTATGCCTTAAA 285
*************************************************** ********
consensus_886#0 GTCAACGTTAGCCTCAACATTAGTTCCTCTAACCAAATTGCAAGGCAGAGTATCGCAACC 420
consensus_886#1 GTCAACGTTAGCCTCAACATTAGTTCCTCTAACCAAATTGCAAGGCAGAGTATCGCAACC 345
************************************************************
consensus_886#0 CAAAATCTTCACGTTCGTTGGGGCTGGTTTACCATCGCAAGGCACATAAGCTTGCATCGA 480
consensus_886#1 CAAAATCTTCACGTTCGTTGGGGCTGGTTTACCGTCGCAGGGTACATAAGCTTGCATCGA 405
********************************* ***** ** *****************
consensus_886#0 GTTGGCGATGAAGAGCACCGCAAATACGTAAACTGCAATCACAAGTGTGAGGATTGCCAT 540
consensus_886#1 GTTGGCGATGAAGAGCACCGCAAATACGTAAACTGCAATCACAAGTGTATATACT-TCAT 464
************************************************ * * ***
consensus_886#0 TTTGGATTGCTACTTCTTTCGTGTACAA-------------------------------- 568
consensus_886#1 TAAGGATTATAAGGATTATAATTAAGTAATAGAATAGAAATATATTTGAAATAGAATTCT 524
* ***** * * * * * *
consensus_886#0 ----------
consensus_886#1 CTCTAGAATT 534
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |