These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1531 fasta sequence [GTGAAATTGTGGCGTTATTATATTATAGCGAAGTCCTATTTCTTCATTGGAAAGCTTGAAGAGGCTCATCAGTTTTTAAAGAAGCTCGGACAGGAAGCACTTGTTGAATGCAGGTACGGGAAGCAATCTCAGCAATCAGTTTCATCATTCTCCACGACAATCTGTGAACTACTTCGCCTTAAAGCTGCTGGGAACAAAGCATTTCAAGCTGGTAAATATTCAGAGGCTGTGGAGCATTACACTGCTGCTTTGTTAAGCAATACCGAGTCACCGCGTTTTTCAGCAATCTGCTTTGCTAACCGCGCA-CTG-CTTACCAAGCAATGGGCCAAATTTTAGATGCAATAGCAGATTGCTCACTAGCCATAGCCCTTGACTCCAATTATTCTAAGGCTATTTCTAGAAGAGCTGGTTTGTATGAACTTATAAGGGACTATGATCAGGCAGGGAATGATCTTCGTAGGTTAATTTCTCTTCTTGAGAGACAGCTTCAAGAAAATATATACACGCCTTCAGAAAAATCAGATGG-TATTCGCAGCAGTCT-GAACCGATCCAATCTTAGGCTTTCTGCTTT-GGAGCGGGATGCCAAGAAGGGGATCTCACTGAATGTATATTTGATACTAGGAATCGAACCATCTTGCACTTTCTTGGATATAAAGAAGGCATACCGCAAAGCAGCACTAAGGCATCATCCAGACAAAGCTGGTAATTTTCTTGTGAGAAGTGAAAATATCAACGATGCAGTGTGGAGAGATATTGCTAATGACATCCGCAAAGATGCTGACTATCTATTCAAACTAATTGGGAAAGCATATGCTATACTTTCGGACCCTACAACTAATTGAAAAGCAAATGATAGATGCACAATCTTTATTTTTCTGCGGGGATGTATACAGAATCTTTGATGTAGTAGTGCAAACAGCGCACATGAATATTACAGAAGTGGTCAGAGCAATCGAAACAATGACAGGAGCTTACAATGTTTGGAAAAATCATGAGGTGGTACACTGAAGAAACAGAAATGCATAATGGATCAGTCCTACCC-TTTTTTTCCCCTTTGAAGACTAGGTCCGACGCTAAAAGTTGGCTTCTGTTACGCAGGATTCAGGATGCCTAAAAAGAAGCCTAGCCACTGATGTCAGAGTTTGCCGAATGCCAGGTTTGCGTCTCTTGGTGTG-CAGAGTTTTTTGTTGTATG-CCAGTGTTACTTCTCTTTCTCACAGCC-AAAAAAAAAAAGGTGTGCATAGATCCAATGGTATGTATAGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATTTACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTAACACGGTGATTTTGTAAGCAGGATTTTTTTTTTCTTTTTACCCTTTGAAGCTGCCCTCAGTACAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCTGCATGAATGAATTGTGTGTTATTCTTGTTGCTAAAAAAAAAA] [+] EMBL AK069401 [GTGAAATTGTGGCGTTATTATATTATAGCGAAGTCCTATTTCTTCATTGGAAAGCTTGAAGAGGCTCATCAGTTTTTAAAGAAGCTCGGACAGGAAGCACTTGTTGAATGCAGGTACGGGAAGCAATCTCAGCAATCAGTTTCATCATTCTCCACGACAATCTGTGAACTACTTCGCCTTAAAGCTGCTGGGAACAAAGCATTTCAAGCTGGTAAATATTCAGAGGCTGTGGAGCATTACACTGCTGCTTTGTTAAGCAATACCGAGTCACCGCGTTTTTCAGCAATCTGCTTTGCTAACCGCGCAGCTG CTTACCAAGCAATGGGCCAAATTTTAGATGCAATAGCAGATTGCTCACTAGCCATAGCCCTTGACTCCAATTATTCTAAGGCTATTTCTAGAAGAGCTGGTTTGTATGAACTTATAAGGGACTATGATCAGGCAGGGAATGATCTTCGTAGGTTAATTTCTCTTCTTGAGAGACAGCTTCAAGAAAATATATACACGCCTTCAGAAAAATCAGATGG TATTCGCAGCAGTCT GAACCGATCCAATCTTAGGCTTTCTGCTTT GGAGCGGGATGCCAAGAAGGGGATCTCACTGAATGTATATTTGATACTAGGAATCGAACCATCTTGCACTTTCTTGGATATAAAGAAGGCATACCGCAAAGCAGCACTAAGGCATCATCCAGACAAAGCTGGTAATTTTCTTGTGAGAAGTGAAAATATCAACGATGCAGTGTGGAGAGATATTGCTAATGACATCCGCAAAGATGCTGACTATCTATTCAAACTAATTGGGAAAGCATATGCTATACTTTCGGACCCTACAACTAATTGAAAAGCAAATGATAGATGCACAATCTTTATTTTTCTGCGGGGATGTATACAGAATCTTTGATGTAGTAGTGCAAACAGCGCACATGAATATTACAGAAGTGGTCAGAGCAATCGAAACAATGACAGGAGCTTACAATGTTTGGAAAAATCATGAGGTGGTACACTGAAGAAACAGAAATGCATAATGGATCAGTCCTACCC TTTTTTTCCCCTTTGAAGACTAGGTCCGACGCTAAAAGTTGGCTTCTGTTACGCAGGATTCAGGATGCCTAAAAAGAAGCCTAGCCACTGATGTCAGAGTTTGCCGAATGCCAGGTTTGCGTCTCTTGGTGTG CAGAGTTTTTTGTTGTATG CCAGTGTTACTTCTCTTTCTCACAGCC AAAAAAAAAAAGGTGTGCATAGATCCAATGGTATGTATAGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATTTACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTAACACGGTGATTTTGTAAGCAGGATTTTTTTTTTCTTTTTACCCTTTGAAGCTGCCCTCAGTACAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCTGCATGAATGAATTGTGTGTTAT ] [+] EMBL AU056937 [ GCATTACACTGCTGCTTTGTTAAGCAATACCGAGTCACCGCGTTTTTCAGCAATCTGCTTTGCTAACCGCGCA NTGACTTACCAAGCAATGGGCCAAATTTTAGATGCAATAGCAGATTGCTCACTAGCCATAGCCCTTGACTCCAATTATTCTAAGGCTATTTCTAGAAGAGCTGGTTTGTATGAACTTATAAGGGACTATGATCAGGCAGGGAATGATCTTCGTAGGTTAATTTCTCTTCTTGAGAGACAGCTTCAAGAAAATATATACACGCCTTCAGAAAAATCAGATGGTTATTCGCAGCAGTCTGGAACCGATCCAATCTTAGGCTTTCTGCTTTGGGAGCGGGATGCCAAGAAGGG ] [+] EMBL AU057052 [ GCATTACACTGCTGCTTTGTTAAGCAATACCGAGTCACCGCGTTTTTCAGCAATCTGCTTTGCTAACCGCGCA CTGTCTTACCAAGCAATGGGCCAAATTTNAGATGCAATAGCAGATTGCTCACTAGCCATAGCCCTTGACTCCAATTATTCTAAGGCTATTTCTAGAAGAGCTGGTTTGTATGAACTTATAAGGGACTATGATCAGGCAGGGAATGATCTTCGTAGGTTAATTTCTCTTCTTGAGAGA ] [-] EMBL CB630696 [ ATGATCAGGCAGGGAATGATCTTCGTAGGTTAATTTCTCTTCTTGAGAGACAGCTTCAAGAAAATATATACATGCCTTCAGAAAAATCAGATGG TATTCGCAGCAGTCT GAACCGATCCAATCTTAGGCTTTCTGCTTT GGAGCGGGATGCCAAGAAGGGGATCTCACTGAATGTATATTTGATACTAGGAATCGAACCATCTTGCACTTTCTTGGATATAAAGAAGGCATACCGCAAAGCAGCACTAAGGCATCATCCAGACAAAGCTGGTAATTTTCTTGTGAGAAGTGAAAATATCAACGATGCAGTATGGAGAGATATTGCTAATGACATCCGCAAAGATGCTGACTATCTATTCAAACTAATTGGGAAAGCATATGCTATACTTTCGGACCGTACAACTAATTGAAAAGCAAATGATAGATGCACAATCTTTATTTTTCTGCGGGGATGTATACAGAATCTTTGATGTAGTAGTGCAAACAGCGCACATGAATATTACAGAAGTGGTCAGAGCAATCGAAACAATGACAGGAGCTTACAATGTTTGGAAAAATCATGAGGTGGTACACTGAAGAAACAGAAATGCATAATGGATCAGTCCTACCCTTTTTTTTCCCCTTTGAAGACTAGGTCCGACGCTAAAAGTTGGCTTCTGTTACGCAGGATTCAGGATGCCTAAAAAGAAGCCTAGCCACTGATGTCAGAGTTTGCCGAATGCCAGGTTTGCGTCTCTTGGTGTG CAGAGGTTTTTGTTGTATG CCAGTGTTACTTCTCTTTCT ] [+] EMBL AU057053 [ CAGGTTTGCGTCTCTTGGTGTGCCAGAGTTTTTTGTTGTATGCCCAGTGTTACTTCTCTTTCTCACAGCCAAAAAAAAAAAAGGTGTGCATAGATCCAATGGTATGTATAGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATTTACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTAACACGGTGATTTTGTAAGCAGGATTTTTTTTTTCTTTTTACCCTTTGAAGCTGCCCTCAGTACAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCTGCATGAATGAATTGTGTGTTATTCTTGTTGCTAAAAAAAAAA] [+] EMBL AU056938 [ AATGGTATGTATAGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATTTACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTAACACGGTGATTTTGTAAGCAGGATTTTTTTTTTCTTTTTACCCTTTGAAGCTGCCCTCAGTACAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCTGCATGAATGAATTGTGTGTTATTCTTGTTGCTAAAAAAAAAA] consensusID : consensus_10027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [CTTCTCTGTCTCACAGCCAAAAAAAAAAAAGGTGTGCATAGATCCAATGGTATGTATAGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATTTACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTGACACGGTGATTTTGTAACACACAGAGGGCAGGATTTTTTTTTCTTTTTACCCTTTGAAGCTGCCCTCAGTACAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCTGCATGAATGAATTGTGTGTTATTCTTGTTGCTNAAAAAAAAAAAAAAA] [+] EMBL CA757672 [CTTCTCTGTCTCACAGCCAAAAAAAAAAAAGGTGTGCATAGATCCAATGGTATGTATAGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATTTACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTGACACGGTGATTTTGTAACACACAGAGGGCAGGATTTTTTTTTCTTTTTACCCTTTGAAGCTGCCCTCAGTACAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCTGCATGAATGAATTGTGTGTTATTCTTGTTGCTNAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10027#0 GTGAAATTGTGGCGTTATTATATTATAGCGAAGTCCTATTTCTTCATTGGAAAGCTTGAA 60 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 GAGGCTCATCAGTTTTTAAAGAAGCTCGGACAGGAAGCACTTGTTGAATGCAGGTACGGG 120 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 AAGCAATCTCAGCAATCAGTTTCATCATTCTCCACGACAATCTGTGAACTACTTCGCCTT 180 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 AAAGCTGCTGGGAACAAAGCATTTCAAGCTGGTAAATATTCAGAGGCTGTGGAGCATTAC 240 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 ACTGCTGCTTTGTTAAGCAATACCGAGTCACCGCGTTTTTCAGCAATCTGCTTTGCTAAC 300 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 CGCGCACTGCTTACCAAGCAATGGGCCAAATTTTAGATGCAATAGCAGATTGCTCACTAG 360 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 CCATAGCCCTTGACTCCAATTATTCTAAGGCTATTTCTAGAAGAGCTGGTTTGTATGAAC 420 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 TTATAAGGGACTATGATCAGGCAGGGAATGATCTTCGTAGGTTAATTTCTCTTCTTGAGA 480 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 GACAGCTTCAAGAAAATATATACACGCCTTCAGAAAAATCAGATGGTATTCGCAGCAGTC 540 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 TGAACCGATCCAATCTTAGGCTTTCTGCTTTGGAGCGGGATGCCAAGAAGGGGATCTCAC 600 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 TGAATGTATATTTGATACTAGGAATCGAACCATCTTGCACTTTCTTGGATATAAAGAAGG 660 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 CATACCGCAAAGCAGCACTAAGGCATCATCCAGACAAAGCTGGTAATTTTCTTGTGAGAA 720 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 GTGAAAATATCAACGATGCAGTGTGGAGAGATATTGCTAATGACATCCGCAAAGATGCTG 780 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 ACTATCTATTCAAACTAATTGGGAAAGCATATGCTATACTTTCGGACCCTACAACTAATT 840 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 GAAAAGCAAATGATAGATGCACAATCTTTATTTTTCTGCGGGGATGTATACAGAATCTTT 900 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 GATGTAGTAGTGCAAACAGCGCACATGAATATTACAGAAGTGGTCAGAGCAATCGAAACA 960 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 ATGACAGGAGCTTACAATGTTTGGAAAAATCATGAGGTGGTACACTGAAGAAACAGAAAT 1020 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 GCATAATGGATCAGTCCTACCCTTTTTTTCCCCTTTGAAGACTAGGTCCGACGCTAAAAG 1080 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 TTGGCTTCTGTTACGCAGGATTCAGGATGCCTAAAAAGAAGCCTAGCCACTGATGTCAGA 1140 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 GTTTGCCGAATGCCAGGTTTGCGTCTCTTGGTGTGCAGAGTTTTTTGTTGTATGCCAGTG 1200 consensus_10027#1 ------------------------------------------------------------ consensus_10027#0 TTACTTCTCTTTCTCACAGCCAAAAAAAAAAA-GGTGTGCATAGATCCAATGGTATGTAT 1259 consensus_10027#1 ---CTTCTCTGTCTCACAGCCAAAAAAAAAAAAGGTGTGCATAGATCCAATGGTATGTAT 57 ******* ********************* *************************** consensus_10027#0 AGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATT 1319 consensus_10027#1 AGTTCTTGAAGCAGTTGTAAATGGAATCAGAAACACTGTAAATACGGGTACACACCCATT 117 ************************************************************ consensus_10027#0 TACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTAACACGGTGATTT 1379 consensus_10027#1 TACATGAGCGTGGCAGAGGTATATGATTTGTTTGATGTGTTGATTGTGACACGGTGATTT 177 *********************************************** ************ consensus_10027#0 TGTAA----------GCAGGATTTTTTTTTTCTTTTTACCCTTTGAAGCTGCCCTCAGTA 1429 consensus_10027#1 TGTAACACACAGAGGGCAGGATTTTTTTTT-CTTTTTACCCTTTGAAGCTGCCCTCAGTA 236 ***** *************** ***************************** consensus_10027#0 CAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCT 1489 consensus_10027#1 CAGTTTTGTGTGAAACTGAACCAGTGAGTGATTCTTTTGTTGTAACAAACGATTAAAGCT 296 ************************************************************ consensus_10027#0 GCATGAATGAATTGTGTGTTATTCTTGTTGCTAAAAAAAAAA------ 1531 consensus_10027#1 GCATGAATGAATTGTGTGTTATTCTTGTTGCTNAAAAAAAAAAAAAAA 344 ******************************** ********* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||