These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 590 fasta sequence [CGGCGGTGAACGAGCGCGGTGTGCCGGCCGGACGAGTTCTGGGGGGAGACCCGTGCGCGTTCGTCA-CCTCA-AGCA-GGCGGCGGCGCGGTGACGCGGCGGACGT-GTCGCGTGGAGCCGGGAGCGCATGCCGCGGTACATGGTCCCA-AAGACGGTGATCTTCCGCGACGAGTTACCGAAGACGTCCA-CCGGAAAGATCCAGAAGTACGTGCTCCGGAATATCGC-CA-AGGAGATGGGG-CCCAC-CACGGGCACCAACACCA-ACCGCAAC-AGTA-AAAT-GTAGCGGCATCTAGCCAGCAGATGTGTCACTTGCTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTTCTTCACTCGGACAGAGTCACA-GAGCAGAAATGCCTGGTGCAGGCAGAGGCTGATGCATTCCGCATTGTCATGGCATGGTATGTTGGCCTG-TTTTTTTTTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGTGTGTAAATTA--AGA--AAAAAATCTTTTAAACCCAATTGTTCCATGATTTAAAAAAAAAA] [+] EMBL BM421339 [CGGCGGTGAACGAGCGCGGTGTGCCGGCCGGACGAGTTCTGGGGGGAGACCCGTGCGCGTTCGTCA CCTCA AGCA GGCGGCGGCGCGGTGACGCGGCGGACGTGGTCGCGTGGAGCCGGGAGCGCATGCCGCGGTACATGGTCCCA AAGACGGTGATCTTCCGCGACGAGTTACCGAAGACGTCCA CCGGAAAGATCCAGAAGTACGTGCTCCGGAATATCGC CA AGGAGATGGGG CCCAC CACGGGCACCAACACCA ACCGCAAC AGTA AAAT GTAGCGGCATCTAGCCAGCAGATGTGTCACTTGCTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTTCTTCACTCGGACAGAGTCCCA GACCAGAAATGCCTGGT CAGGCAGA GCTGAT CATTCCGCATTGTCATGGCATGGTAT TTGCCCTGTTTTTTTTTTTTTTTTGGGGGGGT TTTAGATCCNCCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGNCGGAAAAAACTTAATACATAGTTTGTGTGTAAA A AAA AAA ] [+] EMBL BI812356 [ GCGC TTCGTCAGCCTCACAGCAGGGCGGCGGCGC GTGACGC GC GACGT GTCGCGTGGA CCGGGAGCGCAT CCGCGGTACATGGTCCCC AAGACGGTGATCTTCCGCGACGAGTTACCGAAGACGTCCA CCGGAAAGATCCAGAAGTACGTGCTCCGGAATATCGC CACAGGAGATGGGGCCCCAC CACGGGCACCAACACCA ACCGCAAC AGTA AAAT GTAGCGGCATCTAGCCCGCAGATGTGTCACTTGCTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTTCTTCACTCGGACAGAGTCACACGAGCAGAAATGCCTGGTGCAGGCAGAGGCTGATGCATTCCGCATTGTCATGGCCTGGTATGTTGGCCTG TTTTTTTTTTTTTTGGGGGGGGTGTTTAGATGC CCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGTGTGTAAATTACGAGACGAAAAAAaaaa ] [+] EMBL BI813129 [ GCGGTGACGGCGCGGACGT GTCGCGTGGAGCCGGGAGCGCATGCCGCGGTACATGGTCCCACAAGACGGTGATCTTCCGCGACGAGTTACCGAAGACGTCCA CCGGAAAGATCCAGAAGTACGTGCTCCGGAATATC C CACAGGAGATGGGG CCCAC CACGGGCACCAACACCA ACCGCAACAAGTT AAAT GTAGCGGCATCTAGCCAGCAGATGTGTCACTTGCTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTTCTTCACTCGGACAGAGTCACA GAGCAGAAATGCCTGGTGCAGGCAGAGGCTGATGCATTCCGCATTGTCATGGCATGGTATGTTGGCCTG TTTTTTTTTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGTGTGTAAATTA AAA AAAAAA ] [+] EMBL BI812716 [ tTGGATCCGGGAGC CATGCCACGGTACATGGTCCCA AAGACGTTGATCTTCCGCGACGAGTTACCGAAGACGTCCATCCGGAAAGATCCCGAAGTACGTGCTCCGGAATATCGCACA AGGAGATGGGG CCCACACACGGGCACC ACACCAGACCGCAAC AGTA AAATGGTA CGGCATCTAGCCAGCAGATGTGTCACTTGCTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTTCTTCACTCGGACAGAGTCACA GAGCAGAAATGCCTGGTGCAGGCAGAGGCTGATGCATTCCGCATTGTCATGGCATGGTATGTTGGCCTG TTTTTTTTTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGTGTGTAAATTA CGA GACGAATCTTTTAAACCCAATTGTTCCATGATTTAAAAAAA ] [+] EMBL BI812002 [ CGCGACGAGTTACCGAAGACGTCCA CCGGAAAGATCCAGAAGTACGTGCTCCGGAATATCGC CACAGGAGATGGGG CCCAC CACGGGCACCAACACCA ACCGCAAC AGTAGAAAT GTAGCGGCATCTAGCCAGCAGATGTGTCACTTGCTTTTTAGCGTCGTCGTCGTCGTC TCGTCTTCTTCACTCGGACAGAGTCACA GAGCAGAAATGCCTGGTGCAGGCAGAGGCTGATGCATTCCGCATTGTCATGGCATGGTATGTTGGCCTGTTTTTTTTTTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGTGTGTAAATTA CGA GACGAATCTTTTAAACCCAATTGTTCCATGATTTAAAAAAAAAA] [-] EMBL