cluster # 10039

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Oryza sativa
cluster # 10039 cluster # 10039 Sequences # 7 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10039#0 length = 1339 sequences # 7
consensusID : consensus_10039#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1339
fasta sequence
                              [GATCCCATTGTGTGAGCTCAATCGTGTGAAGAAGCTAGAGCATAAACTGCAACTGATAGGAAGCTAGCTAGCTAGCAGGAGGATCAATGGCGTCGTCTCCGACGA-TGTTGGTGGTGATGTGTAGTAGCTTGGCCATGGCGGTGATCCTGTCGTCGAGCTCGCCGGCGATGGCGCA-NTG-GACGTGGGGTTCTACAGCAAGACGTGCCCCAAGGTGGAGGAGATCGTGCGGGAGGAGATGATCAGGATCCTNGCCGTNGCCCCCACCCTCGCCGGCCCTCTCCTCCGCCTCCATTTCCACGACTGCTTCGTCA-GGGGTTGCGACGGGTCGGT-GCTGATCGAC-TCGACGGCGAGCAACACGGCGGAGAAGGACGCGCCGCCGAACCAGACGCTGCGAGGGTTCGGCTCCGTGCAGCGGATCAAGGCGAGGCTCGACGCCGCCTGCCCGGGCACCGTCTCCTGCGCCGACGTGCTCGCGCTCATGGCCCGCGACGCCGTCGCCCTCTCCGGCGGCCCCCGCTGGGCCGTGCCCCTCGGCCGGCGAGACGGCCGCGTCTCCGCCGCCAACGATACCACCACCCAGCTGCCGCCGCCCACCGCCAACATCACGCAGCTCGCCCGGATGTTCGCCGCCAAGGGCCTCGACATGAAAGACCTCGTCGTGCTCTCCGGCGGCCACACGCTCGGCACGGCGCACTGCTCGGCGTTCACGGACAGGCTCTACAACTTCACCGGCGCCAACAACGCCGGCGATGTCGACCCCGCCTTGGACCGGAGTTATCTAGCGCGGCTCCGGTCGCGGTGCGCCAGCCTCGCCGGCGACAACACGACGCTGGCGGAGATGGACCCCGGGAGCTTCCTCACCTTCGACGCCGGCTACTACCGGCTGGTGGCGAGGCGGCGGGGGCTCTTCCACTCCGACTCGTCGCTGCTAGACGACGCGTT-CACCGCCGGCTA-CGTGCGGCGGCAGGCCACCGGCATGTACGCCGCCGAGTTCTTCCAGGGATTTTGCCGAGTCGATGGTCAAGATGGGCGGCGTCGGCGTGCTCACCGGCGGCGAAGGCGAGATCAGGAAGAAGTGCTACGTCATCAACTAATAATTAATCTACGTATTATAGCTTAATTAAGCAATTAAGCTCGTAATTATGTGTCTTAATTTTTCCTGCTGATTATTGATTAAGTGTTCCCTAATTAATCATGCGTGTAACTGATGTATGTGTAGAGTGGTGGCGACATATCGATCTATACTAGTTTTACTTGGATTACTTTGTTTGTTAATTGTATTATTATGCAATGTAACTAAGAAATTAATCAAATAATGAATCAAGTATTGCACAAAAAA]

[+] EMBL AK108713             [GATCCCATTGTGTGAGCTCAATCGTGTGAAGAAGCTAGAGCATAAACTGCAACTGATAGGAAGCTAGCTAGCTAGCAGGAGGATCAATGGCGTCGTCTCCGACGA TGTTGGTGGTGATGTGTAGTAGCTTGGCCATGGCGGTGATCCTGTCGTCGAGCTCGCCGGCGATGGCGCAGCTG GACGTGGGGTTCTACAGCAAGACGTGCCCCAAGGTGGAGGAGATCGTGCGGGAGGAGATGATCAGGATCCTCGCCGTCGCCCCCACCCTCGCCGGCCCTCTCCTCCGCCTCCATTTCCACGACTGCTTCGTCA GGGGTTGCGACGGGTCGGT GCTGATCGAC TCGACGGCGAGCAACACGGCGGAGAAGGACGCGCCGCCGAACCAGACGCTGCGAGGGTTCGGCTCCGTGCAGCGGATCAAGGCGAGGCTCGACGCCGCCTGCCCGGGCACCGTCTCCTGCGCCGACGTGCTCGCGCTCATGGCCCGCGACGCCGTCGCCCTCTCCGGCGGCCCCCGCTGGGCCGTGCCCCTCGGCCGGCGAGACGGCCGCGTCTCCGCCGCCAACGATACCACCACCCAGCTGCCGCCGCCCACCGCCAACATCACGCAGCTCGCCCGGATGTTCGCCGCCAAGGGCCTCGACATGAAAGACCTCGTCGTGCTCTCCGGCGGCCACACGCTCGGCACGGCGCACTGCTCGGCGTTCACGGACAGGCTCTACAACTTCACCGGCGCCAACAACGCCGGCGATGTCGACCCCGCCTTGGACCGGAGTTATCTAGCGCGGCTCCGGTCGCGGTGCGCCAGCCTCGCCGGCGACAACACGACGCTGGCGGAGATGGACCCCGGGAGCTTCCTCACCTTCGACGCCGGCTACTACCGGCTGGTGGCGAGGCGGCGGGGGCTCTTCCACTCCGACTCGTCGCTGCTAGACGACGCGTT