These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 555 fasta sequence [GTTGCACGATAAGTTTGCGGGGAGGGGGAAAGAAAAAAAGAGGAAAGCCGAAGCTGATGGCAAGATTTGCGAGAGTTGCGTTCAATGGCCGGAAAGGTGTCTGCCGATGGCGCGTACAACCGTGTTCATGCTCCCGATCTCGCGACGAATGCCACGAATTACGCGATATTTTCGGTCCTTTTGTTCGCGTGATTAATTCAAACTCGATACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGGAGCGAGAGAGAGTTCGAGTAGTAGCGAAAGCAGTATCACGCAGAAATTCGGTTTTAGTGAGGTTGATTTCGCAAGTGTTTTGAGAACTAGATGTCAGAGACGATCCATGAAGAATTCGATTTTGCAATAAAAGTGGAGAAAGAGAGGGAGAGATGTCAAGAGATTTTAAGTAACGAGTATTAATCCTTTGCACTCGATTGTCGTTGGTTTCGTACGAAAGGATTCGAACGAAGAGGTAAAATTAGTAGATNAGTATGTAGCGTGTCTTGGCAAATGATAGATTCTAGATGAAAAA] [+] EMBL BI505771 [GTTGCACGATAAGTTTGCGGGGAGGGGGAAAGAAAAAAAGAGGAAAGCCGAAGCTGATGGCAAGATTTGCGAGAGTTGCGTTCAATGGCCGGAAAGGTGTCTGCCGATGGCGCGTACAACCGTGTTCATGCTCCCGATCTCGCGACGAATGCCACGAATTACGCGATATTTTCGGTCCTTTTGTTCGCGTGATTAATTCAAACTCGATACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGGAGCGAGAGAGAGTTCGAGTAGTAGCGAAAGCAGTATCACGCAGAAATTCGGTTTTAGTGAGGTTGATTTCGCAAGTGTTTTGAGAACTAGATGTCAGAGACGATCCATGAAGAATTCGATTTTGCAATAAAAGTGGAGAAAGAGAGGGAGAGATGTCAAGAGATTTTAAGTAACGAGTATTAATCCTTTGCACTCGATTGTCGTTGGTTTCGTACGAAAGGATTCGAACGAAGAGGTAAAATTAGTAGATNAGTATGTAGCGTGTCTTGGCAAATGATAGATTCTAGATGAAAA ] [+] EMBL BI507066 [ TTTGCGAGAGTTGCGTTCAATGGCCGGAAAGGTGTCTGCCGATGGCGCGTACAACCGTGTTCATGCTCCCGATCTCGCGACGAATGCCACGAATTACGCGATATTTTCGGTCCTTTTGTTCGCGTGATTAATTCAAACTCGATACAC AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGGAGCGAGAGAGAGTTCGAGTAGTAGCGAAAGCAGTATCACGCAGAAATTCGGTTTTAGTGAGGTTGATTTCGCAAGTGTTTTGAGAACTAGATGTCAGAGACGATCCATGAAGAATTCGATTTTGCAATAAAAGTGGAGAAAGAGAGGGAGAGATGTCAAGAGATTTTAAGTAACGAGTATTAATCCTTTGCACTCGATTGTCGTTGGTTTCGTACGAAAGGATTCGAACGAAGAGGTAAAATTAGTAGATAAGTATGTAGCGTGTCTTGGCAAATGATAGATTCTAGATGAAAAA] consensusID : consensus_995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [CATGAAGAATTCGATTTTGCAATAAAAGTGGGGAAAGAAAAAAAGAGGAAAGCCGAAGCTGATGGCAAGATTTGCGAGAGTTGCGTTCAATGGCCGGAAAGGTGTCTGCCGATGGCGCGTACAACCGTGTTCATGCTCCCGATCTCGCGACGAATGCCACGAATTACGCGATATTTTCGGTCCTTTTGTTCGCGTGATTAATTCAAACTCGATACACAGAGAGAGAGAGAGAGAGAAAGAAAAAAAAAAAAGAAAAAAAGTTGCACGATAAGTTTGCGGGGAGGGGGAAAGAAAAAAAAAAAAAAAAAAAAGTGGAATGGAAAGTTTGCACCGTTGTTCCCTAAGACTTATGGCGTATTGTATGTACCTATTTCCATAAGTGCACGCTCGAGCGCGAATCGGAGAACGAGTCGATCCAGGCTCCGAGCTCGAGCCCAAAACCGAGAATAATATAAAATAAAAAAAAAAATTCTTCGAAACGAGCCGAACGAATTCCGTTTTTTCTTTTTGTCGCG] [+] EMBL BI507976 [CATGAAGAATTCGATTTTGCAATAAAAGTGGGGAAAGAAAAAAAGAGGAAAGCCGAAGCTGATGGCAAGATTTGCGAGAGTTGCGTTCAATGGCCGGAAAGGTGTCTGCCGATGGCGCGTACAACCGTGTTCATGCTCCCGATCTCGCGACGAATGCCACGAATTACGCGATATTTTCGGTCCTTTTGTTCGCGTGATTAATTCAAACTCGATACACAGAGAGAGAGAGAGAGAGAAAGAAAAAAAAAAAAGAAAAAAAGTTGCACGATAAGTTTGCGGGGAGGGGGAAAGAAAAAAAAAAAAAAAAAAAAGTGGAATGGAAAGTTTGCACCGTTGTTCCCTAAGACTTATGGCGTATTGTATGTACCTATTTCCATAAGTGCACGCTCGAGCGCGAATCGGAGAACGAGTCGATCCAGGCTCCGAGCTCGAGCCCAAAACCGAGAATAATATAAAATAAAAAAAAAAATTCTTCGAAACGAGCCGAACGAATTCCGTTTTTTCTTTTTGTCGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_995#0 GTTGCACGAT--AAGTTTGCGGGGAG---GGGGAAAGAAAAAAAGAGGAAAGCCGAAGCT 55 consensus_995#1 CATGAAGAATTCGATTTTGCAATAAAAGTGGGGAAAGAAAAAAAGAGGAAAGCCGAAGCT 60 ** * ** * ***** * ******************************* consensus_995#0 GATGGCAAGATTTGCGAGAGTTGCGTTCAATGGCCGGAAAGGTGTCTGCCGATGGCGCGT 115 consensus_995#1 GATGGCAAGATTTGCGAGAGTTGCGTTCAATGGCCGGAAAGGTGTCTGCCGATGGCGCGT 120 ************************************************************ consensus_995#0 ACAACCGTGTTCATGCTCCCGATCTCGCGACGAATGCCACGAATTACGCGATATTTTCGG 175 consensus_995#1 ACAACCGTGTTCATGCTCCCGATCTCGCGACGAATGCCACGAATTACGCGATATTTTCGG 180 ************************************************************ consensus_995#0 TCCTTTTGTTCGCGTGATTAATTCAAACTCGATACACAGAGAGAGAGAGAGAGAGAGAGA 235 consensus_995#1 TCCTTTTGTTCGCGTGATTAATTCAAACTCGATACACAGAGAGAGAGAGAGAGAGAAAGA 240 ******************************************************** *** consensus_995#0 GAGAGAGAGAGAGAGAGAGAAAGGGAGCGAGAGAGAGTTCGAGTAGTAGCGAAAGCAGTA 295 consensus_995#1 AAAAAAAAAAAGAAA----AAAAGTTGCACGATA-AGTTTGCGGGGAGGGGGAAAGAAAA 295 * * * * * * *** * ** ** * **** * * * * * ** * * consensus_995#0 TCACGCAGAAATTCGGTTTTAGTGAGGTTGATTTCGCAAGTGTTTTGAGAACTAGATGTC 355 consensus_995#1 AAAAAAAAAAAAAAAAGTGGAATGGAAA-GTTTGCACCGTTGTTCC-----CTAAGACTT 349 * * *** * * ** * ** * * **** *** * consensus_995#0 AGAGACGATCCATGAAGAATTCGATTTTGCAATAAAAGTGGAGAAAGAGAGGGAGAGATG 415 consensus_995#1 AT-GGCGTATTGT-ATGTACCTATTTCCATAAGTGCACGCTCGAGCGCGAATCGGAGAA- 406 * * ** * * * * ** ** * ** * ** **** consensus_995#0 TCAAGAGATTTTAAGTAACGAGTATTAATCCTTTGCACTCGATTGTCGTTGGTTTCGTAC 475 consensus_995#1 -CGAGTCGATCCAGGCTCCGAGCTCGAGCCC---AAAACCGAGAATAATATAAAATAAAA 462 * ** * * * **** * ** * *** * * * consensus_995#0 GAAAGGATTCGAACGAAGAGGTAAAATTAGTAGATNAGTATGTAGCGTGTCTTGGCAAAT 535 consensus_995#1 AAAAAAATTCTTCGAAACGAGCCGAACGAAT---TCCGT-TTTTTCTTTTTGTCGCG--- 515 *** **** ** * ** * * * ** * * * * * * ** consensus_995#0 GATAGATTCTAGATGAAAAA 555 consensus_995#1 -------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |