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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10008#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 891 fasta sequence
[GCAGAACGTGTACCAGACTGTTAATGATGTAACACAATATGTACACAAGTATTTTCTTTACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGATACTGATGCTGCAGAGTGGAGGTAATATAAAGCTCCCGCAGCTTCTGTGGCAATTTCTCAGCACTGATCCCAGGACAATGTGAATTCTCTCA]
[+] EMBL CB632726 [GCAGAACGT TACCAGACTGTTAATGATGTAACACAATATGTACACAAGTATTTTCTTTACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGATACTGATGCTGCAGAGTGGAGGTAATATAAAGCTCCCGCAGCTTCTGTGGCAATTTCTCAGCACTGATCCCAGGACAATGTGAATTCTCTCA]
[+] EMBL CB632808 [GCAGAACGTGTACCAGACTGTTAATGATGTAACACAATATGTACACAAGTATTTTCTTTACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGATACTGATGCTGCAGAGTGGAGGTAATATAAAGCTCC ]
[+] EMBL CB627334 [ CAGAAGGTGTACCAGACTGTTAATGATGTAACCCAATATGTACACAAGTATTTTCTTTACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGATA ]
[+] EMBL CB629128 [ GTAACACAATATGTACACAAGTATTTTCTTTACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGATACTGATGCTGCAGAGTGGAGGTAATATAAAGCTCCCGCAGCTTCTGTGGC ]
consensusID : consensus_10008#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 792 fasta sequence
[TCCTTTTTTTTTTTAATGATGTAACACAATATGTACACAAGTATTTTCTT-TACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGAT]
[+] EMBL CB635545 [TCCTTTTTTTTTTTAATGATGTAACACAATATGTACACAAGTATTTTCTT TACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGAT]
[+] EMBL CB634085 [ ACAATATGTACACAAGTATTTTTTTATACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTCCCAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGAT ]
[+] EMBL CB628879 [ TATTTTCTT TACAATACGATAGATCGGGAAATGACAAGCTATGTTGAAGGGAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10008#0 GCAGAACGTGTACCAGACTGTTAATGATGTAACACAATATGTACACAAGTATTTTCTTTA 60
consensus_10008#1 --------TCCTTTTTTTTTTTAATGATGTAACACAATATGTACACAAGTATTTTCTTTA 52
* * ****************************************
consensus_10008#0 CAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAAC 120
consensus_10008#1 CAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAAC 112
************************************************************
consensus_10008#0 AATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTT 180
consensus_10008#1 AATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTT 172
************************************************************
consensus_10008#0 CCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCA 240
consensus_10008#1 CCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCA 232
************************************************************
consensus_10008#0 TAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTT 300
consensus_10008#1 TAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTT 292
************************************************************
consensus_10008#0 CTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTA 360
consensus_10008#1 CTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTA 352
************************************************************
consensus_10008#0 CTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGG 420
consensus_10008#1 CTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGG 412
************************************************************
consensus_10008#0 CGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTG 480
consensus_10008#1 CGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTG 472
************************************************************
consensus_10008#0 CAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAG 540
consensus_10008#1 CAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAG 532
************************************************************
consensus_10008#0 ATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAAC 600
consensus_10008#1 ATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAAC 592
************************************************************
consensus_10008#0 TGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACC 660
consensus_10008#1 TGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACC 652
************************************************************
consensus_10008#0 CAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATG 720
consensus_10008#1 CAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATG 712
************************************************************
consensus_10008#0 CCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCA 780
consensus_10008#1 CCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCA 772
************************************************************
consensus_10008#0 CGTCACGATGTAAAACAGATACTGATGCTGCAGAGTGGAGGTAATATAAAGCTCCCGCAG 840
consensus_10008#1 CGTCACGATGTAAAACAGAT---------------------------------------- 792
********************
consensus_10008#0 CTTCTGTGGCAATTTCTCAGCACTGATCCCAGGACAATGTGAATTCTCTCA 891
consensus_10008#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||