CACCGCCGGCTA CGTGCGGCGGCAGGCCACCGGCATGTACGCCGCCGAGTTCTT CAGGGATTTTGCCGAGTCGATGGTCAAGATGGGCGGCGTCGGCGTGCTCACCGGCGGCGAAGGCGAGATCAGGAAGAAGTGCTACGTCATCAACTAATAATTAATCTACGTATTATAGCTTAATTAAGCAATTAAGCTCGTAATTATGTGTCTTAATTTTTCCTGCTGATTATTGATTAAGTGTTCCCTAATTAATCATGCGTGTAACTGATGTATGTGTAGAGTGGTGGCGACATATCGATCTATACTAGTTTTACTTGGATTACTTTGTTTGTTAATTGTATTATTATGCAATGTAACTAAGAAATTAATCAAATAATGAATCAAGTA            ]
[+] EMBL OSS12608A            [                         GTGAAGAAGCTAGAGCATAAACTGCAACTGATAGGAAGCTAGCTAGCTAGCAGGAGGATCAATGGCGTCGTCTCCGA GANTGTTGGTGGTNATGTGTAGTAGCTTNGACATGGCGGTGATCCTGTNGTCGAGCTCGACGGCGATGGCGCA NTGAGACGTGGGGTTCTACAGCAAGACGTNCCCCAAGGTGGAGGAGATCGTNCGGNAGGAGATGATCAGGATCCTTGCCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSS13344A            [                         GTGAAGAAGCTAGAGCATAAACTGCAACTGATAGGAAGCTAGCTAGCTAGCAGGAGGATCAATGGCGTCGTCTCCGACGA TGTTGGTGGTGATGTGTAGTAGCTTGGCCATGGCGGTGATCCTGTNGTCGAGCTCGCCGGCGATGGCGCA NTG GACGTGGGGTTCTACAGCAAGACGTGCCCCAAGGTGGAGGAGATCGTGCGGGAGGAGATGATCAGNATCCTNGCCGTNGCCCCCACCCTCGCCGGCCCTCTCCTCCGNCTCCATTTCCACGACTGCTTCGTCAGGGGGTTGCNACGGGTCGGTNGCTGATCGACTTCGACGGCGAGCAACACGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSS13316A            [                         GTGAAGAAGCTAGAGCATAAACTGCAACTGATAGGAAGCTAGCTAGCTAGCAGGAGGATCAATGGCGTCGTCTCCGACGA TGTTGGTGGTGATGTGTAGTAGCTTGGCCATGGCGGTGATCCTGTCGTCGAGCTCGCCGGCGATGGCGCA NTN GACGTGGGGTTCTACAGCAAGACGTGCCCCAAGGTGGAGGAGATCGTGCGGGAGGAGATGATCAGGATCCTNGCCGTNGCCCCCACCCTCGCCGGCCCTCTCCTCCGCCTCCATTTCCACGACTGTTTCGTCA GGGGTTGCGACGGGTCGGT GCTGATCGAC TCGACGGCGAGCAACACGGCGGAGAAGGACGCGCCGCCGAACCAGACGCTGCGAGGGTTCGGCTCCGTGCAGCGat                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU032675             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ctTTCCANTCCGACTCGTCGCTGTTAGACGACGCGTTCCACCGCCGGCTATCGTGCGGCGGCAGGCCACCGGCATGTACGCCGCCGAGTTCTTCCAGGGATTTTGCCGAGTCGATGGTCAAGATGGGCGGCGTCGGCGTGNTCACCGGCGGCGAAGGCGAGATCAGGAAGAAGTGCTACGTCATCAACTAATAATTAATCTACGTATTATAGCTTAATTAAGCAATTAAGCTCGTAATTATGTGTCTTAATTTTTCCTGCTGATTATTGATTAAGTGTTCCCTAATTAATCATGCGTGTAACTGATGTATGTGTAGAGTGGTGGCGACATATCGATCTATACTAGTTTTACTTGGATTACTTTGTTTGTTAATTGTATTATTATGCAATGTAACTAAGAAATTAATCAAATAATGAATCAAGTATTGCACAAAAAA]
