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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10011#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 843 fasta sequence
[GAGAGGACCAGCCAGCGATTCGCCGCCGTCATCTCCAGCTTCTGCGGGAGCAACACCGCCAGCGCGCTCTCCCCTCCCCGCCACGCCTCGCCCATTGGGATTCGCCGCCCTCACCGCGAGCTCCCACGTCGAGGTCACACCTAGGGTTCCATCGCCGCCGCCGCTGCCGCCAGCGAAGGAAGAGGAGGATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGGCGGCACCGTGCTGGGCAGGGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCAGTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTACCTAGCTGAGGTCGAGTAGCTTGCATTTGAAGCGTTTGAGATCTATCTAATTGATCAACCTGCCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTC-----ACTTGGCAATAAGTACTGTTCGACAAAAAAAAGAACACAAGTTCCACCGATTTCCATCCGCTGTACCTTTTGTGGTTCTCTTAGGTTGGAATATATAATGGATGAATCATGACTGCGTTTCATGATGTAATGGTCTTATGGCCACTTGTAATTGTTTGATCCAGCAGCTATCTGCGCTCATGCTTGCTTCGTCAAAAAA]
[+] EMBL AK073977 [GAGAGGACCAGCCAGCGATTCGCCGCCGTCATCTCCAGCTTCTGCGGGAGCAACACCGCCAGCGCGCTCTCCCCTCCCCGCCACGCCTCGCCCATTGGGATTCGCCGCCCTCACCGCGAGCTCCCACGTCGAGGTCACACCTAGGGTTCCATCGCCGCCGCCGCTGCCGCCAGCGAAGGAAGAGGAGGATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGGCGGCACCGTGCTGGGCAGGGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCAGTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTGCCTAGCTGAGGTCGAGTAGCTTGCATTTGAAGCGTTTGAGATCTATCTAATTGATCAACCTGCCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTCACTTAACTTGGCAATAAGTACTGTTCGACAAAAAAAAGAACACAAGTTCCACCGATTTCCATCCGCTGTACCTTTTGTGGTTCTCTTAGGTTGGAATATATAATGGATGAATCATGACT ]
[+] EMBL CF315011 [GAGAGGACCAGCCAGCGATTCGCCGCCGTCATCTCCAGCTTCTGCGGGAGCAACACCGCCAGCGCGCTCTCCCCTCCCCGCCACGCCTCGCCCATTGGGATTCGCCGCCCTCACCGCGAGCTCCCACGTCGAGGTCACACCTAGGGTTCCATCGCCGCCGCCGCTGCCGCCAGCGAAGGAAGAGGAGGATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGGCGGCACCGTGCTGGGCAGGGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCAGTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGAC ]
[+] EMBL CF295976 [GAGAGGACCAGCCAGCGATTCGCCGCCGTCATCTCCAGCTTCTGCGGGAGCAACACCGCCAGCGCGCTCTCCCCTCCCCGCCACGCCTCGCCCATTGGGATTCGCCGCCCTCACCGCGAGCTCCCACGTCGAGGTCACACCTAGGGTTCCATCGCCGCCGCCGCTGCCGCCAGCGAAGGAAGAGGAGGATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGGCGGCACCGTGCTGGGCAGGGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAA ]
[-] EMBL CF315012 [ CCGCCGCTGCCGCCAGCGAAGGAAGAGGAGGATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGGCGGCACCGTGCTGGGCAGGGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAACAAAACTGGAGCTGCCCAGGAAGCTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCAGTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTACCTAGCTGAGGTCGAGTAGCTTGCATTTGAAGCGTTTGAGATCTATCTAATTGATCAACCTGCCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTC ACTTGGCAATAAGTACTGTTCGACAAAAAA ]
[-] EMBL CF295975 [ TACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCAGTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTACCTAGCTGAGGTCGAGTAGCTTGCAGTTGAAGCGTTTGAGATCTATCTAATTGATCAACCTGCCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTC ACTTGGCAATAAGTACTGTTCGACAAAAAAAAGAACACAAGTTCCACCGATTTCCATCCGCTGTACCTTTTGTGGTTCTCTTAGGTTGGAATATATAATGGATGAATCATGACTGCGTTTCATGATGTAATGGTCTTATGGCCACTTGTAATTGTTTGATCCAGCAGCTATCTGCGCTCATGCTTGCTTCGTCAAAAAA]
