cluster # 10030

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Oryza sativa
cluster # 10030 cluster # 10030 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10030#0 length = 590 sequences # 6

consensus_10030#1 length = 357 sequences # 1

consensusID : consensus_10030#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 590
fasta sequence

                              [CGGCGGTGAACGAGCGCGGTGTGCCGGCCGGACGAGTTCTGGGGGGAGACCCGTGCGCGTTCGTCA-CCTCA-AGCA-GGCGGCGGCGCGGTGACGCGGCGGACGT-GTCGCGTGGAGCCGGGAGCGCATGCCGCGGTACATGGTCCCA-AAGACGGTGATCTTCCGCGACGAGTTACCGAAGACGTCCA-CCGGAAAGATCCAGAAGTACGTGCTCCGGAATATCGC-CA-AGGAGATGGGG-CCCAC-CACGGGCACCAACACCA-ACCGCAAC-AGTA-AAAT-GTAGCGGCATCTAGCCAGCAGATGTGTCACTTGCTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTTCTTCACTCGGACAGAGTCACA-GAGCAGAAATGCCTGGTGCAGGCAGAGGCTGATGCATTCCGCATTGTCATGGCATGGTATGTTGGCCTG-TTTTTTTTTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGTGTGTAAATTA--AGA--AAAAAATCTTTTAAACCCAATTGTTCCATGATTTAAAAAAAAAA]

[+] EMBL BM421339             [CGGCGGTGAACGAGCGCGGTGTGCCGGCCGGACGAGTTCTGGGGGGAGACCCGTGCGCGTTCGTCA CCTCA AGCA GGCGGCGGCGCGGTGACGCGGCGGACGTGGTCGCGTGGAGCCGGGAGCGCATGCCGCGGTACATGGTCCCA AAGACGGTGATCTTCCGCGACGAGTTACCGAAGACGTCCA CCGGAAAGATCCAGAAGTACGTGCTCCGGAATATCGC CA AGGAGATGGGG CCCAC CACGGGCACCAACACCA ACCGCAAC AGTA AAAT GTAGCGGCATCTAGCCAGCAGATGTGTCACTTGCTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTTCTTCACTCGGACAGAGTCCCA GACCAGAAATGCCTGGT CAGGCAGA GCTGAT CATTCCGCATTGTCATGGCATGGTAT TTGCCCTGTTTTTTTTTTTTTTTTGGGGGGGT TTTAGATCCNCCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGNCGGAAAAAACTTAATACATAGTTTGTGTGTAAA  A  AAA  AAA                                         ]
[+] EMBL BI812356             [                                                      GCGC TTCGTCAGCCTCACAGCAGGGCGGCGGCGC GTGACGC GC GACGT GTCGCGTGGA CCGGGAGCGCAT CCGCGGTACATGGTCCCC AAGACGGTGATCTTCCGCGACGAGTTACCGAAGACGTCCA CCGGAAAGATCCAGAAGTACGTGCTCCGGAATATCGC CACAGGAGATGGGGCCCCAC CACGGGCACCAACACCA ACCGCAAC AGTA AAAT GTAGCGGCATCTAGCCCGCAGATGTGTCACTTGCTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTTCTTCACTCGGACAGAGTCACACGAGCAGAAATGCCTGGTGCAGGCAGAGGCTGATGCATTCCGCATTGTCATGGCCTGGTATGTTGGCCTG TTTTTTTTTTTTTTGGGGGGGGTGTTTAGATGC CCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGTGTGTAAATTACGAGACGAAAAAAaaaa                                  ]
[+] EMBL BI813129             [                                                                                       GCGGTGACGGCGCGGACGT GTCGCGTGGAGCCGGGAGCGCATGCCGCGGTACATGGTCCCACAAGACGGTGATCTTCCGCGACGAGTTACCGAAGACGTCCA CCGGAAAGATCCAGAAGTACGTGCTCCGGAATATC C CACAGGAGATGGGG CCCAC CACGGGCACCAACACCA ACCGCAACAAGTT AAAT GTAGCGGCATCTAGCCAGCAGATGTGTCACTTGCTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTTCTTCACTCGGACAGAGTCACA GAGCAGAAATGCCTGGTGCAGGCAGAGGCTGATGCATTCCGCATTGTCATGGCATGGTATGTTGGCCTG TTTTTTTTTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGTGTGTAAATTA  AAA  AAAAAA                                      ]
[+] EMBL BI812716             [                                                                                                                tTGGATCCGGGAGC CATGCCACGGTACATGGTCCCA AAGACGTTGATCTTCCGCGACGAGTTACCGAAGACGTCCATCCGGAAAGATCCCGAAGTACGTGCTCCGGAATATCGCACA AGGAGATGGGG CCCACACACGGGCACC ACACCAGACCGCAAC AGTA AAATGGTA CGGCATCTAGCCAGCAGATGTGTCACTTGCTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTTCTTCACTCGGACAGAGTCACA GAGCAGAAATGCCTGGTGCAGGCAGAGGCTGATGCATTCCGCATTGTCATGGCATGGTATGTTGGCCTG TTTTTTTTTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGTGTGTAAATTA  CGA  GACGAATCTTTTAAACCCAATTGTTCCATGATTTAAAAAAA   ]
[+] EMBL BI812002             [                                                                                                                                                                     CGCGACGAGTTACCGAAGACGTCCA CCGGAAAGATCCAGAAGTACGTGCTCCGGAATATCGC CACAGGAGATGGGG CCCAC CACGGGCACCAACACCA ACCGCAAC AGTAGAAAT GTAGCGGCATCTAGCCAGCAGATGTGTCACTTGCTTTTTAGCGTCGTCGTCGTCGTC TCGTCTTCTTCACTCGGACAGAGTCACA GAGCAGAAATGCCTGGTGCAGGCAGAGGCTGATGCATTCCGCATTGTCATGGCATGGTATGTTGGCCTGTTTTTTTTTTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGTGTGTAAATTA  CGA  GACGAATCTTTTAAACCCAATTGTTCCATGATTTAAAAAAAAAA]
[-] EMBL BI118726             [                                                                                                                                                                                                                           GAATATCGC CA AGGAGATGGGG CCCAC CACGGGCACCAACACCA ACCGCAAC AGTA AAAT GTAGCGGCATCTAGCCAGCAGATGTGTCACTTGCTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTTCTTCACTCGGACAGAGTCACA GAGCAGAAATGCCTGGTGCAGGCAGAGGCTGATGCATTCCGCATTGTCATGGCATGGTATGTTGGCCTG TTTTTTTTTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTTTTTA                                                                                                                    ]




>consensus_10030#0
CGGCGGTGAACGAGCGCGGTGTGCCGGCCGGACGAGTTCTGGGGGGAGACCCGTGCGCGT
TCGTCACCTCAAGCAGGCGGCGGCGCGGTGACGCGGCGGACGTGTCGCGTGGAGCCGGGA
GCGCATGCCGCGGTACATGGTCCCAAAGACGGTGATCTTCCGCGACGAGTTACCGAAGAC
GTCCACCGGAAAGATCCAGAAGTACGTGCTCCGGAATATCGCCAAGGAGATGGGGCCCAC
CACGGGCACCAACACCAACCGCAACAGTAAAATGTAGCGGCATCTAGCCAGCAGATGTGT
CACTTGCTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTTCTTCACTCGGACAGAGTCACAG
AGCAGAAATGCCTGGTGCAGGCAGAGGCTGATGCATTCCGCATTGTCATGGCATGGTATG
TTGGCCTGTTTTTTTTTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTTTTTAAA
GACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGTGTGTAAA
TTAAGAAAAAAATCTTTTAAACCCAATTGTTCCATGATTTAAAAAAAAAA

consensusID : consensus_10030#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence

                              [CACCCACCACCCACCCGCACAGTAAATGTACGGCATCTACCCACCCAGATGTGGTCACTTGCTTTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTGTCTTCACTCGGACAGAGTCACAGACACAGAAATGCCTGGTGCACGCCAGAGGCTGATGCACTTCCGCACTTGTCACTGGCACTGGTATGTTGGCCTGTTTGTGTTTTGTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGTGTGTAAATTACGAGACGAATCTTTTAAACCCAATTGTTCCATGATTTAAAAAAAAAA]