BI118726 [ GAATATCGC CA AGGAGATGGGG CCCAC CACGGGCACCAACACCA ACCGCAAC AGTA AAAT GTAGCGGCATCTAGCCAGCAGATGTGTCACTTGCTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTTCTTCACTCGGACAGAGTCACA GAGCAGAAATGCCTGGTGCAGGCAGAGGCTGATGCATTCCGCATTGTCATGGCATGGTATGTTGGCCTG TTTTTTTTTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTTTTTA ] consensusID : consensus_10030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence [CACCCACCACCCACCCGCACAGTAAATGTACGGCATCTACCCACCCAGATGTGGTCACTTGCTTTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTGTCTTCACTCGGACAGAGTCACAGACACAGAAATGCCTGGTGCACGCCAGAGGCTGATGCACTTCCGCACTTGTCACTGGCACTGGTATGTTGGCCTGTTTGTGTTTTGTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGTGTGTAAATTACGAGACGAATCTTTTAAACCCAATTGTTCCATGATTTAAAAAAAAAA] [+] EMBL BI811969 [CACCCACCACCCACCCGCACAGTAAATGTACGGCATCTACCCACCCAGATGTGGTCACTTGCTTTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTGTCTTCACTCGGACAGAGTCACAGACACAGAAATGCCTGGTGCACGCCAGAGGCTGATGCACTTCCGCACTTGTCACTGGCACTGGTATGTTGGCCTGTTTGTGTTTTGTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGTGTGTAAATTACGAGACGAATCTTTTAAACCCAATTGTTCCATGATTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10030#0 CGGCGGTGAACGAGCGCGGTGTGCCGGCCGGACGAGTTCTGGGGGGAGACCCGTGCGCGT 60 consensus_10030#1 ------------------------------------------------------------ consensus_10030#0 TCGTCACCTCAAGCAGGCGGCGGCGCGGTGACGCGGCGGACGTGTCGCGTGGAGCCGGGA 120 consensus_10030#1 ------------------------------------------------------------ consensus_10030#0 GCGCATGCCGCGGTACATGGTCCCAAAGACGGTGATCTTCCGCGACGAGTTACCGAAGAC 180 consensus_10030#1 ------------------------------------------------------------ consensus_10030#0 GTCCACCGGAAAGATCCAGAAGTACGTGCTCCGGAATATCGCCAAGGAGATGGGGCCCAC 240 consensus_10030#1 ------------------------------------------------------------ consensus_10030#0 CACGGGCACCAAC-ACCAACCGCAACAGTAAAATGTAGCGGCATCTAGCCAGC-AGATGT 298 consensus_10030#1 ------CACCCACCACCCACCCGCACAGTAAA-TGTA-CGGCATCTACCCACCCAGATGT 52 **** ** *** *** ******** **** ********* *** * ****** consensus_10030#0 G-TCACTTGCTTTTT--AGCGTCGTCGTCGTCGTCGTCGTCT-TCTTCACTCGGACAGAG 354 consensus_10030#1 GGTCACTTGCTTTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTGTCTTCACTCGGACAGAG 112 * ************* ************************* ***************** consensus_10030#0 TCACAGA-GCAGAAATGCCTGGTGCAGGC-AGAGGCTGATGCA-TTCCGCA-TTGTCA-T 409 consensus_10030#1 TCACAGACACAGAAATGCCTGGTGCACGCCAGAGGCTGATGCACTTCCGCACTTGTCACT 172 ******* ***************** ** ************* ******* ****** * consensus_10030#0 GGCA-TGGTATGTTGGCCTGTTT---TTTTTTTTTTTGGGGGGGGTGTTTAGATGCACCG 465 consensus_10030#1 GGCACTGGTATGTTGGCCTGTTTGTGTTTTGTTTTTTGGGGGGGGTGTTTAGATGCACCG 232 **** ****************** **** ***************************** consensus_10030#0 ATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACA 525 consensus_10030#1 ATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACA 292 ************************************************************ consensus_10030#0 TAGTTTGTGTGTAAATTAAGAAAAAAATCTTTTAAACCCAATTGTTCCATGATTTAAAAA 585 consensus_10030#1 TAGTTTGTGTGTAAATTACGAGACGAATCTTTTAAACCCAATTGTTCCATGATTTAAAAA 352 ****************** ** * *********************************** consensus_10030#0 AAAAA 590 consensus_10030#1 AAAAA 357 ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||