consensusID : consensus_10011#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence
[TTCACACCTTAGGTTCCATCGCCGCCGCCGCTNGCCGCCAGCGAAGGTAAGAGGAGTATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGTGCGGCACCGTGCTGGGTAGGTGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAACANATAACTGGAGCTGCCCAGGAAGCTTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCAGTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTACCTAGCTGAGGTCGAGTAGCTTGCATTTGAAGCGTTTGAGATTTATCTAATTGATCAACCTGCCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTCACTTAACTTGGCAATAAGTACTGTTCGACAAAAAAAAAGAACACAAGTTCCACCGATTTCAAAAAAAAAA]
[+] EMBL BI806779 [TTCACACCTTAGGTTCCATCGCCGCCGCCGCTNGCCGCCAGCGAAGGTAAGAGGAGTATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGTGCGGCACCGTGCTGGGTAGGTGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAACANATAACTGGAGCTGCCCAGGAAGCTTATAAATGGTATTCGAAGGGCCAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGATCGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCAGTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTACCTAGCTGAGGTCGAGTAGCTTGCATTTGAAGCGTTTGAGATTTATCTAATTGATCAACCTGCCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTCACTTAACTTGGCAATAAGTACTGTTCGACAAAAAAAAAGAACACAAGTTCCACCGATTTCAAAAAAAAAA]
consensusID : consensus_10011#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence
[GGCCCGGGGAAATTCGATTCTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTTTTTTTCCCGTCGAAAGTTTATCGGGGTAAAGAAAGTTTAGAAGCTGTATATCAAAAACCCGACGTACCTAGCTGAGGTCGAGTAGCTTGCCTTTGAAGCGTTTGAGATCTATTTAATTGATCAACCTGCCAGTGTGGGTGAAGATCGCGATTTTTGTTAATTGGTTGTAACGGGATGTCCCTTGGCAATAAGTTCTGTTTGGCAAAAAAAAGAACCCAAGTTCCCCCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA754245 [GGCCCGGGGAAATTCGATTCTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTTTTTTTCCCGTCGAAAGTTTATCGGGGTAAAGAAAGTTTAGAAGCTGTATATCAAAAACCCGACGTACCTAGCTGAGGTCGAGTAGCTTGCCTTTGAAGCGTTTGAGATCTATTTAATTGATCAACCTGCCAGTGTGGGTGAAGATCGCGATTTTTGTTAATTGGTTGTAACGGGATGTCCCTTGGCAATAAGTTCTGTTTGGCAAAAAAAAGAACCCAAGTTCCCCCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10011#0 GAGAGGACCAGCCAGCGATTCGCCGCCGTCATCTCCAGCTTCTGCGGGAGCAACACCGCC 60
consensus_10011#1 ------------------------------------------------------------
consensus_10011#2 ------------------------------------------------------------
consensus_10011#0 AGCGCGCTCTCCCCTCCCCGCCACGCCTCGCCCATTGGGATTCGCCGCCCTCACCGCGAG 120
consensus_10011#1 ------------------------------------------------------------
consensus_10011#2 ------------------------------------------------------------
consensus_10011#0 CTCCCACGTCGAGGTCACACCTAGGGTTCCATCGCCGCCGCCGCTG-CCGCCAGCGAAGG 179
consensus_10011#1 -------------TTCACACCTTAGGTTCCATCGCCGCCGCCGCTNGCCGCCAGCGAAGG 47
consensus_10011#2 ------------------------------------------------------------
consensus_10011#0 -AAGAGGAGGATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCG-GC 237
consensus_10011#1 TAAGAGGAGTATACAGCGAGATGGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGTGC 107