[+] EMBL BI811969             [CACCCACCACCCACCCGCACAGTAAATGTACGGCATCTACCCACCCAGATGTGGTCACTTGCTTTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTGTCTTCACTCGGACAGAGTCACAGACACAGAAATGCCTGGTGCACGCCAGAGGCTGATGCACTTCCGCACTTGTCACTGGCACTGGTATGTTGGCCTGTTTGTGTTTTGTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGTGTGTAAATTACGAGACGAATCTTTTAAACCCAATTGTTCCATGATTTAAAAAAAAAA]




>consensus_10030#1
CACCCACCACCCACCCGCACAGTAAATGTACGGCATCTACCCACCCAGATGTGGTCACTT
GCTTTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTGTCTTCACTCGGACAGAGTCACAGAC
ACAGAAATGCCTGGTGCACGCCAGAGGCTGATGCACTTCCGCACTTGTCACTGGCACTGG
TATGTTGGCCTGTTTGTGTTTTGTTTTTTGGGGGGGGTGTTTAGATGCACCGATAATTTT
TTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACATAGTTTGT
GTGTAAATTACGAGACGAATCTTTTAAACCCAATTGTTCCATGATTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10030#0      CGGCGGTGAACGAGCGCGGTGTGCCGGCCGGACGAGTTCTGGGGGGAGACCCGTGCGCGT 60
consensus_10030#1      ------------------------------------------------------------
                                                                                   

consensus_10030#0      TCGTCACCTCAAGCAGGCGGCGGCGCGGTGACGCGGCGGACGTGTCGCGTGGAGCCGGGA 120
consensus_10030#1      ------------------------------------------------------------
                                                                                   

consensus_10030#0      GCGCATGCCGCGGTACATGGTCCCAAAGACGGTGATCTTCCGCGACGAGTTACCGAAGAC 180
consensus_10030#1      ------------------------------------------------------------
                                                                                   

consensus_10030#0      GTCCACCGGAAAGATCCAGAAGTACGTGCTCCGGAATATCGCCAAGGAGATGGGGCCCAC 240
consensus_10030#1      ------------------------------------------------------------
                                                                                   

consensus_10030#0      CACGGGCACCAAC-ACCAACCGCAACAGTAAAATGTAGCGGCATCTAGCCAGC-AGATGT 298
consensus_10030#1      ------CACCCACCACCCACCCGCACAGTAAA-TGTA-CGGCATCTACCCACCCAGATGT 52
                             **** ** *** ***   ******** **** ********* *** * ******

consensus_10030#0      G-TCACTTGCTTTTT--AGCGTCGTCGTCGTCGTCGTCGTCT-TCTTCACTCGGACAGAG 354
consensus_10030#1      GGTCACTTGCTTTTTTTAGCGTCGTCGTCGTCGTCGTCGTCTGTCTTCACTCGGACAGAG 112
                       * *************  ************************* *****************

consensus_10030#0      TCACAGA-GCAGAAATGCCTGGTGCAGGC-AGAGGCTGATGCA-TTCCGCA-TTGTCA-T 409
consensus_10030#1      TCACAGACACAGAAATGCCTGGTGCACGCCAGAGGCTGATGCACTTCCGCACTTGTCACT 172
                       *******  ***************** ** ************* ******* ****** *

consensus_10030#0      GGCA-TGGTATGTTGGCCTGTTT---TTTTTTTTTTTGGGGGGGGTGTTTAGATGCACCG 465
consensus_10030#1      GGCACTGGTATGTTGGCCTGTTTGTGTTTTGTTTTTTGGGGGGGGTGTTTAGATGCACCG 232
                       **** ******************   **** *****************************

consensus_10030#0      ATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACA 525
consensus_10030#1      ATAATTTTTTTTAAAGACATGTACGAAGTATTAAATATTAGACGAAAAAAACTAATTACA 292
                       ************************************************************

consensus_10030#0      TAGTTTGTGTGTAAATTAAGAAAAAAATCTTTTAAACCCAATTGTTCCATGATTTAAAAA 585
consensus_10030#1      TAGTTTGTGTGTAAATTACGAGACGAATCTTTTAAACCCAATTGTTCCATGATTTAAAAA 352
                       ****************** ** *  ***********************************

consensus_10030#0      AAAAA 590
consensus_10030#1      AAAAA 357
                       *****