Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 927 cluster # 927       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_927#0 length = 608 sequences # 2  
consensus_927#1 length = 449 sequences # 1  

consensusID : consensus_927#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 608
fasta sequence
                              [TATTATATATCGCGAGCTGCGAAGTGGTAATTTCCTTAGAGACGAACTCGAAACTGCGGCCCAACGACCCATAATATAATTATCGCTTTTAATCATCGTACCATCTGCCCCCATCGATTGGATTCCGCAATTGTCCGCGTACGTGGCATCGATCGTTTTTAACAAACGTTTCGCGAGTCGATGCACGTGCTTCCTCGCGCGAATGTAAGCGTGATCGCATCTGTGCCATCGTTAGTTAGAGACGCGTTTTCGTTCATGTTCGTCTATACATATATACATATATACATATATATATATATGTATATATATTNNGTGTATATATATATACACACGCGCAAACACAGACACACACACACCTGTACATTTGAGAGAAAGAGAGACTGGAATGGAGGAATGAATATGTGAATGTGTGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAGAATGCATTAGGGAGATACGCAAAATACACGCACACCTTATAGCCTTCGTTCTTCCGCACCGATTTGATTTCTTCTTGCGAATCCAATCGCACGTCTCCTTCTTCCCTGCGTATATCGAGTTACGTGTAACTTACATAATAAGTCGGAGTAAAAAAAAAAAC]

[+] EMBL BI510631             [TATTATATATCGCGAGCTGCGAAGTGGTAATTTCCTTAGAGACGAACTCGAAACTGCGGCCCAACGACCCATAATATAATTATCGCTTTTAATCATCGTACCATCTGCCCCCATCGATTGGATTCCGCAATTGTCCGCGTACGTGGCATCGATCGTTTTTAACAAACGTTTCGCGAGTCGATGCACGTGCTTCCTCGCGCGAATGTAAGCGTGATCGCATCTGTGCCATCGTTAGTTAGAGACGCGTTTTCGTTCATGTTCGTCTATACATATATACATATATAC    ATATATATATGTATATATATTNNGTGTATATATATATACACACGCGCAAACACAGACACACACACACCTGTACATTTGAGAGAAAGAGAGACTGGAATGGAGGAATGAATATGTGAATGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAAAG                                                                                                                                                                    ]
[+] EMBL BI515015             [                                  CTTAGAGACGAACTCGAAACTGCGGCCCAACGACCCATAATATAATTATCGCTTTTAATCATCGTACCATCTGCCCCCATCGATTGGATTCCGCAATTGTCCGCGTACGTGGCATCGATCGTTTTTAACAAACGTTTCGCGAGTCGATGCACGTGCTTCCTCGCGCGAATGTAAGCGTGATCGCATCTGTGCCATCGTTAGTTAGAGACGCGTTTTCGTTCATGTTCGTCTATACATATATACATATATACATATATATATATATATATATATATTGTGTGTATATATATATACACACGTGCAAACACAGACACACACACACCTGTACATTTGAGAGAAAGAGAGACTGGAATGGAGGAATGAATATGTGAATGTGTGTGCGAGAGAGAGAGAGAGAGAGAGAAAGAGGAGAGAATGCATTAGGGAGATACGCAAAATACACGCACACCTTATAGCCTTCGTTCTTCCGCACCGATTTGATTTCTTCTTGCGAATCCAATCGCACGTCTCCTTCTTCCCTGCGTATATCGAGTTACGTGTAACTTACATAATAAGTCGGAGTAAAAAAAAAAAC]


>consensus_927#0 TATTATATATCGCGAGCTGCGAAGTGGTAATTTCCTTAGAGACGAACTCGAAACTGCGGC CCAACGACCCATAATATAATTATCGCTTTTAATCATCGTACCATCTGCCCCCATCGATTG GATTCCGCAATTGTCCGCGTACGTGGCATCGATCGTTTTTAACAAACGTTTCGCGAGTCG ATGCACGTGCTTCCTCGCGCGAATGTAAGCGTGATCGCATCTGTGCCATCGTTAGTTAGA GACGCGTTTTCGTTCATGTTCGTCTATACATATATACATATATACATATATATATATATG TATATATATTNNGTGTATATATATATACACACGCGCAAACACAGACACACACACACCTGT ACATTTGAGAGAAAGAGAGACTGGAATGGAGGAATGAATATGTGAATGTGTGTGCGAGAG AGAGAGAGAGAGAGAGAGAGAGGGGAGAATGCATTAGGGAGATACGCAAAATACACGCAC ACCTTATAGCCTTCGTTCTTCCGCACCGATTTGATTTCTTCTTGCGAATCCAATCGCACG TCTCCTTCTTCCCTGCGTATATCGAGTTACGTGTAACTTACATAATAAGTCGGAGTAAAA AAAAAAAC



consensusID : consensus_927#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence
                              [CTCCTTCTTCCCTGCGTATATCGAGTTACGTGTAACTTACATAATAAGTCGGAGTAAAAAAAAAAACGTACGTATTTTCTATCCGTTTAATGGCGAAAGAAATTCATCCTTCTTTCGAGAAGAAATCCGAATTTAAAGTGTTCGTTCGATAGGATTTTGATTTTCCTTTTTTTCTCTCTCTTCTAAATTGCTCGAATGTGTAAAAGTGGATCGAACGATTATAGATAAGATCGGGTCGATCAGACGACGCAGGGATACGATACGTAGAAATCCACGAAACTCTAAAGGAGATCGCATTATATTATAACTAGGCATCTAAGGAAGCTACGTGTCTAAGTATGTATGTATCTGTAAGTTGTGNGTTAGCATGTCAAGCGTGGGATATAGTGATGTAATTGAACGAGAAAGAGAAAAGAGAAAAGGCGCTCCGAAAGGGTCGGCGTCTCGTA]

[+] EMBL BI513764             [CTCCTTCTTCCCTGCGTATATCGAGTTACGTGTAACTTACATAATAAGTCGGAGTAAAAAAAAAAACGTACGTATTTTCTATCCGTTTAATGGCGAAAGAAATTCATCCTTCTTTCGAGAAGAAATCCGAATTTAAAGTGTTCGTTCGATAGGATTTTGATTTTCCTTTTTTTCTCTCTCTTCTAAATTGCTCGAATGTGTAAAAGTGGATCGAACGATTATAGATAAGATCGGGTCGATCAGACGACGCAGGGATACGATACGTAGAAATCCACGAAACTCTAAAGGAGATCGCATTATATTATAACTAGGCATCTAAGGAAGCTACGTGTCTAAGTATGTATGTATCTGTAAGTTGTGNGTTAGCATGTCAAGCGTGGGATATAGTGATGTAATTGAACGAGAAAGAGAAAAGAGAAAAGGCGCTCCGAAAGGGTCGGCGTCTCGTA]


>consensus_927#1 CTCCTTCTTCCCTGCGTATATCGAGTTACGTGTAACTTACATAATAAGTCGGAGTAAAAA AAAAAACGTACGTATTTTCTATCCGTTTAATGGCGAAAGAAATTCATCCTTCTTTCGAGA AGAAATCCGAATTTAAAGTGTTCGTTCGATAGGATTTTGATTTTCCTTTTTTTCTCTCTC TTCTAAATTGCTCGAATGTGTAAAAGTGGATCGAACGATTATAGATAAGATCGGGTCGAT CAGACGACGCAGGGATACGATACGTAGAAATCCACGAAACTCTAAAGGAGATCGCATTAT ATTATAACTAGGCATCTAAGGAAGCTACGTGTCTAAGTATGTATGTATCTGTAAGTTGTG NGTTAGCATGTCAAGCGTGGGATATAGTGATGTAATTGAACGAGAAAGAGAAAAGAGAAA AGGCGCTCCGAAAGGGTCGGCGTCTCGTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_927#0      --TATTATATATCGCGAGCTGCGAAGTGGTAATTTCCTTAGAGACGAACTCGAAACTGCG 58
consensus_927#1      CTCCTTCTTCCCTGCGTA-TATCGAGTTACGTGTAACTTACATAATAAGTCGGAGTAAAA 59
                         ** *     ***   *    ***      *  **** * *  ** *** *      

consensus_927#0      GCCCAACGACCCATAATATAATTATCGCTTTTAATCATCGTACCATCTGCCCCCATCGAT 118
consensus_927#1      AAAAAAACGTACGTATTTTCTATCCGTTTAATGGCGAAAGAAATTCATCCTTCTTTCGAG 119
                         **     * ** * *   *     *  *    *  * *     * *  *  **** 

consensus_927#0      TGGATTCCGCAATTGTCCGCGTACGTGGCATCGATCGTTTTTAACAAACGTTTCGCGAGT 178
consensus_927#1      AAGAAATCCGAATTTAAAGTGTTCGT----TCGATAGGATTTTGATTTTCCTTTTTTTCT 175
                       **   *  ****    * ** ***    ***** *  ***         **      *

consensus_927#0      CGATGCACGTGCTTCCTCGCGCGAATGTAAGCGTGATCGCATCTGTGCCATCGTTAGTTA 238
consensus_927#1      CTCTCTTCTAAATTGCTCGAATGTGTAAAAGTG-GATCGAACGATTATAG--ATAAGATC 232
                     *  *   *    ** ****   *  *  *** * ***** *    *       * ** * 

consensus_927#0      GAGACGCGTTTTCGTTCATGTTCGTCTATACATATATACATATATACATATATATATATA 298
consensus_927#1      GGGTCGATCAGACGACGCAGGGATACGATACGTAGAAATCCACGAAACTCTAAAGGAGAT 292
                     * * **      **     *     * **** ** * *   *   *  * ** *      

consensus_927#0      TGTATATATATTNNGTGTATATATATATACACACGCGCAAACACAGACACACACACACCT 358
consensus_927#1      CGCAT-TATATTATAACTAGGCATCTAAGGAAGC-TACGTGTCTAAGTATGTATGTATCT 350
                      * ** ******     **   ** **   *  *   *      *   *   *   * **

consensus_927#0      GTACATTTGAGAGAAAGAGAGACTGGAATGGAGGAATGAATATGTGAATGTGTGTGCGAG 418
consensus_927#1      GTA-AGTTGTGNGTTAGCATGTCAAGCGTGG-GATATAGTGATGTAATTGAACGAGAAAG 408
                     *** * *** * *  **   * *  *  *** *  **    **** * **   * *  **

consensus_927#0      AGAGAGAGAGAGAGAGAGAGAGAGGGGAGAATGCATTAGGGAGATACGCAAAATACACGC 478
consensus_927#1      AGA-AAAGAGAAAAGGCGCTCCGAAAGGGTCGGCGTCTCGTA------------------ 449
                     *** * ***** *  * *        * *   ** *   * *                  

consensus_927#0      ACACCTTATAGCCTTCGTTCTTCCGCACCGATTTGATTTCTTCTTGCGAATCCAATCGCA 538
consensus_927#1      ------------------------------------------------------------
                                                                                 

consensus_927#0      CGTCTCCTTCTTCCCTGCGTATATCGAGTTACGTGTAACTTACATAATAAGTCGGAGTAA 598
consensus_927#1      ------------------------------------------------------------
                                                                                 

consensus_927#0      AAAAAAAAAC 608
consensus_927#1      ----------
                               




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)