consensus_10011#2 ------------------------------------------------------------
consensus_10011#0 GGCACCGTGCTGGGCAGG-GCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAA 296
consensus_10011#1 GGCACCGTGCTGGGTAGGTGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCAATGCAAA 167
consensus_10011#2 ------------------------------------------------------------
consensus_10011#0 CAAA--ACTGGAGCTGCCCAGGAAGCT-ATAAATGGTATTCGAAGGGCCAGCAAGGCCAT 353
consensus_10011#1 CANATAACTGGAGCTGCCCAGGAAGCTTATAAATGGTATTCGAAGGGCCAGCAAGGCCAT 227
consensus_10011#2 ------------------------------------------------------------
consensus_10011#0 GACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGAT 413
consensus_10011#1 GACTGAGCAAGAAGCCCGGCAAATACTAGGTATCAGCGAAAAGTCGACTTGGGAAGAGAT 287
consensus_10011#2 ----------------------------------------------------------GG 2
consensus_10011#0 CGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCA 473
consensus_10011#1 CGTCCAGAAATACGATACTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTCTATCTCCA 347
consensus_10011#2 CCCGGGGAAATTCGATTCTATGTTTGAGAGGAATGCTAAGAATGGGAGCTTTTTTTTCCC 62
* ***** **** ********************************** * * ***
consensus_10011#0 GTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTACC 533
consensus_10011#1 GTCGAAAGTTCATCGGGCTAAAGAATGTCTAGAAGCTGTATATCAAAAGCCCGACGTACC 407
consensus_10011#2 GTCGAAAGTTTATCGGGGTAAAGAAAGTTTAGAAGCTGTATATCAAAAACCCGACGTACC 122
********** ****** ******* ** ******************* ***********
consensus_10011#0 TAGCTGAGGTCGAGTAGCTTGCATTTGAAGCGTTTGAGATCTATCTAATTGATCAACCTG 593
consensus_10011#1 TAGCTGAGGTCGAGTAGCTTGCATTTGAAGCGTTTGAGATTTATCTAATTGATCAACCTG 467
consensus_10011#2 TAGCTGAGGTCGAGTAGCTTGCCTTTGAAGCGTTTGAGATCTATTTAATTGATCAACCTG 182
********************** ***************** *** ***************
consensus_10011#0 CCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTCACTT----- 648
consensus_10011#1 CCAGTGTGGCTGAAGATCGCGATTATTGTTAATTGGTTGTAACGGGATGTCACTTAACTT 527
consensus_10011#2 CCAGTGTGGGTGAAGATCGCGATTTTTGTTAATTGGTTGTAACGGGATGTCCCTT----- 237
********* ************** ************************** ***
consensus_10011#0 GGCAATAAGTACTGTTCGACAAAAAAAA-GAACACAAGTTCCACCGATTTCCATCCGCTG 707
consensus_10011#1 GGCAATAAGTACTGTTCGACAAAAAAAAAGAACACAAGTTCCACCGATTTCAAAAAAAAA 587
consensus_10011#2 GGCAATAAGTTCTGTTTGGCAAAAAAAA-GAACCCAAGTTCCCCCGGAAAAAAAAAAAAA 296
********** ***** * ********* **** ******** *** *
consensus_10011#0 TACCTTTTGTGGTTCTCTTAGGTTGGAATATATAATGGATGAATCATGACTGCGTTTCAT 767
consensus_10011#1 A----------------------------------------------------------- 588
consensus_10011#2 AAAAAAAAAAAAAAAAAAAA---------------------------------------- 316
consensus_10011#0 GATGTAATGGTCTTATGGCCACTTGTAATTGTTTGATCCAGCAGCTATCTGCGCTCATGC 827
consensus_10011#1 ------------------------------------------------------------
consensus_10011#2 ------------------------------------------------------------
consensus_10011#0 TTGCTTCGTCAAAAAA 843
consensus_10011#1 ----------------
consensus_10011#2 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||