These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence [GCTCAAATTAAGATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTTCCATTAGNCAAGNNNCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGNNAAACTGATCTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGAATGTNGAACATGCTAAAGATGATGTAAAAAAAGCATTGACTGCCCTCAATTCTCATTTACTTACACGTACTTACTTGGTTGGAGAACGATTAACATTAGCAGATATTAGTGTNGCCATGACATTACTTCATTTATATCAATATATTCTGGAACCAAATTTACGTAAACCATATCAAAATGTAAATCGATGGTTTCAAACAGTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACTCTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTC] [+] EMBL BI503404 [GCTCAAATTAAGATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTTCCATTAGNCAAGNNNCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGNNAAACTGATCTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGAATGTNGAACATGCTAAAGATGATGTAAAAAAAGCATTGACTGCCCTCAATTCTCATTTACTTACACGTACTTACTTGGTTGGAGAACGATTAACATTAGCAGATATTAGTGTNGCCATGACATTACTTCATTTATATCAATATATTCTGGAACCAAATTTACG ] [+] EMBL BI506692 [ GCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTTCCATTAGGCAAGGTTCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGCAAAACTGATCTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGAATGTAGAACATGCTAAAGATGATGTAAAAAAAGCATTGACTGCCCTCAATTCTCATTTACTTACACGTACTTACTTGGTTGGAGAACGATTAACATTAGCAGATATTAGTGTAGCCATGACATTACTTCATTTATATCAATATATTCTGGAACCAAATTTACGTAAACCATATCAAAATGTAAATCGATGGTTTCAAACAGTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACTCTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTC] consensusID : consensus_903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [GAAAACTTCAGAGCTTACAAAGTGCTTATTGCAGCTCAGTATTCCGGTGCTCAAATTAAGATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTTCCATTAGGCAAGGTTCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGCAAAACTGATCTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACTCTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTCAAAGAAAGAGAAAAAAGAAAAGGAATCTAAAAAAGAATCAAAAGAAATAAAGGAATCTAAAAAGGAAACCATTGAAGATTTAGATCCAGCAGATGCTGCTTTAGCTGCTGAACCTAAAACTACAAATCCTTTT] [+] EMBL BI506848 [GAAAACTTCAGAGCTTACAAAGTGCTTATTGCAGCTCAGTATTCCGGTGCTCAAATTAAGATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTTCCATTAGGCAAGGTTCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAATGCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGCAAAACTGATCTTGAACGCGCAGAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGGGTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACTCTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTCAAAGAAAGAGAAAAAAGAAAAGGAATCTAAAAAAGAATCAAAAGAAATAAAGGAATCTAAAAAGGAAACCATTGAAGATTTAGATCCAGCAGATGCTGCTTTAGCTGCTGAACCTAAAACTACAAATCCTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_903#0 ------------------------------------------------GCTCAAATTAAG 12 consensus_903#1 GAAAACTTCAGAGCTTACAAAGTGCTTATTGCAGCTCAGTATTCCGGTGCTCAAATTAAG 60 ************ consensus_903#0 ATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTT 72 consensus_903#1 ATTGCAGATGATTTCGTTTTCGGCGAGACAAATAAAACCGAAGCATTTTTAAAGAAATTT 120 ************************************************************ consensus_903#0 CCATTAGNCAAGNNNCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAAT 132 consensus_903#1 CCATTAGGCAAGGTTCCAGCATTTGAAACATGTGATGGAAAATATATCACAGAAAGCAAT 180 ******* **** ********************************************* consensus_903#0 GCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGNNAAACTGATCTTGAACGCGCA 192 consensus_903#1 GCAATTGCTTATTATGTGGCTAATGATCAATTAAAAGGCAAAACTGATCTTGAACGCGCA 240 ************************************** ******************** consensus_903#0 GAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGG 252 consensus_903#1 GAAATCATTCAATGGTTTGGTTTTGCAGATTCTGAAATTCTTCCAGCTAGTTGTGCATGG 300 ************************************************************ consensus_903#0 GTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGAATGTNGAACATGCTAAAGAT 312 consensus_903#1 GTATTCCCATTGCTTGGAATTATGCCATATAATAAACAGTCATTTA-------TCAACCT 353 *************************************** * * ** * consensus_903#0 GATGTAAAAAAAGCATTGACTGCCCTCAATTCTCATTTACTTACACGTACTTACTTGGTT 372 consensus_903#1 GAGTCAATGGCTGTAATTGGTGCCTTTAA-----ATTGGCTGAGAAA-ACT--CTTGAAT 405 ** ** * * * **** * ** *** ** * * *** **** * consensus_903#0 GGAGAACGATTAACATTAGCAGATATTAGTGTNGCCATGACATTACTTCATTTATATCAA 432 consensus_903#1 AT-GATCCAAAAAAATTTGCAGAAACT--------CAAGGAAAATCTTCAAAGAAAGAGA 456 ** * * ** *** ***** * * ** * * ***** * * * consensus_903#0 TATATTCTGGAACCAAATTTACGTAAACCATATCAAAATGTAAATCGATGGTTTCAAACA 492 consensus_903#1 AAAA---AGAAAAGGAATCTA---AAAAAGAATCAAAAG--AAATAAAGGAATCTAAAAA 508 * * * ** *** ** *** ******* **** * * * *** * consensus_903#0 GTCATTTATCAACCTGAGTCAATGGCTGTAATTGGTGCCTTTAAATTGGCTGAGAAAACT 552 consensus_903#1 GGAAACCATTGAA--GATTTAGATCCAGCAGATGCTGCTTTAGCTGCTGAACCTAAAACT 566 * * ** * ** * * * * * ** *** ** * ****** consensus_903#0 CTTGAATATGATCCAAAAAAATTTGCAGAAACTCAAGGAAAATCTTC 599 consensus_903#1 ACAAATCCTTTT----------------------------------- 578 * * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |