These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 532 fasta sequence [TCATGTGACATAGTGTTATTGTGTTTCCTGTGATTATCCGCAGGTCTGTGAAGAAAATTCGAATATTCGATAAGAGGGGAAAATATTCGAAGGATGGACAATCAATCTGAAGTATAGGATTCGCACAAGCCACTGCGGGAGTTGCGATGCCAACGTATCACAATGCGGGTGGTGGATACCCGAATGTGTCAGCGCCAGCGCGGCAAGCGAAGCTCGATGGCAATCAAAATCACCATACGATCCCCTCAAACGTAACGTCCCATCCCCTTATACAAAATAGCACGCAACACAACGTTCCTTCCAACTTATCTGCAAGTAACATTCCGTCCCATCCAGTATCACCGACGATGACTACGCATTCGAACGTCACCACTCCTAATATAACCAGTCACATGAATACCGGATCAACGCCGGTAATCCTCACTTCGAATGTCACGAATCCTAGCAATCCTGCTGCGTTATCGGTGAATCCGAGGCACGAGGTCAAACTGAACGCTATGCCATGGTTCCACGGGAAGATATCAAGGGAAAC] [+] EMBL BI506327 [TCATGTGACATAGTGTTATTGTGTTTCCTGTGATTATCCGCAGGTCTGTGAAGAAAATTCGAATATTCGATAAGAGGGGAAAATATTCGAAGGATGGACAATCAATCTGAAGTATAGGATTCGCACAAGCCACTGCGGGAGTTGCGATGCCAACGTATCACAATGCGGGTGGTGGATACCCGAATGTGTCAGCGCCAGCGCGGCAAGCGAAGCTCGATGGCAATCAAAATCACCATACGATCCCCTCAAACGTAACGTCCCATCCCCTTATACAAAATAGCACGCAACACAACGTTCCTTCCAACTTATCTGCAAGTAACATTCCGTCCCATCCAGTATCACCGACGATGACTACGCATTCGAACGTCACCACTCCTAATATAACCAGTCACATGAATACCGGATCAACGCCGGTAATCCTCACTTCGAATGTCACGAATCCTAGCAATCCTGCTGCGTTATCGGTGAATCCGAGGCACGAGGTCAAACTGAACGCTATGCCATGGTTCCACGGGAAG ] [+] EMBL BI508181 [ ATCTGAAGTATAGGATTCGCACAAGCCACTGCGGGAGTTGCGATGCCAACGTATCACAATGCGGGTGGTGGATACCCGAATGTGTCAGCGCCAGCGCGGCAAGCGAAGCTCGATGGCAATCAAAATCACCATACGATCCCCTCAAACGTAACGTCCCATCCCCTTATACAAAATAGCACGCAACACAACGTTCCTTCCAACTTATCTGCAAGTAACTTTCCGTCCCATCCAGTATCACCGACGATGACTACGCATTCGAACGTCACCACTCCTAATATAACCAGTCACATGAATACCGGATCAACGCCGGTAATCCTCACTTCGAATGTCACGAATCCTAGCAATCCTGCTGCGTTATCGGTGAATCCGAGGCACGAGGTCAAACTGAACGCTATGCCATGGTTCCACGGGAAGATATCAAGGGAAAC] consensusID : consensus_935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [ATCCGCAGGTCTGTGAAGAAAATTCGAATATTCGATAAGAGGGGAAAATATTCGAAGGATGGACAATCAATCTGAAGTATAGGAAATATACATGTATCTATTCATAGAGCTTGAAAAACATTGAGATCTCAAATGAAATACGTAGTGGATTTTTTGCGGCGTAAAATGTTTCTCTACAAACCAGATACAATCGTAAACGCATTATAATGGTCGTAAATCACTTTAAATAACCTTGAAAGACCTCGAGAAACCAACATATTGATTCGCACAAGCCACTGCGGGAGTTGCGATGCCAACGTATCACAATGCGGGTGGTGGATACCCGAATGTGTCAGCGCCAGCGCGGCAAGCGAAGCTCGATGGCAATCAAAATCACCATACGATCCCCTCAAACGTAACGTCCCATCCCCTTATACAAAATAGCA] [+] EMBL BI506512 [ATCCGCAGGTCTGTGAAGAAAATTCGAATATTCGATAAGAGGGGAAAATATTCGAAGGATGGACAATCAATCTGAAGTATAGGAAATATACATGTATCTATTCATAGAGCTTGAAAAACATTGAGATCTCAAATGAAATACGTAGTGGATTTTTTGCGGCGTAAAATGTTTCTCTACAAACCAGATACAATCGTAAACGCATTATAATGGTCGTAAATCACTTTAAATAACCTTGAAAGACCTCGAGAAACCAACATATTGATTCGCACAAGCCACTGCGGGAGTTGCGATGCCAACGTATCACAATGCGGGTGGTGGATACCCGAATGTGTCAGCGCCAGCGCGGCAAGCGAAGCTCGATGGCAATCAAAATCACCATACGATCCCCTCAAACGTAACGTCCCATCCCCTTATACAAAATAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_935#0 TCATGTGACATAGTGTTATTGTGTTTCCTGTGATTATCCGCAGGTCTGTGAAGAAAATTC 60 consensus_935#1 -----------------------------------ATCCGCAGGTCTGTGAAGAAAATTC 25 ************************* consensus_935#0 GAATATTCGATAAGAGGGGAAAATATTCGAAGGATGGACAATCAATCTGAAGTATAGGAT 120 consensus_935#1 GAATATTCGATAAGAGGGGAAAATATTCGAAGGATGGACAATCAATCTGAAGTATAGGAA 85 *********************************************************** consensus_935#0 TCGCACAAG---CCACTGCGGGAGTT---GCGATGCCAACGTATCACA--ATGCGGGTGG 172 consensus_935#1 ATATACATGTATCTATTCATAGAGCTTGAAAAACATTGAGATCTCAAATGAAATACGTAG 145 *** * * * * *** * * * * *** * * ** * consensus_935#0 TGGATACCCGAATGTGTCAGCGCCAGCGCGGCAAGCGAAGCTCGATGGCAATCAAAATCA 232 consensus_935#1 TGGATTTTTTGCGGCGTAAAATGTTTCTCTACAAACCAGAT------ACAATCGTAAACG 199 ***** * ** * * * *** * * ***** ** * consensus_935#0 CCATACGATCCCCTCAAACGTAACGTCCCATCCCCTTATACAAAAT--AGCACGCAACAC 290 consensus_935#1 CATTATAATGGTCGTAAA--TCACTTTAAATAACCTTGAAAGACCTCGAGAAACCAACAT 257 * ** ** * *** * ** * ** **** * * * ** * ***** consensus_935#0 AACGTTCCTTCCAACTTATCTGCAAGTAACATTCCGTCCCATCCAGTATCACCGACGATG 350 consensus_935#1 ATTGATTCGCACAAGCCA-CTGCGGG--AGTTGCGATGCCAACGTATCACAATGCGGGTG 314 * * * * *** * **** * * * * * *** * * ** * * ** consensus_935#0 ACTACGCATTCGAACGTCACCACTCCTAATATAACCAGTCACA-TGAATACCGGATCAAC 409 consensus_935#1 G-TGGATACCCGAATGT-GTCAGCGCCAGCGCGGCAAGCGAAGCTCGATGGCA-ATCAAA 371 * * **** ** ** * * * ** * * ** * ***** consensus_935#0 GCCGGTA-ATCCTCACTTCGAATGTCACGAATCCTAGCAATCCTGCTGCGTTATCGGTGA 468 consensus_935#1 ATCACCATACGATCCCCTCAAACGTAACG--TCCCATC--CCCTTATACAAAATAGCA-- 425 * * * ** * ** ** ** *** *** * * *** * * ** * consensus_935#0 ATCCGAGGCACGAGGTCAAACTGAACGCTATGCCATGGTTCCACGGGAAGATATCAAGGG 528 consensus_935#1 ------------------------------------------------------------ consensus_935#0 AAAC 532 consensus_935#1 ---- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |