These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1485 fasta sequence [AGACACCACCCTACCCCAATCATGTCTCCAAGGATCCCGACGAGGGCGAACCTCGCCCTCGCCGCCCTCCTCATCCTCCTCACCATCGCCGCCACCACCCTCGCATCGGCGAAGTGCATCGCGAAGAACAAACCCGAAGGCGAGGAGGGGGAACCCAGTGGTGCGGGCGCGGCTGCGGCCCACGCTTCACCGGAGAAGAAACCCGGCTCCAACGGCGGGTTAACCACCATGTCCGTCGGTGAGAGCGTACCGGAGATCAAGAAGGACTCCTCCGATGATGGCGCCGCCGTGAATGAGAGCAAGAAACCTAAATCCAGTGGCGGCTTGACTACCCTCTCCGTCGATGATAGTCAAGCAGAACCCGCGGACAGTATAGCAGAACCCGTGGAAGATGGCACCGACGACGGCGAGGATGAGTCGGAGAAAAAGAAGAAGAAGAAGAAGAAGAAATCCAAAAGCAAGAGCTCCGATGATGATGATGATGATGCCGAGAAGAAATCCAAGAAGAAATCGAAGAACTCGGACGACGATGAAGATGACAAGAAGAAATCCAAGAAGAAACCCAAGAACCCGGACGACGATGAAGATGACAAGAAGAAATCGAAAAAGAAGAGCTCCGATGAAGACAACGACGGTGCCAAGAAGAAGAAGAAGAAGAAATCCAAGGGCAAGAGCTCCGATGAGGAAGATGATGAAAAGCCCAAGAAGAAATCCAAAAGCAAGAGCAAATCCTCCTCCTCCGACGAAGAAGATGAGAAGAAATCAAAATCCGAGGGCCAAGCCGCGGCCAAACCAAAGGAAGAAGACGAGGAAGGCGGCTCGGCATCGGCATCGGCATCGACATCGGCGCCGAAGAATGAGCACCACTCGGGCACCATGTCGCTCCCGGACCCGGACATGATCGCGCAGCCGGTGATGCAGGCGCTGAACCCAGTGGTGAAGGCGCTGTGCGGCAAGACGGACCACGCCGACCTGTGCGAGTCCTCCATCGGGCAGCTGCCGCAGCAGCCGCCGGCGCAGCTGGACGACATCGGCGTCCTCAGGCTCTCCATGAACGCGCTGCGCGCCAAGGTGCAGGAGGCGATCAGCGTGGCGACGAACAGGATGGGGGCGGCCTCCGGGGACGAGGTGTCCAAGGACGCCATGGGCGACTGCCTCCAGATGTACGACGACATGAAATCCAACCTGGACTCGGCGGACGCGGCGCTCAAGAAGGGGGACAAGGACACGGCGCACACCATGCTCGACTCCGCGCGCACCGACGTCGACACCTGCGAGGACGGCTTCAGCGAGCGGGAGGGGCTCAAGCCGATCATGGGCGACCTCGACAAGATCCTCGCCGAGCTCTCCAGCAACACCATCGCCATTGCCTCCGCCATAATTGAGTGACTCATCTCATTTTCTCTCTGTCTTTCTCCCTCTGACCGTCTTGAACAAACAACTGAAGTGTATGTAGTATGTACCGAGTGTTTCAAAAGCTGAAAC] [+] EMBL AK069580 [AGACACCACCCTACCCCAATCATGTCTCCAAGGATCCCGACGAGGGCGAACCTCGCCCTCGCCGCCCTCCTCATCCTCCTCACCATCGCCGCCACCACCCTCGCATCGGCGAAGTGCATCGCGAAGAACAAACCCGAAGGCGAGGAGGGGGAACCCAGTGGTGCGGGCGCGGCTGCGGCCCACGCTTCACCGGAGAAGAAACCCGGCTCCAACGGCGGGTTAACCACCATGTCCGTCGGTGAGAGCGTACCGGAGATCAAGAAGGACTCCTCCGATGATGGCGCCGCCGTGAATGAGAGCAAGAAACCTAAATCCAGTGGCGGCTTGACTACCCTCTCCGTCGATGATAGTCAAGCAGAACCCGCGGACAGTATAGCAGAACCCGTGGAAGATGGCACCGACGACGGCGAGGATGAGTCGGAGAAAAAGAAGAAGAAGAAGAAGAAGAAATCCAAAAGCAAGAGCTCCGATGATGATGATGATGATGCCGAGAAGAAATCCAAGAAGAAATCGAAGAACTCGGACGACGATGAAGATGACAAGAAGAAATCCAAGAAGAAACCCAAGAACCCGGACGACGATGAAGATGACAAGAAGAAATCGAAAAAGAAGAGCTCCGATGAAGACAACGACGGTGCCAAGAAGAAGAAGAAGAAGAAATCCAAGGGCAAGAGCTCCGATGAGGAAGATGATGAAAAGCCCAAGAAGAAATCCAAAAGCAAGAGCAAATCCTCCTCCTCCGACGAAGAAGATGAGAAGAAATCAAAATCCGAGGGCCAAGCCGCGGCCAAACCAAAGGAAGAAGACGAGGAAGGCGGCTCGGCATCGGCATCGGCATCGACATCGGCGCCGAAGAATGAGCACCACTCGGGCACCATGTCGCTCCCGGACCCGGACATGATCGCGCAGCCGGTGATGCAGGCGCTGAACCCAGTGGTGAAGGCGCTGTGCGGCAAGACGGACCACGCCGACCTGTGCGAGTCCTCCATCGGGCAGCTGCCGCAGCAGCCGCCGGCGCAGCTGGACGACATCGGCGTCCTCAGGCTCTCCATGAACGCGCTGCGCGCCAAGGTGCAGGAGGCGATCAGCGTGGCGACGAACAGGATGGGGGCGGCCTCCGGGGACGAGGTGTCCAAGGACGCCATGGGCGACTGCCTCCAGATGTACGACGACATGAAATCCAACCTGGACTCGGCGGACGCGGCGCTCAAGAAGGGGGACAAGGACACGGCGCACACCATGCTCGACTCCGCGCGCACCGACGTCGACACCTGCGAGGACGGCTTCAGCGAGCGGGAGGGGCTCAAGCCGATCATGGGCGACCTCGACAAGATCCTCGCCGAGCTCTCCAGCAACACCATCGCCATTGCCTCCGCCATAATTGAGTGACTCATCTCATTTTCTCTCTGTCTTTCTCCCTCTGACCGTCTTGAACAAACAACTGAAGTGTATGTAGTATGTACCGAGTGTTTCAAAAGCTGAAAC] consensusID : consensus_1#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [CCAGAGGCCCAGCCAAGGGGGGCAAGGCCCCGGCGCCCCCCATGCTCGACTCCGCGGGCGCCGAGGTCTACACCTTCCAGGACGGCTTCAGCGAGCGCGAGGGGCTCAAGCCGATCATGGGTGACCTCGCCAAGATCCTCGCCGAGCTTTCCAGCAACACCATTGCCATTGCCTCCGCCATAATTGAGTGACTCATCTCATTTTCTCTCTGTCTTTCTCCCTCTGACCGTCTTGAACAAACAACTGAAGTGTATGTAGTATGTCCCGAGTGTTTCAAAAGCTGAAACTGCCTTATGTATCTGTCCCCTTATGATTGATTATTATGCCTTGTGAAATTGTGAATTGTGATTATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA761561 [CCAGAGGCCCAGCCAAGGGGGGCAAGGCCCCGGCGCCCCCCATGCTCGACTCCGCGGGCGCCGAGGTCTACACCTTCCAGGACGGCTTCAGCGAGCGCGAGGGGCTCAAGCCGATCATGGGTGACCTCGCCAAGATCCTCGCCGAGCTTTCCAGCAACACCATTGCCATTGCCTCCGCCATAATTGAGTGACTCATCTCATTTTCTCTCTGTCTTTCTCCCTCTGACCGTCTTGAACAAACAACTGAAGTGTATGTAGTATGTCCCGAGTGTTTCAAAAGCTGAAACTGCCTTATGTATCTGTCCCCTTATGATTGATTATTATGCCTTGTGAAATTGTGAATTGTGATTATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1#0 AGACACCACCCTACCCCAATCATGTCTCCAAGGATCCCGACGAGGGCGAACCTCGCCCTC 60 consensus_1#1 ------------------------------------------------------------ consensus_1#0 GCCGCCCTCCTCATCCTCCTCACCATCGCCGCCACCACCCTCGCATCGGCGAAGTGCATC 120 consensus_1#1 ------------------------------------------------------------ consensus_1#0 GCGAAGAACAAACCCGAAGGCGAGGAGGGGGAACCCAGTGGTGCGGGCGCGGCTGCGGCC 180 consensus_1#1 ------------------------------------------------------------ consensus_1#0 CACGCTTCACCGGAGAAGAAACCCGGCTCCAACGGCGGGTTAACCACCATGTCCGTCGGT 240 consensus_1#1 ------------------------------------------------------------ consensus_1#0 GAGAGCGTACCGGAGATCAAGAAGGACTCCTCCGATGATGGCGCCGCCGTGAATGAGAGC 300 consensus_1#1 ------------------------------------------------------------ consensus_1#0 AAGAAACCTAAATCCAGTGGCGGCTTGACTACCCTCTCCGTCGATGATAGTCAAGCAGAA 360 consensus_1#1 ------------------------------------------------------------ consensus_1#0 CCCGCGGACAGTATAGCAGAACCCGTGGAAGATGGCACCGACGACGGCGAGGATGAGTCG 420 consensus_1#1 ------------------------------------------------------------ consensus_1#0 GAGAAAAAGAAGAAGAAGAAGAAGAAGAAATCCAAAAGCAAGAGCTCCGATGATGATGAT 480 consensus_1#1 ------------------------------------------------------------ consensus_1#0 GATGATGCCGAGAAGAAATCCAAGAAGAAATCGAAGAACTCGGACGACGATGAAGATGAC 540 consensus_1#1 ------------------------------------------------------------ consensus_1#0 AAGAAGAAATCCAAGAAGAAACCCAAGAACCCGGACGACGATGAAGATGACAAGAAGAAA 600 consensus_1#1 ------------------------------------------------------------ consensus_1#0 TCGAAAAAGAAGAGCTCCGATGAAGACAACGACGGTGCCAAGAAGAAGAAGAAGAAGAAA 660 consensus_1#1 ------------------------------------------------------------ consensus_1#0 TCCAAGGGCAAGAGCTCCGATGAGGAAGATGATGAAAAGCCCAAGAAGAAATCCAAAAGC 720 consensus_1#1 ------------------------------------------------------------ consensus_1#0 AAGAGCAAATCCTCCTCCTCCGACGAAGAAGATGAGAAGAAATCAAAATCCGAGGGCCAA 780 consensus_1#1 ------------------------------------------------------------ consensus_1#0 GCCGCGGCCAAACCAAAGGAAGAAGACGAGGAAGGCGGCTCGGCATCGGCATCGGCATCG 840 consensus_1#1 ------------------------------------------------------------ consensus_1#0 ACATCGGCGCCGAAGAATGAGCACCACTCGGGCACCATGTCGCTCCCGGACCCGGACATG 900 consensus_1#1 ------------------------------------------------------------ consensus_1#0 ATCGCGCAGCCGGTGATGCAGGCGCTGAACCCAGTGGTGAAGGCGCTGTGCGGCAAGACG 960 consensus_1#1 ------------------------------------------------------------ consensus_1#0 GACCACGCCGACCTGTGCGAGTCCTCCATCGGGCAGCTGCCGCAGCAGCCGCCGGCGCAG 1020 consensus_1#1 ------------------------------------------------------------ consensus_1#0 CTGGACGACATCGGCGTCCTCAGGCTCTCCATGAACGCGCTGCGCGCCAAGGTGCAGGAG 1080 consensus_1#1 ------------------------------------------------------------ consensus_1#0 GCGATCAGCGTGGCGACGAACAGGATGGGGGCGGCCTCCGGGGACGAGGTGTCCAAGGAC 1140 consensus_1#1 ------------------------------------------------------------ consensus_1#0 GCCATGGGCGACTGCCTCCAGATGTACGACGACATGAAATCCAACCTGGACTCGGCGGAC 1200 consensus_1#1 -----------------------------------------------------------C 1 * consensus_1#0 GCGGCGCTCAAG-AAGGGGGACAAGGACACGGCGCACACCATGCTCGACTCCGCGCGCAC 1259 consensus_1#1 CAGAGGCCCAGCCAAGGGGGGCAAGGCCCCGGCGCCCCCCATGCTCGACTCCGCGGGCGC 61 * ** ** ******* ***** * ****** * ***************** ** * consensus_1#0 CGACGTCGACACCTGCGAGGACGGCTTCAGCGAGCGGGAGGGGCTCAAGCCGATCATGGG 1319 consensus_1#1 CGAGGTCTACACCTTCCAGGACGGCTTCAGCGAGCGCGAGGGGCTCAAGCCGATCATGGG 121 *** *** ****** * ******************* *********************** consensus_1#0 CGACCTCGACAAGATCCTCGCCGAGCTCTCCAGCAACACCATCGCCATTGCCTCCGCCAT 1379 consensus_1#1 TGACCTCGCCAAGATCCTCGCCGAGCTTTCCAGCAACACCATTGCCATTGCCTCCGCCAT 181 ******* ****************** ************** ***************** consensus_1#0 AATTGAGTGACTCATCTCATTTTCTCTCTGTCTTTCTCCCTCTGACCGTCTTGAACAAAC 1439 consensus_1#1 AATTGAGTGACTCATCTCATTTTCTCTCTGTCTTTCTCCCTCTGACCGTCTTGAACAAAC 241 ************************************************************ consensus_1#0 AACTGAAGTGTATGTAGTATGTACCGAGTGTTTCAAAAGCTGAAAC-------------- 1485 consensus_1#1 AACTGAAGTGTATGTAGTATGTCCCGAGTGTTTCAAAAGCTGAAACTGCCTTATGTATCT 301 ********************** *********************** consensus_1#0 ------------------------------------------------------------ consensus_1#1 GTCCCCTTATGATTGATTATTATGCCTTGTGAAATTGTGAATTGTGATTATGCCAAAAAA 361 consensus_1#0 ----------------------- consensus_1#1 AAAAAAAAAAAAAAAAAAAAAAA 384 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||