These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 540 fasta sequence [AAATGTTTCTAAAGATTTTAATATAAGTAGAAATGAACAAGATGAATATGCAGTTAAATCTCAGAAAAAAGCAGAAGCTGCAATTACTGAAGGTTATTTTAAAAAAGAAATCATTCCTGTAACATTATCTACTGAAAAAGAATCTGTTATCATGGATAAAGATGAATATCCTAAGTTTGGAACAACTTTTGAAGATCTTCAAAAATTAAAACCAGCTTTTCTGAAAAATGAAGGTACAGTTACAGCTGGGAATGCTTCTGGTATCAATGATGGAGCAGCAGCAGTAGTTCTTATGTCAGCAGACATTGCTAAACAAAAAGGACTTTCTCCATTAGCTAAAATTGTTGCAATGGCTCAAGTTGGCGTGGAACCANGAATTATGGGTATAGGTCCTATACCAGCAGTTGAACTAGTATTACAAAAAGCAAAATGGACAAAAGAAGAAGTAGATTTATATGAATTAAATGAAGCTTTTGCAGCCCAATCAATAGCATGTGTAAAATCTCTTGGTCTAAATCCAGACAAAGTTAATATAAATGG] [+] EMBL BI506530 [AAATGTTTCTAAAGATTTTAATATAAGTAGAAATGAACAAGATGAATATGCAGTTAAATCTCAGAAAAAAGCAGAAGCTGCAATTACTGAAGGTTATTTTAAAAAAGAAATCATTCCTGTAACATTATCTACTGAAAAAGAATCTGTTATCATGGATAAAGATGAATATCCTAAGTTTGGAACAACTTTTGAAGATCTTCAAAAATTAAAACCAGCTTTTCTGAAAAATGAAGGTACAGTTACAGCTGGGAATGCTTCTGGTATCAATGATGGAGCAGCAGCAGTAGTTCTTATGTCAGCAGACATTGCTAAACAAAAAGGACTTTCTCCATTAGCTAAAATTGTTGCAATGGCTCAAGTTGGCGTGGAACCAAGAATTATGGGTATAGGTCCTATACCAGCAGTTGAACTAGTATTACAAAAAGCAAAATGGACAAAAGAAGAAGTAGATTTATATGAATTAAATGAAGCTTTTGCAGCCCAATCAATAGCATGTGTAAAATCTCTTGGTCTAAATCCAGACAAAGTTAATATAAATGG] [+] EMBL BI514324 [ TAAAGATTTTAATATAAGTAGAAATGAACAAGATGAATATGCAGTTAAATCTCAGAAAAAAGCAGAAGCTGCAATTACTGAAGGTTATTTTAAAAAAGAAATCATTCCTGTAACATTATCTACTGAAAAAGAATCTGTTATCATGGATAAAGATGAATATCCTAAGTTTGGAACAACTTTTGAAGATCTTCAAAAATTAAAACCAGCTTTTCTGAAAAATGAAGGTACAGTTACAGCTGGGAATGCTTCTGGTATCAATGATGGAGCAGCAGCAGTAGTTCTTATGTCAGCAGACATTGCTAAACAAAAAGGACTTTCTCCATTAGCTAAAATTGTTGCAATGGCTCAAGTTGGCGTGGAACCANGAATTATGGGTATAGGTCCTATACCAGCAGTTGAACTAGTATTACAAAAAGCAAAATGGACAAAAGAAGAAGTAGATTTATATGAATTAAATGAAGCTTTTGCAGCCCAATCAATAGC ] consensusID : consensus_914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [TAAGAGCACATCTTAAACCTGTGGATGTTTCTGAAGTTGTATTTGGACAGGTATTAATTGCTGCTCAAGGACAAAATCCAGCAAGACAAGCAGCAATGAAAGCTGGAATTCCTATAGCTACACCTGCTTATTTAATTAATATGTTATGTGGCTCAGGGTTAAAAGCAATAATGGAAGGATATATGTCCATAAAAGCTGGTGAAAATCAAGTAGTTGTAGCTGGTGGTCAAGAAAGTATGAGTCAATCTGTACATGCAATACAATTTAGAAATGGTGTAAAAATAGGAGATAGTCGTCTAATAGACACTTTAATATTTGATGGTTTAACAGATGCATTTCATGGAATTCATATGGGAATAACAGCTGAAAATGTTTCTAAAGATTTTAATATAAGTAGAAATGAACAAGATGAATATGCAGTTAAATCTCAGAAAAAAGCAGA] [+] EMBL BI515730 [TAAGAGCACATCTTAAACCTGTGGATGTTTCTGAAGTTGTATTTGGACAGGTATTAATTGCTGCTCAAGGACAAAATCCAGCAAGACAAGCAGCAATGAAAGCTGGAATTCCTATAGCTACACCTGCTTATTTAATTAATATGTTATGTGGCTCAGGGTTAAAAGCAATAATGGAAGGATATATGTCCATAAAAGCTGGTGAAAATCAAGTAGTTGTAGCTGGTGGTCAAGAAAGTATGAGTCAATCTGTACATGCAATACAATTTAGAAATGGTGTAAAAATAGGAGATAGTCGTCTAATAGACACTTTAATATTTGATGGTTTAACAGATGCATTTCATGGAATTCATATGGGAATAACAGCTGAAAATGTTTCTAAAGATTTTAATATAAGTAGAAATGAACAAGATGAATATGCAGTTAAATCTCAGAAAAAAGCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_914#0 ---AAATGTTTCTAAAGATTTTA-ATATAAGTAGAAATGAACAAGATGAATATGCAGTTA 56 consensus_914#1 TAAGAGCACATCTTAAACCTGTGGATGTTTCTGAAGTTGTAT---TTGGACAGGTA-TTA 56 * *** ** * * ** * * * ** * ** * * * * *** consensus_914#0 AATCTCAGAAAAAAGCAGAAGCTGCAATTACTGAAGGTTATTTTAAAAAAGAAATCATTC 116 consensus_914#1 ATTGCTGCTCAAGGACAAAATCCAGCAAGACAAGCAGCAAT-----GAAAGCTGGAATTC 111 * * ** ** ** * * ** * ** **** **** consensus_914#0 CTGTAACATTATCTACTGAA--AAAGAATCTGTTATCATGGATAAAGATGAATATCCTAA 174 consensus_914#1 CTATAGCTACACCTGCTTATTTAATTAATATGTTAT-GTGGCTCAGGGTTAAAAGC--AA 168 ** ** * * ** ** * ** *** ****** *** * * * * ** * * ** consensus_914#0 GTTTGGAACAACTTTTG-----AAGATCTTCAAAAATTAAAACCAGCTTTTCTGAAAA-- 227 consensus_914#1 TAATGGAAGGATATATGTCCATAAAAGCTGGTGAAAATCAAGTAGTTGTAGCTGGTGGTC 228 ***** * * ** ** * ** *** * ** * *** consensus_914#0 ATGAAGGTACAGTTACAGCTGGGAATGCTTCTGGTATCAATGATGGAGCAGCAGCAGTAG 287 consensus_914#1 AAGAAAGTATGAGTCAATCTGTACATGCAATACAATTTAGAAATGGTGTAAAAATAGGAG 288 * *** *** * * *** **** * * **** * * * ** ** consensus_914#0 TTCTTATGTCAGCAGACATTGCTAAACAAAAAGGACTTTCTCCATTAGCTAAAATTGTTG 347 consensus_914#1 ATAGTCGTCTAATAGACACTTTAATATTTGATGG------TTTAACAGATGCATTTCATG 342 * * * ***** * * * * ** * * ** * * ** ** consensus_914#0 CAATGGCTCAAGTTGGCGTGGAACCANGAATTATGGGTATAGGTCCTA-TACCAGCAGT- 405 consensus_914#1 GAAT---TCATATGGGAATAACAGCTGAAAATGTTTCTAAAGATTTTAATATAAGTAGAA 399 *** *** * ** * * * ** * * ** ** * ** ** ** ** consensus_914#0 -TGAACTAGTATTACAAAAAGCAAAATGGACAAAAGAAGAAGTAGATTTATATGAATTAA 464 consensus_914#1 ATGAACAAGATGAATATGCAGTTAAAT---CTCAGAAAAAAGCAGA-------------- 442 ***** ** * * ** **** * * ** *** *** consensus_914#0 ATGAAGCTTTTGCAGCCCAATCAATAGCATGTGTAAAATCTCTTGGTCTAAATCCAGACA 524 consensus_914#1 ------------------------------------------------------------ consensus_914#0 AAGTTAATATAAATGG 540 consensus_914#1 ---------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |