These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10009#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1742 fasta sequence [CGAGTTACAGCTAATAAACCGCGGTCTCCATCCTCGCAGGCGCAGGCGGGAGCAGCAAGCTGGGGGCGCGCGGCGAGGCGGCTGCTACACCCGCCGCCGCCGCGGCCGGCCGCGGCGACCTCGCCCCGATGGTCGGGATGTACCAGCAGCAGCTCGTCGAAGATCCCTTCCCCCTGAGCGGCGGCTACTGCAGTGACCAGCCACGGCACGCGCCCGCCTCCGCCTCCACCTCCACCTCCACATCCTCGTCAGCTGCCGTTGCAGCCTCGCCGCTGGCGCAGGCGCATGGAGCCGGCGAGCCACGGCGGCTGTTCGAGGCGTTCATGGGGGAGATCCTGCTCCCGCTCCGCGGCGAGGGAGGTGCCAACGGCGGCGGCGTCGGCCGCGGTCCCGGCGGGGTTGGGGATCTGGGGGAGTTGCTGCGGTGGACGCGGGAGGTCGCCGCGAATCCCGTGGCGGCGCGGCCTGTTCCGGCGGAGGTCAAGGCGAGGAAGCGGCAGGTGCTGGCCTTACGGCGCGCTCGCTACCTCAGGATGGAGGACGTTGCGAACGCGGACGAGCTACCCAGCTTCTTCAAGAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTAAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCACCAGTACTTCCCAGAGGACCCAGCATGCCCAGAATGTGAAGAGCATTTCATGAAATGGCTGACAGCTACCTGTCCACATTCTTTTTTGCATGTGCACTTGTTTTGTCTATGTGGAGAGTGACCTCAATCGATTTGTCATTTCTCCATGTGGTCATTAGTCTGATCTTGGAAGATATTTGGATAAAGTGAGTCGTTCACTTTGCTAGAACACATCCATTCTGCAGAGAAACTTATTTGAATGGCAGACCATTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCATTGTACAGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACAAATGGTCTGGAACATTTCTTATTATTGAGACTTGGAAGGGCCAATGTGTCGCCTTTAGCAAGCTTTTTTGGCAAAAAAAAAAAAAAAGA] [+] EMBL AK069637 [CGAGTTACAGCTAATAAACCGCGGTCTCCATCCTCGCAGGCGCAGGCGGGAGCAGCAAGCTGGGGGCGCGCGGCGAGGCGGCTGCTACACCCGCCGCCGCCGCGGCCGGCCGCGGCGACCTCGCCCCGATGGTCGGGATGTACCAGCAGCAGCTCGTCGAAGATCCCTTCCCCCTGAGCGGCGGCTACTGCAGTGACCAGCCACGGCACGCGCCCGCCTCCGCCTCCACCTCCACCTCCACATCCTCGTCAGCTGCCGTTGCAGCCTCGCCGCTGGCGCAGGCGCATGGAGCCGGCGAGCCACGGCGGCTGTTCGAGGCGTTCATGGGGGAGATCCTGCTCCCGCTCCGCGGCGAGGGAGGTGCCAACGGCGGCGGCGTCGGCCGCGGTCCCGGCGGGGTTGGGGATCTGGGGGAGTTGCTGCGGTGGACGCGGGAGGTCGCCGCGAATCCCGTGGCGGCGCGGCCTGTTCCGGCGGAGGTCAAGGCGAGGAAGCGGCAGGTGCTGGCCTTACGGCGCGCTCGCTACCTCAGGATGGAGGACGTTGCGAACGCGGACGAGCTACCCAGCTTCTTCAAGAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTAAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCACCAGTACTTCCCAGAGGACCCAGCATGCCCAGAATGTGAAGAGCATTTCATGAAATGGCTGACAGCTACCTGTCCACATTCTTTTTTGCATGTGCACTTGTTTTGTCTATGTGGAGAGTGACCTCAATCGATTTGTCATTTCTCCATGTGGTCATTAGTCTGATCTTGGAAGATATTTGGATAAAGTGAGTCGTTCACTTTGCTAGAACACATCCATTCTGCAGAGAAACTTATTTGAATGGCAGACCATTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCATTGTACAGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACAAATGGTCTGGAACATTTCTTATTATTGAGACTTGGAAGGGCCAATGTGTCGCCTTTAGCAAGCTTTT ] [+] EMBL CB672493 [ CGGCGCGCTCGCTACCTCAGGATGGAGGACGTTGCGAACGCGGACGAGCTACCCAGCTTCTTCAAGAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTAAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCNATCTGAAAGCACCAGTACTTCCCAGAGG ] [-] EMBL CB672494 [ CACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCACCAGTACTTCCCAGAGGACCCAGCATGCCCAGAATGTGAAGAGCATTTCATGAAATGGCTGACAGCTACCTGTCCACATTCTTTTTTGCATGTGCACTTGTTTTGTCTATGTGGAGAGTGACCTCAATCGATTTGTCATTTCTCCATGTGGTCATTAGTCTGATCTTGGAAGATATTTGGATAAAGTGAGTCGTTCACTTTGCTAGAACACATCCATTCTGCAGAGAAACTTATTTGAATGGCAGACCATTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCATTGTACAGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACAAATGGTCTGGAACATTTCTTATTATTGAGACTTGGAAGGGCCAATGTGTCGCCTTTAGCAAGCTTTTTTGGCAAAAAAAAAAAAAAAGA] consensusID : consensus_10009#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1695 fasta sequence [GCAGCAAGCTGGGGGCGCGCGGCGAGGCGGCTGCTACACCCGCCGCCGCCGCGGCCGGCCGCGGCGACCTCGCCCCGATGGTCGGGATGTACCAGCAGCAGCTCGTCGAAGATCCCTTCCCCCTGAGCGGCGGCTACTGCAGTGACCAGCCACGGCACGCGCCCGCCTCCGCCTCCACCTCCACCTCCACATCCTCGTCAGCTGCCGTTGCAGCCTCGCCGCTGGCGCAGGCGCATGGAGCCGGCGAGCCACGGCGGCTGTTCGAGGCGTTCATGGGGGAGATCCTGCTCCCGCTCCGCGGCGAGGGAGGTGCCAACGGCGGCGGCGTCGGCCGCGGTCCCGGCGGGGTTGGGGATCTGGGGGAGTTGCTGCGGTGGACGCGGGAGGTCGCCGCGAATCCCGTGGCGGCGCGGCCTGTTCCGGCGGAGGTCAAGGCGAGGAAGCGGCAGGTGCTGGCCTTACGGCGCGCTCGCTACCTCAGGATGGAGGACGTTGCGAACGCGGACGAGCTACCCAGCTTCTTCAAGAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTGAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCACCAGTACTTCCCAGAGGACCCAGCATGCCCAGAATGTGAAGAGCATTTCATGAAATGGCTGACAGCTACCTGTCCACATTCTTTTTTGCATGTGCACTTGTTTTGTCTATGTGGAGAGTGACCTCAATCGATTTGTCATTTCTCCATGTGGTCATTAGTCTGATCTTGGAAGATATTTGGATAAAGTGAGTCGTTCACTTTGCTAGAACACATCCATTCTGCAGAGAAACTTATTTGAATGGCAGACCATTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCATTGTACAGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACAAATGGTCTGGAACATTTCTTATTATTGAGACTTGGAAGGGCCAATGTGTCGCCTTTAGCAAGCTTTTTTGGCAATGCATATCTATCGTTCTGT] [+] EMBL AK100453 [GCAGCAAGCTGGGGGCGCGCGGCGAGGCGGCTGCTACACCCGCCGCCGCCGCGGCCGGCCGCGGCGACCTCGCCCCGATGGTCGGGATGTACCAGCAGCAGCTCGTCGAAGATCCCTTCCCCCTGAGCGGCGGCTACTGCAGTGACCAGCCACGGCACGCGCCCGCCTCCGCCTCCACCTCCACCTCCACATCCTCGTCAGCTGCCGTTGCAGCCTCGCCGCTGGCGCAGGCGCATGGAGCCGGCGAGCCACGGCGGCTGTTCGAGGCGTTCATGGGGGAGATCCTGCTCCCGCTCCGCGGCGAGGGAGGTGCCAACGGCGGCGGCGTCGGCCGCGGTCCCGGCGGGGTTGGGGATCTGGGGGAGTTGCTGCGGTGGACGCGGGAGGTCGCCGCGAATCCCGTGGCGGCGCGGCCTGTTCCGGCGGAGGTCAAGGCGAGGAAGCGGCAGGTGCTGGCCTTACGGCGCGCTCGCTACCTCAGGATGGAGGACGTTGCGAACGCGGACGAGCTACCCAGCTTCTTCAAGAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTGAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCACCAGTACTTCCCAGAGGACCCAGCATGCCCAGAATGTGAAGAGCATTTCATGAAATGGCTGACAGCTACCTGTCCACATTCTTTTTTGCATGTGCACTTGTTTTGTCTATGTGGAGAGTGACCTCAATCGATTTGTCATTTCTCCATGTGGTCATTAGTCTGATCTTGGAAGATATTTGGATAAAGTGAGTCGTTCACTTTGCTAGAACACATCCATTCTGCAGAGAAACTTATTTGAATGGCAGACCATTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCATTGTACAGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACAAATGGTCTGGAACATTTCTTATTATTGAGACTTGGAAGGGCCAATGTGTCGCCTTTAGCAAGCTTTTTTGGCAATGCATATCTATCGTTCTGT] consensusID : consensus_10009#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 811 fasta sequence [AGTTGGGCAGAGAGGTCCCCCGGTAGCGTTTCGCTGGCTCCCCCCTGCCGCGTCTCTCGCTGGGCCGTGCCGCCCGTATGTTGGGCGCCGCAGCCGCAGCCGTGCCCGACCCGCGAGACCCGGCGACCGTCTCCTCGCATGTCCTCTCCTGTGACCAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTAAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAGTGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTNTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGGAGCATCAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGTGAGAAGAGTATGGAGCCATGCCGATTAATCTTTTGGAGATTGTAGT] [+] EMBL BE040876 [AGTTGGGCAGAGAGGTCCCCCGGTAGCGTTTCGCTGGCTCCCCCCTGCCGCGTCTCTCGCTGGGCCGTGCCGCCCGTATGTTGGGCGCCGCAGCCGCAGCCGTGCCCGACCCGCGAGACCCGGCGACCGTCTCCTCGCATGTCCTCTCCTGTGACCAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTAAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAGTGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTNTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGGAGCATCAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGTGAGAAGAGTATGGAGCCATGCCGATTAATCTTTTGGAGATTGTAGT] consensusID : consensus_10009#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [TGTCTATGTGGAGACACTCGTGACCNCCATCGATTTGTCATTTCTCCCACTGTGGTCACTTAGTCTGATCTTGGAAGATATTTGGATAAAGTGACCGTTCCCTTTGCTAGAACACATCCCTTCTCAGTGAAACTTATTTGAATGCCAACCACTTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCCTTGTACACGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACCAATGGTCTGGAACCTTTCTTATTATTGAGACTTGGAAGGGCCCATGTGTCCCTTTAGCAAGCTTTTTTGCAATGCATATCTATCGTTCTGTTTTTTTTTTCTTTTAACTCCAGTTTTAATAGGATCTCTTCTTGTGTTAATATTTACCTTTTGGCNCGATAAAGCTTATATCTTACCAGAAAAAAAAAA] [+] EMBL BM418946 [TGTCTATGTGGAGACACTCGTGACCNCCATCGATTTGTCATTTCTCCCACTGTGGTCACTTAGTCTGATCTTGGAAGATATTTGGATAAAGTGACCGTTCCCTTTGCTAGAACACATCCCTTCTCAGTGAAACTTATTTGAATGCCAACCACTTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCCTTGTACACGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACCAATGGTCTGGAACCTTTCTTATTATTGAGACTTGGAAGGGCCCATGTGTCCCTTTAGCAAGCTTTTTTGCAATGCATATCTATCGTTCTGTTTTTTTTTTCTTTTAACTCCAGTTTTAATAGGATCTCTTCTTGTGTTAATATTTACCTTTTGGCNCGATAAAGCTTATATCTTACCAGAAAAAAAAAA] consensusID : consensus_10009#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 169 fasta sequence [CTCCTCGCATGTCCTCTCCTGTGACCGCGCAGGGCAGCAGCAAGCTGGGGGCGCGCGCGAGGCGCTGCTACACCCGCCGCCCGCGCCGGCCGCCGACCTCGCCCCGATGGTCGGATGTACCAGCAGCAGCTCGTCGAAGACCCTTCCCCTGAGCGCGCTACTGCAGTGA] [+] EMBL OSU60300 [CTCCTCGCATGTCCTCTCCTGTGACCGCGCAGGGCAGCAGCAAGCTGGGGGCGCGCGCGAGGCGCTGCTACACCCGCCGCCCGCGCCGGCCGCCGACCTCGCCCCGATGGTCGGATGTACCAGCAGCAGCTCGTCGAAGACCCTTCCCCTGAGCGCGCTACTGCAGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10009#0 ------------------------------------------------------------ consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 GCAGCAAGCTGGGGGCGCGCGGCGAGGCGGCTGCTACACCCGCCGCCGCCGCGGCCGGCC 60 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 ------------------------------------------------------------ consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 GCGGCGACCTCGCCCCGATGGTCGGGATGTACCAGCAGCAGCTCGTCGAAGATCCCTTCC 120 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 ------------------------------------------------------------ consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 CCCTGAGCGGCGGCTACTGCAGTGACCAGCCACGGCACGCGCCCGCCTCCGCCTCCACCT 180 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 ------------------------------------------------------------ consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 CCACCTCCACATCCTCGTCAGCTGCCGTTGCAGCCTCGCCGCTGGCGCAGGCGCATGGAG 240 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 ------------------------------------------------------------ consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 CCGGCGAGCCACGGCGGCTGTTCGAGGCGTTCATGGGGGAGATCCTGCTCCCGCTCCGCG 300 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 ------------------------------------------------------------ consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 -----------------------------------------------------------A 1 consensus_10009#1 GCGAGGGAGGTGCCAACGGCGGCGGCGTCGGCCGCGGTCCCGGCGGGGTTGGGGATCTGG 360 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 ------------CGAGTTACAGCTAATAAACCGCG-GTCTCCAT---CCTCGCAGG-CGC 43 consensus_10009#4 ----------------------------CTCCTCGCATGTCCTC---TCCTGTGAC-CGC 28 consensus_10009#2 GTTGGGCAGAGAGGTCCCCCGGTAGCGTTTCGCTGGCTCCCCCC---TGCCGCGTCTCTC 58 consensus_10009#1 GGGAGTTGCTGCGGTGGACGCGGGAGGTCGCCGCGAATCCCGTGG--CGGCGCGGCCTGT 418 consensus_10009#3 ------------TGTCTATGTGGAGACACTCGTGACCNCCATCGATTTGTCATTTCTCCC 48 * consensus_10009#0 AGGCG-----GGAGCAGCAAGCTGGGGGCGCGCGGCGAGGCGGCTGCTACACCCGCCGCC 98 consensus_10009#4 GCAGG-----GCAGCAGCAAGCTGGGGGCGCGCG-CGAGGCG-CTGCTACACCCGCCGC- 80 consensus_10009#2 GCTGG-----GCCGTGCCGCCCGTATGTTGGGCGCCGCAGCCGCAGCCGTGCCCGAC--- 110 consensus_10009#1 TCCGGCGGAGGTCAAGGCGAGGAAGCGGCAGGTGCTGGCCTTACGGC-GCGCTCGCTACC 477 consensus_10009#3 ACTGTGGTCACTTAGTCTGATCTTGGAAGATATTTGGATAAAGTGACCGTTCCCTTTGCT 108 * * * * consensus_10009#0 GCCGCGG--CCGGCCGCGGCGACC-TCGCCCCGATGGTCGGGATGTACCAGCAGCAGCTC 155 consensus_10009#4 -CCGCG---CCGGCCGC--CGACC-TCGCCCCGATGGTCGG-ATGTACCAGCAGCAGCTC 132 consensus_10009#2 -CCGCG-----AGACCCGGCGACCGTCTCCTCGCATGTCCTCTCCTGTGACCAAAAGGAA 164 consensus_10009#1 TCAGGATG-GAGGACGTTGCGAACGCGGACGAGCTACCCAGCTTCT-TCAAGAAAAGGAA 535 consensus_10009#3 AGAACACATCCCTTCTCAGTGAAACTTATTTGAATGCCAACCACTTCTCAATGTCTGTCT 168 * ** * * * consensus_10009#0 GTCGAAGATCCCTTCCCCCTGAGC-GGCGGCTACTGCAGT--GACCAGCCACGGCACGCG 212 consensus_10009#4 GTCGAAGACCCTT--CCCCTGAGC-G--CGCTACTGCAGT--GA---------------- 169 consensus_10009#2 GTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGT--AAAGGTTCGATGAATATG 222 consensus_10009#1 GTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGT--GAAGGTTCGATGAATATG 593 consensus_10009#3 CAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCCTTGTA 228 * * * * * * consensus_10009#0 CCCGCCTCCGCCTCCACCTCCACCTCCACATCCTCGTCAGCTGCCGTTGCAGCCTCGCCG 272 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 CCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAGTGAAACTCATGACATCAGTGCTCCTC 282 consensus_10009#1 CCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGACATCAGTGCTCCTC 653 consensus_10009#3 CACGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACCAATGGTCTGGAACCTTTC 288 consensus_10009#0 CTGGCGCAGGCGCATGGAGCCGGCGAGCCACGGCGGCTGTTCGAGGCGTTCATGGGGGAG 332 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACT 342 consensus_10009#1 ACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACT 713 consensus_10009#3 TTATTATTGAGACTTGGAAGGGCCCATGTGTCCCTTTAGCAAGCTTTTTTGCAATGCATA 348 consensus_10009#0 ATCCTGCTCCCGCTCCGCGGCGAGGGAGGTGCCAACGGCGGCGGCGTCGGC-CGCGGTCC 391 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 GAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCA-AAGATGCT 401 consensus_10009#1 GAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCA-AAGATGCT 772 consensus_10009#3 TCTATCGTTCTGTTTTTTTTTTCTTTTAACTCCAGTTTTAATAGGATCTCTTCTTGTGTT 408 consensus_10009#0 CGGCGGGGTTGGGGATCTGGGGGAGTTGCTGCGGTGGACGCGGGAGGTCGCCGCGAATCC 451 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 AGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGG 461 consensus_10009#1 AGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGG 832 consensus_10009#3 AATATTTACCTTTTGGCNCGATAAAGCTTATATCTTACCAGAAAAAAAAAA--------- 459 consensus_10009#0 CGTGGCGGCGCGGCCTGTTCCGGCGGAGGTCAAGGCGAGGAAGCGGCAGGTGCTGGCCTT 511 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 CCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCA 521 consensus_10009#1 CCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCA 892 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 ACGGCGCGCTCGCTACCTCAGGATGGAGGACGTTGCGAACGCGGACGAGCTACCCAGCTT 571 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 TCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTNTCACAGAATG 581 consensus_10009#1 TCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATG 952 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 CTTCAAGAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTAAAGG 631 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 GCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAA 641 consensus_10009#1 GCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAA 1012 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 TTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGAC 691 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 GTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGGAGC 701 consensus_10009#1 GTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGC 1072 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 ATCAGT-GCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGG 750 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ATCAAA-CATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTT 760 consensus_10009#1 ATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTT 1132 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 TACC-TGACTGGACTGAACCACCT-TCAGATGAAC-TTGCTCGTTACAAAAATGACCCAA 807 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 CTTG-TGAGAAGAGTATGGAGCCA-TGCCGATTAA-TCTTTTGGAGATTGTAGT------ 811 consensus_10009#1 CTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGA 1192 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 ACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTG 867 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 AGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCACCAGTACTTCCCAGAG 1252 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 ATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCT 927 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 GACCCAGCATGCCCAGAATGTGAAGAGCATTTCATGAAATGGCTGACAGCTACCTGTCCA 1312 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 TCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTA 987 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 CATTCTTTTTTGCATGTGCACTTGTTTTGTCTATGTGGAGAGTGACCTCAATCGATTTGT 1372 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 GAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTC 1047 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 CATTTCTCCATGTGGTCATTAGTCTGATCTTGGAAGATATTTGGATAAAGTGAGTCGTTC 1432 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 GTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGA 1107 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 ACTTTGCTAGAACACATCCATTCTGCAGAGAAACTTATTTGAATGGCAGACCATTCTCAA 1492 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 CTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTT 1167 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 TGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTT 1552 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 ATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGG 1227 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 CCCATTGTACAGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACAAATGGTCTGG 1612 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 AGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCA 1287 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 AACATTTCTTATTATTGAGACTTGGAAGGGCCAATGTGTCGCCTTTAGCAAGCTTTTTTG 1672 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 CCAGTACTTCCCAGAGGACCCAGCATGCCCAGAATGTGAAGAGCATTTCATGAAATGGCT 1347 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 GCAATGCATATCTATCGTTCTGT------------------------------------- 1695 consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 GACAGCTACCTGTCCACATTCTTTTTTGCATGTGCACTTGTTTTGTCTATGTGGAGAGTG 1407 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 ------------------------------------------------------------ consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 ACCTCAATCGATTTGTCATTTCTCCATGTGGTCATTAGTCTGATCTTGGAAGATATTTGG 1467 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 ------------------------------------------------------------ consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 ATAAAGTGAGTCGTTCACTTTGCTAGAACACATCCATTCTGCAGAGAAACTTATTTGAAT 1527 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 ------------------------------------------------------------ consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 GGCAGACCATTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTAT 1587 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 ------------------------------------------------------------ consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 CTGATCTGAATTGTTTCCCATTGTACAGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAG 1647 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 ------------------------------------------------------------ consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 AAAACAAATGGTCTGGAACATTTCTTATTATTGAGACTTGGAAGGGCCAATGTGTCGCCT 1707 consensus_10009#4 ------------------------------------------------------------ consensus_10009#2 ------------------------------------------------------------ consensus_10009#1 ------------------------------------------------------------ consensus_10009#3 ------------------------------------------------------------ consensus_10009#0 TTAGCAAGCTTTTTTGGCAAAAAAAAAAAAAAAGA 1742 consensus_10009#4 ----------------------------------- consensus_10009#2 ----------------------------------- consensus_10009#1 ----------------------------------- consensus_10009#3 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||