|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[TGATAAAGGGCTGAGGGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGAAGTCATCGAGCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTGGCAGCCGAGGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGTCAGTAACGAAGGAAGAGAAAGAAAAAGAGAACACGAGAAAAGTTGCTCCGGTTACTGCCGCGATGACCATGCCTCCCGCGGGTCGGCCATCTTCGGTTCAAGCTAGACCCATTCATGGAATTTTGCAGGATGATTCTAAAGCGGATACGGAAAGAGCTATTGCTCGCGCAAGAAAAGATTTCTTGATCCGCCATCATCTGGATCGTACTACTGGCGTGGGCGATGGTGCACTGCTTCCCTCTCCAACGAGAGAAAAGTTGGAGCCCGTGATACCACGACGTCGAGAGGAGACGAAAGAGCACCGCGAAGAAATTCAGCCTAAAACGAAATCCAGCCCTAAGAACAGTCCAAGAACCGGTCGTTCGCAGAGTCTTGGTCCAACTGTGACTGAACGTCGATCACCTAAACGTCA]
[+] EMBL BI509807 [TGATAAAGGGCTGAGGGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGAAGTCATCGAGCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTGGCAGCCGAGGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGTCAGTAACGAAGGAAGAGAAAGAAAAAGAGAACACGAGAAAAGTTGCTCCGGTTACTGCCGCGATGACCATGCCTCCCGCGGGTCGGCCATCTTCGGTTCAAGCTAGACCCATTCATGGAATTTTGCAGGATGATTCTAAAGCGGATACGGAAAGAGCTATTGCTCGCGCAAGAAAAGATTTCTTGATCCGCCATCATCTGGATCGTACTACTGGCGTGGGCGATGGTGCACTGCTTCCCTCTCCAACGAGAGAAAAGTTGGAGCCCGTGATACCACGACGTCGAGAGGAGACGAAAGAGCACCGCGAAGAAATTCAGCCTAAAACGAAATCCAGCCCTAAGAACAGTCCAAGAACCGGTCGTTCGCAGAGTCTTGGTCCAACTGTGACTGAACGTCGATCACCTAAACGTCA]
consensusID : consensus_937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 582 fasta sequence
[GGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGNAGTCATCGAGCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTNNNAGCCGAGGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGCCAGTACACTATTCCACTCTCAAACGTCATTTTCAATGTCGCTACTGACGATCGAAATCGACAGTAAGAGATGTTAGTTTAACCCGATTAATAGAAAACGTAACGAAACGGTCACTGGTTCTACGGGAAAAGTATATATAACGAATGAATTGACTAAGGAATAAAACGTCGTTAGAAATAATCGTAACTGTTTGATGTCAAACACGACTGTACATAACATGGCATACGATTACTTTATTCGTCGACTACACGATTTAATCGATCATTTTTCATGTTTACACAAGTAATATAGGAACTCGTATCAACGTGTAACGGAACACGTTTAAATTCTGCTGTGCGTGTCATGACAAAAAGAAAAAAACGACGTCGATGAATTAATTAATTAGACAATTAGATAATTTCATTTATTA]
[-] EMBL BI505595 [GGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGNAGTCATCGAGCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTNNNAGCCGAGGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGCCAGTACACTATTCCACTCTCAAACGTCATTTTCAATGTCGCTACTGACGATCGAAATCGACAGTAAGAGATGTTAGTTTAACCCGATTAATAGAAAACGTAACGAAACGGTCACTGGTTCTACGGGAAAAGTATATATAACGAATGAATTGACTAAGGAATAAAACGTCGTTAGAAATAATCGTAACTGTTTGATGTCAAACACGACTGTACATAACATGGCATACGATTACTTTATTCGTCGACTACACGATTTAATCGATCATTTTTCATGTTTACACAAGTAATATAGGAACTCGTATCAACGTGTAACGGAACACGTTTAAATTCTGCTGTGCGTGTCATGACAAAAAGAAAAAAACGACGTCGATGAATTAATTAATTAGACAATTAGATAATTTC ]
[-] EMBL BI506777 [ GCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCTTGCCAGGCCAGTACACTATTCCACTCTCAAACGTCATTTTCAATGTCGCTACTGACGATCGAAATCGACAGTAAGAGATGTTAGTTTAACCCGATTAATAGAAAACGTAACGAAACGGTCACTGGTTCTACGGGAAAAGTATATATAACGAATGAATTGACTAAGGAATAAAACGTCGTTAGAAATAATCGTAACTGTTTGATGTCAAACACGACTGTACATAACATGGCATACGATTACTTTATTCGTCGACTACACGATTTAATCGATCATTTTTCATGTTTACACAAGTAATATAGGAACTCGTATCAACGTGTAACGGAACACGTTTAAATTCTGCTGTGCGTGTCATGACAAAAAGAAAAAAACGACGTCGATGAATTAATTAATTAGACAATTAGATAATTTCATTTATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_937#0 TGATAAAGGGCTGAGGGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGAAGTCATCGA 60
consensus_937#1 ---------------GGAGAAACCGCAGGAGAAACCGTTTCCCACTGCTGNAGTCATCGA 45
*********************************** *********
consensus_937#0 GCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTGGCAGCCGA 120
consensus_937#1 GCTTAGACGACTCGCTGACGAGTACAAGCATCGCGACTGGGGTTGCGGTCTNNNAGCCGA 105
*************************************************** ******
consensus_937#0 GGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCT 180
consensus_937#1 GGACGAGGCTTCGCTGTGGAAACGGGTCTCCAGTAACCACGCTCTCAACGCGCTGTCCCT 165
************************************************************
consensus_937#0 TGCCAGGTCAGTAACGAAGGAAGAGAAAGAAAAAGAGAACACGAGAAAAGTTGCTCCGGT 240
consensus_937#1 TGCCAGGCCAGTACACTATT-----CCACTCTCAAACGTCATTTTCAATGTCGCTACTG- 219
******* ***** * * * * ** ** ** *** * *
consensus_937#0 TACTGCCGCGATGACCATGCCTCCCGCGGGTCGGCCATCTTCGGTTCAAGCTAGACCCAT 300
consensus_937#1 -ACGATCGAAATCGACAG---TAAGAGATGTTAGTTTAACCCGATTAATAGAAAACGTA- 274
** ** ** ** * ** * ** ** * * ** *
consensus_937#0 TCATGGAATT-TTGCAGGATGATTCTAAAGCGGATACGGAAAGAGCTA-TTGCTCGCGCA 358
consensus_937#1 --ACGAAACGGTCACTGGTTCTACGGGAAAAGTATATATAACGAATGAATTGACTAAGGA 332
* * ** * * ** * ** * *** ** ** * *** * *
consensus_937#0 AGAAAAGATTTCTTGAT----CCGCCATCATCTGGATCGTACTACTGGCGTGGGCGA--T 412
consensus_937#1 ATAAAACGTCGTTAGAAATAATCGTAACTGTTTGATGTCAAACACGACTGTACATAACAT 392
* **** * * ** ** * * ** * ** ** * *
consensus_937#0 GGTGCACTGCTTCCCTCTCCAACGAGAGAAAAGTTGGAGCCCGTGATACCACGACGTCGA 472
consensus_937#1 GGCATACGATTACTTTATTCGTCGACTACACGATTTAA-TCGATCATTTTTC-ATGTTTA 450
** ** * * * * * *** * ** * * * ** * * ** *
consensus_937#0 GAGGAGACGAAAGAGCACCGCGAAGAAATTCAGCCTAAAACGAAATCCAGCCCTAAGAAC 532
consensus_937#1 CACAAG-TAATATAGGAACTCGTATCAACGTGTAACGGAACACGTTTAAATTCTGCTGTG 509
* ** * * ** * * ** * ** *** * * **
consensus_937#0 AGTCCAAGAACCGGTCGTTCGCAGAGTCTTGGTCCAACTG--TGACTGAACG--TCGATC 588
consensus_937#1 CGTGTCATGACAAAAAGAAAAAAACGACGTCGATGAATTAATTAATTAGACAATTAGATA 569
** * ** * * * * * * ** * * * * ** * ***
consensus_937#0 ACCTAAAC-GTCA 600
consensus_937#1 ATTTCATTTATTA 582
* * * * *
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |