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Apis mellifera
cluster # 903 cluster # 903       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_903#0 length = 599 sequences # 2  
consensus_903#1 length = 578 sequences # 1  

consensusID : consensus_903#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 599
fasta sequence
                              [GCTCAAATTAAGATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTTCCATTAGNCAAGNNNCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGNNAAACTGATCTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGAATGTNGAACATGCTAAAGATGATGTAAAAAAAGCATTGACTGCCCTCAATTCTCATTTACTTACACGTACTTACTTGGTTGGAGAACGATTAACATTAGCAGATATTAGTGTNGCCATGACATTACTTCATTTATATCAATATATTCTGGAACCAAATTTACGTAAACCATATCAAAATGTAAATCGATGGTTTCAAACAGTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACTCTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTC]

[+] EMBL BI503404             [GCTCAAATTAAGATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTTCCATTAGNCAAGNNNCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGNNAAACTGATCTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGAATGTNGAACATGCTAAAGATGATGTAAAAAAAGCATTGACTGCCCTCAATTCTCATTTACTTACACGTACTTACTTGGTTGGAGAACGATTAACATTAGCAGATATTAGTGTNGCCATGACATTACTTCATTTATATCAATATATTCTGGAACCAAATTTACG                                                                                                                                                ]
[+] EMBL BI506692             [                                  GCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTTCCATTAGGCAAGGTTCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGCAAAACTGATCTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGAATGTAGAACATGCTAAAGATGATGTAAAAAAAGCATTGACTGCCCTCAATTCTCATTTACTTACACGTACTTACTTGGTTGGAGAACGATTAACATTAGCAGATATTAGTGTAGCCATGACATTACTTCATTTATATCAATATATTCTGGAACCAAATTTACGTAAACCATATCAAAATGTAAATCGATGGTTTCAAACAGTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACTCTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTC]


>consensus_903#0 GCTCAAATTAAGATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTT TTAAAGAAATTTCCATTAGNCAAGNNNCCAGCATTTGAAACATGTGATGGAAAATATATC ACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGNNAAACTGAT CTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCT AGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGAATGTNGAA CATGCTAAAGATGATGTAAAAAAAGCATTGACTGCCCTCAATTCTCATTTACTTACACGT ACTTACTTGGTTGGAGAACGATTAACATTAGCAGATATTAGTGTNGCCATGACATTACTT CATTTATATCAATATATTCTGGAACCAAATTTACGTAAACCATATCAAAATGTAAATCGA TGGTTTCAAACAGTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTG GCTGAGAAAACTCTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTC



consensusID : consensus_903#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence
                              [GAAAACTTCAGAGCTTACAAAGTGCTTATTGCAGCTCAGTATTCCGGTGCTCAAATTAAGATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTTCCATTAGGCAAGGTTCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGCAAAACTGATCTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACTCTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTCAAAGAAAGAGAAAAAAGAAAAGGAATCTAAAAAAGAATCAAAAGAAATAAAGGAATCTAAAAAGGAAACCATTGAAGATTTAGATCCAGCAGATGCTGCTTTAGCTGCTGAACCTAAAACTACAAATCCTTTT]

[+] EMBL BI506848             [GAAAACTTCAGAGCTTACAAAGTGCTTATTGCAGCTCAGTATTCCGGTGCTCAAATTAAGATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTTCCATTAGGCAAGGTTCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGCAAAACTGATCTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACTCTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTCAAAGAAAGAGAAAAAAGAAAAGGAATCTAAAAAAGAATCAAAAGAAATAAAGGAATCTAAAAAGGAAACCATTGAAGATTTAGATCCAGCAGATGCTGCTTTAGCTGCTGAACCTAAAACTACAAATCCTTTT]


>consensus_903#1 GAAAACTTCAGAGCTTACAAAGTGCTTATTGCAGCTCAGTATTCCGGTGCTCAAATTAAG ATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTT CCATTAGGCAAGGTTCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAAT GCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGCAAAACTGATCTTGAACGCGCA GAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGG GTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGTCATTTATCAACCTGAGTCAA TGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACTCTTGAATATGATCCAAAAAAAT TTGCAGAAACTCAAGGAAAATCTTCAAAGAAAGAGAAAAAAGAAAAGGAATCTAAAAAAG AATCAAAAGAAATAAAGGAATCTAAAAAGGAAACCATTGAAGATTTAGATCCAGCAGATG CTGCTTTAGCTGCTGAACCTAAAACTACAAATCCTTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_903#0      ------------------------------------------------GCTCAAATTAAG 12
consensus_903#1      GAAAACTTCAGAGCTTACAAAGTGCTTATTGCAGCTCAGTATTCCGGTGCTCAAATTAAG 60
                                                                     ************

consensus_903#0      ATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTT 72
consensus_903#1      ATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTT 120
                     ************************************************************

consensus_903#0      CCATTAGNCAAGNNNCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAAT 132
consensus_903#1      CCATTAGGCAAGGTTCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAAT 180
                     ******* ****   *********************************************

consensus_903#0      GCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGNNAAACTGATCTTGAACGCGCA 192
consensus_903#1      GCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGCAAAACTGATCTTGAACGCGCA 240
                     **************************************  ********************

consensus_903#0      GAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGG 252
consensus_903#1      GAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGG 300
                     ************************************************************

consensus_903#0      GTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGAATGTNGAACATGCTAAAGAT 312
consensus_903#1      GTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGTCATTTA-------TCAACCT 353
                     ***************************************    *         * **  *

consensus_903#0      GATGTAAAAAAAGCATTGACTGCCCTCAATTCTCATTTACTTACACGTACTTACTTGGTT 372
consensus_903#1      GAGTCAATGGCTGTAATTGGTGCCTTTAA-----ATTGGCTGAGAAA-ACT--CTTGAAT 405
                     **   **     * * *   **** * **     ***  ** * *   ***  ****  *

consensus_903#0      GGAGAACGATTAACATTAGCAGATATTAGTGTNGCCATGACATTACTTCATTTATATCAA 432
consensus_903#1      AT-GATCCAAAAAAATTTGCAGAAACT--------CAAGGAAAATCTTCAAAGAAAGAGA 456
                        ** * *  ** *** ***** * *        ** *  *   *****   * *   *

consensus_903#0      TATATTCTGGAACCAAATTTACGTAAACCATATCAAAATGTAAATCGATGGTTTCAAACA 492
consensus_903#1      AAAA---AGAAAAGGAATCTA---AAAAAGAATCAAAAG--AAATAAAGGAATCTAAAAA 508
                      * *    * **   *** **   ***    *******   ****  * *  *  *** *

consensus_903#0      GTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACT 552
consensus_903#1      GGAAACCATTGAA--GATTTAGATCCAGCAGATGCTGCTTTAGCTGCTGAACCTAAAACT 566
                     *  *   **  *   ** * *    * * *  ** *** **       *     ******

consensus_903#0      CTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTC 599
consensus_903#1      ACAAATCCTTTT----------------------------------- 578
                         *   *  *                                   




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)