These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1140 fasta sequence [CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGACACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAAAAAAAAAAAAAGAGGCCACA] [+] EMBL AK105013 [CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGACACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAAAAAAAAAAAAAGAGGCCACA] [+] EMBL CB686008 [ ACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAAC ] [+] EMBL AU181721 [ TCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCNCCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAAA ] [+] EMBL AU172645 [ CCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAAA ] [+] EMBL CF569136 [ CGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGA ] consensusID : consensus_10038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence [AAGCTCTACTTCACGNCCCCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGACGCGTCCGAGGAGGTGCGGCTAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCAGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTGTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAA] [+] EMBL BQ906972 [AAGCTCTACTTCACGNCCCCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGACGCGTCCGAGGAGGTGCGGCTAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCAGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTGTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAA] [+] EMBL AA751912 [ agGAGG ACAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCANGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTGTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10038#0 CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTAC 60 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 TATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACC 120 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 CTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGG 180 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 GAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAG 240 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 TCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCC 300 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 GGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAA 360 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 CGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAA 420 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 AAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGAT 480 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 CCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTG 540 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 GCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTT 600 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 CCTATCATTGTGACACGCCGC-TGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGT 659 consensus_10038#1 --AAGCTCTACTTCACGNCCCCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGT 58 * * * **** * * ************************************** consensus_10038#0 GCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGC-AGCTGGAGGAGCAGGC 718 consensus_10038#1 GCCGAGCTCGGCGGCGTCAAG-ACGCGTCCGAGGAGGTGCGGCTAGCTGGAGGAGCAGGC 117 ********************* ********************* **************** consensus_10038#0 CGCCGCCGTGCTGAAGGCGGCACGC-GCCGAGATCGCCGCGGCGCTCAACAAGATGAAGA 777 consensus_10038#1 CGCCGCCGTGCTGAAGGCGGCACGCAGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGA 177 ************************* ********************************** consensus_10038#0 AGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCG 837 consensus_10038#1 AGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCG 237 ************************************************************ consensus_10038#0 AGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCG 897 consensus_10038#1 AGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCG 297 ************************************************************ consensus_10038#0 ACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAAT 957 consensus_10038#1 ACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAAT 357 ************************************************************ consensus_10038#0 GGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTT 1017 consensus_10038#1 GGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTT 417 ************************************************************ consensus_10038#0 TCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACT 1077 consensus_10038#1 TCTCCGTGTTTTATCCGTGTGTATACGCTGCTTGTCCTAAGAATGTAATTTCAGTGAACT 477 ********************************* ************************** consensus_10038#0 TCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAAAAAAAAAAAAAGAGGCC 1137 consensus_10038#1 TCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAA----------------- 520 ******************************************* consensus_10038#0 ACA 1140 consensus_10038#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||