These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 953 fasta sequence [CACACGCGAGCGGAGCCGGAGGAGGAGACGGAGCCGGCAGGATCCACCACTGCTCCAGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACGCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTCGACGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTGCAACCACGC-TTTCCATCTCCACT-GCATACTCAAGT-GGGTCAATTCTCAAACATCCACACCACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATATCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCAGGAAAACTTTTCTGGAACTTAGAAATGTTGTCTTCAAGTACTATGTACTAATATTTTCTGCAAATGCTGATGGTCACAATCTGCTAAGTGAAACTGTGAGCCAGTTTCATATCTGTAGTGTCCTTTTGGGAGTCTGATCGAGCAAATGAATTGTTACATTTGAAAGGCTGAATAATCTGAGGTTATCACAAATTTTCTCTTACTGTTTATTTTCAGAAAGATTATATATTTGTATTTACCAACCAAAGATGATTAATTGTGTTCGTGTAGACTAGTACAAAAGCAATCATGTAACATCTAGCAGGTTGTGTATATTTTTTCCCTGTAATTCCTAACTTCATCAAAGCATCTCTCCCTTTGAGGAGCAACTGATAGACCCTAACCTAAAAATGCAGTATGATTCAGAACGAGTTATACCAGTGTTTGTTTATATGGTGAGACCCATTGTACAGTCACTCACAGAAAGTTTTATCTTAATAAATTCATGACATGCT] [+] EMBL AK112010 [CACACGCGAGCGGAGCCGGAGGAGGAGACGGAGCCGGCAGGATCCACCACTGCTCCAGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACGCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTCGACGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTGCAACCACGC TTTCCATCTCCACT GCATACTCAAGT GGGTCAATTCTCAAACATCCACACCACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATATCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCAGGAAAACTTTTCTGGAACTTAGAAATGTTGTCTTCAAGTACTATGTACTAATATTTTCTGCAAATGCTGATGGTCACAATCTGCTAAGTGAAACTGTGAGCCAGTTTCATATCTGTAGTGTCCTTTTGGGAGTCTGATCGAGCAAATGAATTGTTACATTTGAAAGGCTGAATAATCTGAGGTTATCACAAATTTTCTCTTACTGTTTATTTTCAGAAAGATTATATATTTGTATTTACCAACCAAAGATGATTAATTGTGTTCGTGTAGACTAGTACAAAAGCAATCATGTAACATCTAGCAGGTTGTGTATATTTTTTCCCTGTAATTCCTAACTTCATCAAAGCATCTCTCCCTTTGAGGAGCAACTGATAGACCCTAACCTAAAAATGCAGTATGATTCAGAACGAGTTATACCAGTGTTTGTTTATATGGTGAGACCCATTGTACAGTCACTCACAGAAAGTTTTATCTTAATAAATTCATGACATGCT] [+] EMBL AU065611 [ TCCAGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGA NTCAAGGCTTCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACGCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTCGACGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTGCAACCACGCTTTTCCATCTCCACTGGCATACTCAAGTGGGGTCAATTCTC AACATCCANACCACTTTGnc ] [+] EMBL AK121656 [ AGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACGCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTCGACGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTGCAACCACGC TTTCCATCTCCACT GCATACTCAAGT GGGTCAATTCTCAAACATCCACACCACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATATCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCAGGAAAACTTTTCTGGAACTTAGAAATGTTGTCTTCAAGTACTATGTACTAATATTTTCTGCAAATGCTGATGGTCACAATCTGCTAAGTGAAACTGTGAGCCAGTTTCATATCTGTAGTGTCCTTTTGGGAGTCTGATCGAGCAAATGAATTGTTACATTTGAAAGGCTGAATAATC ] [+] EMBL CA305829 [ CCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACGCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTCGACGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTGCAACCACGC TTTCCATCTCCACT GCATACTCAAGT GGGTCAATTCTCAAACATCCACACCACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATATCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCAGGAAAACTTTTCTGGAACTTAGAAATGTT ] [+] EMBL BI804255 [ CCACGC TTTCCATCTCCACT GCATACTCAAGT GGGTCAATTCTCAAACATCCACACCACTTTGCCC ATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATATCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCAGGAAAACTTTTCTGGAACTTAGAAATGTTGTCTTCAAGTACTATGTACTAATATTTTCTGCAAATGCTGATGGTCAC ATCTGCTAAGTGAAACTGTGAGCCAGTTTCATATCTGTAGTGTCCTTTTGGGAGTCTGATCGAGC AATGAATTGTTACATTTGAAAGGCTGAATAAaaa ] consensusID : consensus_10034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence [CGCACCACTGCTCCAGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACNCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTTCGAACGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTGCAACCACGCTTTCCATCTCCACTGCATACTCAAGTGGGTCAATTCTCAAACATCCACACCACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATATCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCNGGAAAACTTTTCTGGAACTTAGAAATGTTGTCTTCAAGTACTATGTACTNATATTTTCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU030058 [CGCACCACTGCTCCAGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCTTCCTCTCCCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGCTTCTTGGACATGGGACNCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTTCGAACGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTGCAACCACGCTTTCCATCTCCACTGCATACTCAAGTGGGTCAATTCTCAAACATCCACACCACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATATCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCNGGAAAACTTTTCTGGAACTTAGAAATGTTGTCTTCAAGTACTATGTACTNATATTTTCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10034#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [GGAGCGGAGGAGGAGACGGAGCCGGCAGGATCCACCACTGCTCCAGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGTCAAGGCTTCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGTTGTCTTTTNNGACATTTGGACGTCCAGGNTGAAACCTGTGNTATATTCAGGATGGCATTCGACGGCTGCTGNCCTGATTGTAAGTTCCCCGGCGACGATTTCNCGNTCATCTGGGGCTCCTGCAANCACGGTTTCCATNTNCACTTGATACTNAAGTGGGTCAATTCTCAANC] [+] EMBL OSC18641 [GGAGCGGAGGAGGAGACGGAGCCGGCAGGATCCACCACTGCTCCAGCTCTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGTCAAGGCTTCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGTTGTCTTTTNNGACATTTGGACGTCCAGGNTGAAACCTGTGNTATATTCAGGATGGCATTCGACGGCTGCTGNCCTGATTGTAAGTTCCCCGGCGACGATTTCNCGNTCATCTGGGGCTCCTGCAANCACGGTTTCCATNTNCACTTGATACTNAAGTGGGTCAATTCTCAANC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10034#0 CACACGCGAGCGGAGCCGGAGGAGGAGACGGAGCCGGCAGGATCCACCACTGCTCCAGCT 60 consensus_10034#2 -----------GGAGC-GGAGGAGGAGACGGAGCCGGCAGGATCCACCACTGCTCCAGCT 48 consensus_10034#1 ------------------------------------------CGCACCACTGCTCCAGCT 18 **************** consensus_10034#0 CTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCT 120 consensus_10034#2 CTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAG-TCAAGGCT 107 consensus_10034#1 CTCTCCACTCTCACTCCCCGATTCGCCGGCGAGCAGGCGGCGGCGGCGGAGCTCAAGGCT 78 *************************************************** ******** consensus_10034#0 TCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGC 180 consensus_10034#2 TCCTCTCCGCTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGTTGTC 167 consensus_10034#1 TCCTCTCC-CTCCGCAGGTACCAAGATGAAGGTCAAGATTCTTCAGTGGCATTCGGTGGC 137 ******** ********************************************** ** * consensus_10034#0 TTCTTGGACATG-GGACGCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTC--GA 237 