[+] EMBL C20534               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCCACTCCGACTCGNCGCTGCTAGACGACGCGTT CACCGCCGGCTA CGTNCGGCGGCAGGCCACCGGCATGTACGCCGCCGAGTTCTTCCAGGGATTTTGCCGAGTCGATGGTCAAGATGGGCGNCGTCGNCGTGCTCACCGGCGNCGAAGGCGAGATCAGGAAGAAGTGCTACGTCATCAACTAATAATTAATCTNCGTATTATAGCTTAATTAAGCAATTAAGCNCGTAATTATGTGTCTTAATTTTTCCTGCTGATTATTGATTAAGTGTTCCCTAATTAATCATGCGTGTAACTGATGTATGTGTAGAGTGGTGGCGACATATCGATCTATACTNGTTTTACTTGGATTACTTTGTTTGTTAATTGTATTATTATGCNATGTAACTAAGAAATTAATCAAATAATGAATCAAGTATTGCACAAAAA ]
[+] EMBL C20531               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATTAATCTACGTATTATAGCTTAATTAAGCAATTAAGCTCGTAANTATGTGNCTTAATTTTTCCTGCTGATTATTGATTAAGTGTTCCCTAATTAATCATGCGTGTAACTGATGTATGTGTAGAGTGGTGGCGACATATCGATCTATACTNGTTTTACTTGGATTACTTTGTTTGTTAATTGTATTATTATGCNATGTAACTAAGAAATTAATCAAATAATGAATCAAGTNTTGCACAAAAA ]




>consensus_10039#0
GATCCCATTGTGTGAGCTCAATCGTGTGAAGAAGCTAGAGCATAAACTGCAACTGATAGG
AAGCTAGCTAGCTAGCAGGAGGATCAATGGCGTCGTCTCCGACGATGTTGGTGGTGATGT
GTAGTAGCTTGGCCATGGCGGTGATCCTGTCGTCGAGCTCGCCGGCGATGGCGCANTGGA
CGTGGGGTTCTACAGCAAGACGTGCCCCAAGGTGGAGGAGATCGTGCGGGAGGAGATGAT
CAGGATCCTNGCCGTNGCCCCCACCCTCGCCGGCCCTCTCCTCCGCCTCCATTTCCACGA
CTGCTTCGTCAGGGGTTGCGACGGGTCGGTGCTGATCGACTCGACGGCGAGCAACACGGC
GGAGAAGGACGCGCCGCCGAACCAGACGCTGCGAGGGTTCGGCTCCGTGCAGCGGATCAA
GGCGAGGCTCGACGCCGCCTGCCCGGGCACCGTCTCCTGCGCCGACGTGCTCGCGCTCAT
GGCCCGCGACGCCGTCGCCCTCTCCGGCGGCCCCCGCTGGGCCGTGCCCCTCGGCCGGCG
AGACGGCCGCGTCTCCGCCGCCAACGATACCACCACCCAGCTGCCGCCGCCCACCGCCAA
CATCACGCAGCTCGCCCGGATGTTCGCCGCCAAGGGCCTCGACATGAAAGACCTCGTCGT
GCTCTCCGGCGGCCACACGCTCGGCACGGCGCACTGCTCGGCGTTCACGGACAGGCTCTA
CAACTTCACCGGCGCCAACAACGCCGGCGATGTCGACCCCGCCTTGGACCGGAGTTATCT
AGCGCGGCTCCGGTCGCGGTGCGCCAGCCTCGCCGGCGACAACACGACGCTGGCGGAGAT
GGACCCCGGGAGCTTCCTCACCTTCGACGCCGGCTACTACCGGCTGGTGGCGAGGCGGCG
GGGGCTCTTCCACTCCGACTCGTCGCTGCTAGACGACGCGTTCACCGCCGGCTACGTGCG
GCGGCAGGCCACCGGCATGTACGCCGCCGAGTTCTTCCAGGGATTTTGCCGAGTCGATGG
TCAAGATGGGCGGCGTCGGCGTGCTCACCGGCGGCGAAGGCGAGATCAGGAAGAAGTGCT
ACGTCATCAACTAATAATTAATCTACGTATTATAGCTTAATTAAGCAATTAAGCTCGTAA
TTATGTGTCTTAATTTTTCCTGCTGATTATTGATTAAGTGTTCCCTAATTAATCATGCGT
GTAACTGATGTATGTGTAGAGTGGTGGCGACATATCGATCTATACTAGTTTTACTTGGAT
TACTTTGTTTGTTAATTGTATTATTATGCAATGTAACTAAGAAATTAATCAAATAATGAA
TCAAGTATTGCACAAAAAA
clustalw multiple alignements is not computed in this case