|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 675 fasta sequence
[TTAACGTGCAAACAAGTGTTAAACATCATGGTGATCTTTGGTTTCATGTTAAATTATATGTTACGTGTAAACATGACGATTGCCATAGTATCAATGGTGATTCCAAGCAAGGACAGTTCACACTCGAGCAGCTATAATAGAACAAACGAGTGCTTCGATCACGAAATCAAAATAAACGTTTCTCTGCACAATAACGAATCAGCGATGATCGCTTCTAATTCTACTATATCTTCGTTCCCCTATCCACCTAGGCACGAAGAAATTAATCAAACGAGATATCCGTGGAACGAATATGAAGTTAATATCATATTGGGCAGTTTTTTCTGGGGTTACATATGTACCGAGTTACCGGGTGGACGACTCGCTGAAATAATAGGACCTAAAAAAGTTTTTGGATACAGTATGTTAGTATCCAGCGCTGTTACATTTTTAACACCCTGGTTGGCAACTTATGGTTATATCGCAGTTGCCATGTTAAGAACAGTAATTGGATTTATGTTGGGAGCTACTTGGCCTGCCATCCAACCAATGACCGCCCGATGGATACCACCAACGGAACGCAGCAAATTTGTCTCAAATATGATGGGTAAATAAATGTATGGATTATAAAATAAAATGGAAGGAAACATTTAGATAAATTTTTTTTTTAATATTCGTAATTTTCAATAAAAAAAA]
[+] EMBL BI510010 [TTAACGTGCAAACAAGTGTTAAACATCATGGTGATCTTTGGTTTCATGTTAAATTATATGTTACGTGTAAACATGACGATTGCCATAGTATCAATGGTGATTCCAAGCAAGGACAGTTCACACTCGAGCAGCTATAATAGAACAAACGAGTGCTTCGATCACGAAATCAAAATAAACGTTTCTCTGCACAATAACGAATCAGCGATGATCGCTTCTAATTCTACTATATCTTCGTTCCCCTATCCACCTAGGCACGAAGAAATTAATCAAACGAGATATCCGTGGAACGAATATGAAGTTAATATCATATTGGGCAGTTTTTTCTGGGGTTACATATGTACCGAGTTACCGGGTGGACGACTCGCTGAAATAATAGGACCTAAAAAAGTTTTTGGATACAGTATGTTAGTATCCAGCGCTGTTACATTTTTAACACCCTGGTTGGCAACTTATGGTTATATCGCAGTTGCCATGTTAAGAACAGTAATTGGATTTATGTTGGGAGCTACTTGGCCTGCCATCCAACCAATGACCGCCCGATGGATACCACCAACGGAACGCAGCAAATTTGTCTC AATATGATGGGTAAATAAATGTATGGATTATAAAATAAAATGGAAGGAAACATTTA ]
[+] EMBL BI506380 [ aGGTGGACGACTCGCTGAAATAATAGGACCTAAAAAAGTTTTTGGATACAGTATGTTAGTATCCAGCGCTGTTACATTTTTAACACCCTGGTTGGCAACTTATGGTTATATCGCAGTTGCCATGTTAAGAACAGTAATTGGATTTATGTTGGGAGCTACTTGGCCTGCCATCCAACCAATGACCGCCCGATGGATACCACCAACGGAACGCAGCAAATTTGTCTCAAATATGATGGGTAAATAAATGTATGGATTATAAAATAAAATGGAAGGAAACATTTAGATAAATTTTTTTTTTAATATTCGTAATTTTCAATAAAAAAAA]
consensusID : consensus_977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence
[TTCCAAGCAAGGACAGTTCACACTCGAGCAGCTATAATAGAACAAACGAGTGCTTCGATCACGAAATCAAAATAAACGTTNCTCTGCACAATAACGAATCAGCGATGATCGCTTCTAATTCTACTATATCTTCGTTCCCCTATCCACCTAGGCACGAAGAAATTAATCAAACGAGATATCCGTGGAACGAATATGAAGTTAATATCATATTGGGCAGTTTTTTCTGGGGTTACATATGTACCGAGTTACCGGGTGGACGACTCGCTGAAATAATAGGACCTAAAAAAGTTTTTGGATACAGTATGTTAGTATCCAGCGCTGTTACATTTTTAACACCCTGGTTGGCAACTTATGGTTATATCGCAGTTGCCATGTTAAGAACAGTAATTGGATTTATGTTGGGAGCTACTTGGCCTGCCATCCAACCAATGACCGCCCGATGGATACCACCAACGGAACGCAGCAAATTTGTCTCAAATATGATGGCTTCATCGCTTGGAGCAGCATTAACAATGCCAATTTGCGGATTTTTAATTGCTTACTTTGGATGGGAATCTGTATTCTACGTAACAGGAACAATAGGTCTCATGTGGAGTATAGCTTGGTTTCTCTTAATATTTGACTCTCCCGCTCCAACA]
[-] EMBL BI504690 [TTCCAAGCAAGGACAGTTCACACTCGAGCAGCTATAATAGAACAAACGAGTGCTTCGATCACGAAATCAAAATAAACGTTNCTCTGCACAATAACGAATCAGCGATGATCGCTTCTAATTCTACTATATCTTCGTTCCCCTATCCACCTAGGCACGAAGAAATTAATCAAACGAGATATCCGTGGAACGAATATGAAGTTAATATCATATTGGGCAGTTTTTTCTGGGGTTACATATGTACCGAGTTACCGGGTGGACGACTCGCTGAAATAATAGGACCTAAAAAAGTTTTTGGATACAGTATGTTAGTATCCAGCGCTGTTACATTTTTAACACCCTGGTTGGCAACTTATGGTTATATCGCAGTTGCCATGTTAAGAACAGTAATTGGATTTATGTTGGGAGCTACTTGGCCTGCCATCCAACCAATGACCGCCCGATGGATACCACCAACGGAACGCAGCAAATTTGTCTCAAATATGATGGCTTCATCGCTTGGAGCAGCATTAACAATGCCAATTTGCGGATTTTTAATTGCTTACTTTGGATGGGAATCTGTATTCTACGTAACAGGAACAATAGGTCTCATGTGGAGTATAGCTTGGTTTCTCTTAATATTTGACTCTCCCGCTCCAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_977#0 TTAACGTGCAAACAAGTGTTAAACATCATGGTGATCTTTGGTTTCATGTTAAATTATATG 60