consensus_10034#2 TTTTNNGACATTTGGACGTCCAGGNTGAAACCTGTGNTATATTCAGGATGGCATTC--GA 225 consensus_10034#1 TTCTTGGACATG-GGACNCCCAGGATGAAACCTGTGGTATATGCAGGATGGCATTTCGAA 196 ** * ***** **** ***** *********** ***** ************ * consensus_10034#0 CGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTG 297 consensus_10034#2 CGGCTGCTGNCCTGATTGTAAGTTCCCCGGCGACGATTTCNCGNTCATCTGGGGCTCCTG 285 consensus_10034#1 CGGCTGCTGCCCTGATTGTAAGTTCCCCGGCGACGATTGCCCGCTCATCTGGGGCTCCTG 256 ********* **************************** * ** **************** consensus_10034#0 CAACCACGCTTTCCATCTCCACTGCATACTCAAGTGGGTCAATTCTCAAACATCCACACC 357 consensus_10034#2 CAANCACGGTTTCCATNTNCACTTGATACTNAAGTGGGTCAATTCTCAANC--------- 336 consensus_10034#1 CAACCACGCTTTCCATCTCCACTGCATACTCAAGTGGGTCAATTCTCAAACATCCACACC 316 *** **** ******* * **** ***** ****************** * consensus_10034#0 ACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATA 417 consensus_10034#2 ------------------------------------------------------------ consensus_10034#1 ACTTTGCCCAATGTGCCGTAGGGAGTGGCAATTCAAGGGCTAATGGCATCTGAAATTATA 376 consensus_10034#0 TCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCAGGAAAACTTTTCTGGAAC 477 consensus_10034#2 ------------------------------------------------------------ consensus_10034#1 TCACTAGTATCTAGTTTGCATGTTTCCTTGTAGAGAACTGCNGGAAAACTTTTCTGGAAC 436 consensus_10034#0 TTAGAAATGTTGTCTTCAAGTACTATGTACTAATATTTTCTGCAAATGCTGATGGTCACA 537 consensus_10034#2 ------------------------------------------------------------ consensus_10034#1 TTAGAAATGTTGTCTTCAAGTACTATGTACTNATATTTTCTGCAAAAAAAAAAAAAAAAA 496 consensus_10034#0 ATCTGCTAAGTGAAACTGTGAGCCAGTTTCATATCTGTAGTGTCCTTTTGGGAGTCTGAT 597 consensus_10034#2 ------------------------------------------------------------ consensus_10034#1 AAAAAAAAAAAAAA---------------------------------------------- 510 consensus_10034#0 CGAGCAAATGAATTGTTACATTTGAAAGGCTGAATAATCTGAGGTTATCACAAATTTTCT 657 consensus_10034#2 ------------------------------------------------------------ consensus_10034#1 ------------------------------------------------------------ consensus_10034#0 CTTACTGTTTATTTTCAGAAAGATTATATATTTGTATTTACCAACCAAAGATGATTAATT 717 consensus_10034#2 ------------------------------------------------------------ consensus_10034#1 ------------------------------------------------------------ consensus_10034#0 GTGTTCGTGTAGACTAGTACAAAAGCAATCATGTAACATCTAGCAGGTTGTGTATATTTT 777 consensus_10034#2 ------------------------------------------------------------ consensus_10034#1 ------------------------------------------------------------ consensus_10034#0 TTCCCTGTAATTCCTAACTTCATCAAAGCATCTCTCCCTTTGAGGAGCAACTGATAGACC 837 consensus_10034#2 ------------------------------------------------------------ consensus_10034#1 ------------------------------------------------------------ consensus_10034#0 CTAACCTAAAAATGCAGTATGATTCAGAACGAGTTATACCAGTGTTTGTTTATATGGTGA 897 consensus_10034#2 ------------------------------------------------------------ consensus_10034#1 ------------------------------------------------------------ consensus_10034#0 GACCCATTGTACAGTCACTCACAGAAAGTTTTATCTTAATAAATTCATGACATGCT 953 consensus_10034#2 -------------------------------------------------------- consensus_10034#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||