These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10008#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 891 fasta sequence [GCAGAACGTGTACCAGACTGTTAATGATGTAACACAATATGTACACAAGTATTTTCTTTACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGATACTGATGCTGCAGAGTGGAGGTAATATAAAGCTCCCGCAGCTTCTGTGGCAATTTCTCAGCACTGATCCCAGGACAATGTGAATTCTCTCA] [+] EMBL CB632726 [GCAGAACGT TACCAGACTGTTAATGATGTAACACAATATGTACACAAGTATTTTCTTTACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGATACTGATGCTGCAGAGTGGAGGTAATATAAAGCTCCCGCAGCTTCTGTGGCAATTTCTCAGCACTGATCCCAGGACAATGTGAATTCTCTCA] [+] EMBL CB632808 [GCAGAACGTGTACCAGACTGTTAATGATGTAACACAATATGTACACAAGTATTTTCTTTACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGATACTGATGCTGCAGAGTGGAGGTAATATAAAGCTCC ] [+] EMBL CB627334 [ CAGAAGGTGTACCAGACTGTTAATGATGTAACCCAATATGTACACAAGTATTTTCTTTACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGATA ] [+] EMBL CB629128 [ GTAACACAATATGTACACAAGTATTTTCTTTACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGATACTGATGCTGCAGAGTGGAGGTAATATAAAGCTCCCGCAGCTTCTGTGGC ] consensusID : consensus_10008#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 792 fasta sequence [TCCTTTTTTTTTTTAATGATGTAACACAATATGTACACAAGTATTTTCTT-TACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGAT] [+] EMBL CB635545 [TCCTTTTTTTTTTTAATGATGTAACACAATATGTACACAAGTATTTTCTT TACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGAT] [+] EMBL CB634085 [ ACAATATGTACACAAGTATTTTTTTATACAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAACAATTTCCCAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGAT ] [+] EMBL CB628879 [ TATTTTCTT TACAATACGATAGATCGGGAAATGACAAGCTATGTTGAAGGGAGAAAAATACATCATGCAACAATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTTCCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCATAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTTCTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTACTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGGCGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTGCAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAGATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAACTGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACCCAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATGCCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCACGTCACGATGTAAAACAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10008#0 GCAGAACGTGTACCAGACTGTTAATGATGTAACACAATATGTACACAAGTATTTTCTTTA 60 consensus_10008#1 --------TCCTTTTTTTTTTTAATGATGTAACACAATATGTACACAAGTATTTTCTTTA 52 * * **************************************** consensus_10008#0 CAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAAC 120 consensus_10008#1 CAATAAGATAGATCGGGAAATGACAAGCTATGTTGAAGGTAGAAAAATACATCATGCAAC 112 ************************************************************ consensus_10008#0 AATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTT 180 consensus_10008#1 AATTTAACAGCATGACAATCATAGTTTACCGTGGAAGACTTCCGGATAACATAAATTCTT 172 ************************************************************ consensus_10008#0 CCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCA 240 consensus_10008#1 CCTGCAGGCTATAGCAACCTGGAGATGCTAAATTAGCCATACTGTTGATTCCAATCCCCA 232 ************************************************************ consensus_10008#0 TAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTT 300 consensus_10008#1 TAGCTTGATGATAATCTACATGTCCTTCTGATTGTGGAGTCTGCAGCTCATCGCTATCTT 292 ************************************************************ consensus_10008#0 CTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTA 360 consensus_10008#1 CTGGAGAAACTGTGCCTGATCTGAAACCTTTATTTCTTATAGATTGTAATGACATCTCTA 352 ************************************************************ consensus_10008#0 CTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGG 420 consensus_10008#1 CTTGCTTCATAGTTGGCCGTTCTTCACCTCTAAGCCTCAAGCATGCCCGGGCAATTGAGG 412 ************************************************************ consensus_10008#0 CGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTG 480 consensus_10008#1 CGACAATGTTAATTTCATCCTCAGTTGCTTCTTCAAGAACTTCCGGAGCAGCTATCTCTG 472 ************************************************************ consensus_10008#0 CAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAG 540 consensus_10008#1 CAACTGGCCTTCCTTTTAGCTCAGAAAGAAAGTAAATAGATAAATTTTTCTTTGAACCAG 532 ************************************************************ consensus_10008#0 ATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAAC 600 consensus_10008#1 ATTCACTGTCAAAAATAGGTTGCTTCCTGAGAAGCAGCTCTAAAAGAACAACACCAAAAC 592 ************************************************************ consensus_10008#0 TGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACC 660 consensus_10008#1 TGTAGACATCGCTCTTCTCATTTAGATGCCCGGTATGGTAGTACTCAGGATCTAAGTACC 652 ************************************************************ consensus_10008#0 CAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATG 720 consensus_10008#1 CAAATGTGCCTTGGATATTTGTAAAAACATGGGTTTGATCATTAGGAATCAGTCTTGATG 712 ************************************************************ consensus_10008#0 CCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCA 780 consensus_10008#1 CCCCAAAATCTGATACCTTAGCGGTGTAGTTGGCATCCAAAAGTATATTCGAAGATTTCA 772 ************************************************************ consensus_10008#0 CGTCACGATGTAAAACAGATACTGATGCTGCAGAGTGGAGGTAATATAAAGCTCCCGCAG 840 consensus_10008#1 CGTCACGATGTAAAACAGAT---------------------------------------- 792 ******************** consensus_10008#0 CTTCTGTGGCAATTTCTCAGCACTGATCCCAGGACAATGTGAATTCTCTCA 891 consensus_10008#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||