consensus_977#1 ------------------------------------------------------------
consensus_977#0 TTACGTGTAAACATGACGATTGCCATAGTATCAATGGTGATTCCAAGCAAGGACAGTTCA 120
consensus_977#1 ----------------------------------------TTCCAAGCAAGGACAGTTCA 20
********************
consensus_977#0 CACTCGAGCAGCTATAATAGAACAAACGAGTGCTTCGATCACGAAATCAAAATAAACGTT 180
consensus_977#1 CACTCGAGCAGCTATAATAGAACAAACGAGTGCTTCGATCACGAAATCAAAATAAACGTT 80
************************************************************
consensus_977#0 TCTCTGCACAATAACGAATCAGCGATGATCGCTTCTAATTCTACTATATCTTCGTTCCCC 240
consensus_977#1 NCTCTGCACAATAACGAATCAGCGATGATCGCTTCTAATTCTACTATATCTTCGTTCCCC 140
***********************************************************
consensus_977#0 TATCCACCTAGGCACGAAGAAATTAATCAAACGAGATATCCGTGGAACGAATATGAAGTT 300
consensus_977#1 TATCCACCTAGGCACGAAGAAATTAATCAAACGAGATATCCGTGGAACGAATATGAAGTT 200
************************************************************
consensus_977#0 AATATCATATTGGGCAGTTTTTTCTGGGGTTACATATGTACCGAGTTACCGGGTGGACGA 360
consensus_977#1 AATATCATATTGGGCAGTTTTTTCTGGGGTTACATATGTACCGAGTTACCGGGTGGACGA 260
************************************************************
consensus_977#0 CTCGCTGAAATAATAGGACCTAAAAAAGTTTTTGGATACAGTATGTTAGTATCCAGCGCT 420
consensus_977#1 CTCGCTGAAATAATAGGACCTAAAAAAGTTTTTGGATACAGTATGTTAGTATCCAGCGCT 320
************************************************************
consensus_977#0 GTTACATTTTTAACACCCTGGTTGGCAACTTATGGTTATATCGCAGTTGCCATGTTAAGA 480
consensus_977#1 GTTACATTTTTAACACCCTGGTTGGCAACTTATGGTTATATCGCAGTTGCCATGTTAAGA 380
************************************************************
consensus_977#0 ACAGTAATTGGATTTATGTTGGGAGCTACTTGGCCTGCCATCCAACCAATGACCGCCCGA 540
consensus_977#1 ACAGTAATTGGATTTATGTTGGGAGCTACTTGGCCTGCCATCCAACCAATGACCGCCCGA 440
************************************************************
consensus_977#0 TGGATACCACCAACGGAACGCAGCAAATTTGTCTCAAATATGATGGGTAAATAAATGTAT 600
consensus_977#1 TGGATACCACCAACGGAACGCAGCAAATTTGTCTCAAATATGATGGCTTCATCGCTTGGA 500
********************************************** * ** *
consensus_977#0 GGATTATAAAATAAAATGGAAGG-AAACATTTAGATAAATTTTTTTTTTAATATTCGTAA 659
consensus_977#1 GCAGCATTAACAATGCCAATTTGCGGATTTTTAATTGCTTACTTTGGATGGGAATCTGTA 560
* * ** ** * * * **** * * *** * * ** *
consensus_977#0 TTTTCAATAAAAAAAA-------------------------------------------- 675
consensus_977#1 TTCTACGTAACAGGAACAATAGGTCTCATGTGGAGTATAGCTTGGTTTCTCTTAATATTT 620
** * *** * **
consensus_977#0 ------------------
consensus_977#1 GACTCTCCCGCTCCAACA 638
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |