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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10055#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1148 fasta sequence
[CTCATCATCTATATCACGATCGATCACAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGCTGCGTCGGCGGCGCACGGGCGACNGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGCGACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACCTCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTGTTCGCGCGCNTCGACCTGCAGATCAAGCTCGTCGCCAACAACTCCGCCGGCACGGTCACCACC-TGCTACTTCATGTCGGAAGGGGAGTTGGATATCCACGATGAGGTGGACCTGGAGTTCCTCGGCAACGTCACCGGGCAGCCGTACACGCTGCACACCAACGTCTTCGCCAATGGCACCGGCGGCAAAGAGCAGCAGTTCCACCTCTGGTTCGACCCCACCACCGACTTCCACACCTACTCCATCGTCTGGACCTCGCAGCACATCCTTGTGCTGGTGGACGGGACGCCGATCCGGGAGATGAAGAACCACGCGGACAAGGGGATCGCCTACCCGTCGTCNCAGCGGATGCGGCTGTACGGGAGCCTGTGGAACGCCGACGACTGGGCCACGCAGGGCGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCGTCGCGCGGTACCGCAACTTCACCGCCACGGAAGCCGCGTCGTCGTCGTCGCCGGCAGGGTACGACCAGCAGATGGACGCCACGGCGCAGCAGGCGATGAAGTGGGCGCGCGACAAATACATGGTGTACGACTATTGCGCCGACAGCAAGCGGTTCCCGCAGGGNTTCCCGCCCGAGTGTTCCATGCCGTAGAGTGGAGTGGAGACGCGCCAAAGCCTCGGTGCACTTTGATGAACGCGGACTCGATCGAACTCACGCAGGGCACGCATTGACCTCGTTTTTTTATTTTTACTTCTCTTGATTGAATTGATTCATTCTTTCTATGTAAAGTAGATATATATATATATATATATATATATATATATATATATATATATGTATATGTATGCACGAAAGATTTAAAGAATGGAGTGTGAAAGAAAAAATATGTTTGCATTGCAAAAAAAAAAA]
[+] EMBL OSC107321 [CTCATCATCTATATCACGATCGATCACAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGCTGCGTCGGCGGCGCACGGGCGACNGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGCGACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACANCTCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTNTTCGCGCGCNTCGACCTNCAGATCAAGCTNGTCGGCAACAACTTCGCCGGCANGGTCAACACCTTGCTANTTCATGTCGGAAGGGGAGTTGGATATCCA ]
[+] EMBL AF443603 [ CATCTATATCACGATCGATCACAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGCTGCGTCGGCGGCGCACGGGCGACGGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGCGACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACCTCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTGTTCGCGCGCGTCGACCTGCAGATCAAGCTCGTCGCCAACAACTCCGCCGGCACGGTCACCACC TGCTACTTCATGTCGGAAGGGGAGTGGGATATCCACGATGAGGTGGACCTGGAGTTCCTCGGCAACGTCACCGGGCAGCCGTACACGCTGCACACCAACGTCTTCGCCAATGGCACCGGCGGCAAAGAGCAGCAGTTCCACCTCTGGTTCGACCCCACCACCGACTTCCACACCTACTCCATCGTCTGGACCTCGCAGCACATCCTTGTGCTGGTGGACGGGACGCCGATCCGGGAGATGAAGAACCACGCGGACAAGGGGATCGCCTACCCGTCGTCNCAGCGGATGCGGCTGTACGGGAGCCTGTGGAACGCCGACGACTGGGCCACGCAGGGCGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCGTCGCGCGGTACCGCAACTTCACCGCCACGGAAGCCGCGTCGTCGTCGTCGCCGGCAGGGTACGACCAGCAGATGGACGCCACGGCGCAGCAGGCGATGAAGTGGGCGCGCGACAAATACATGGTGTACGACTATTGCGCCGACAGCAAGCGGTTCCCGCAGGGNTTCCCGCCCGAGTGTTCCATGCCGTAGAGTGGAGTGGAGACGCGCCAAAGCCTCGGTGCACTTTGATGAACGCGGACTCGATCGAACTCACGCAGGGCACGCATTGACCTCGTTTTTTTATTTTTACTTCTCTTGATTGAATTGATTCATTCTTTCTATGTAAAGTAGATATATATATATATATATATATATATATATATATATATATATATGTATATGTATGCACGAAAGATTTAAAGAATGGAGTGTGAAAGAAAAAATATGTTTGCATTGCAAAAAAAAAAA]
[+] EMBL C25954 [ CAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGCTGCGTCGGCGGCGCACGGGCGACNGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGCGACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACCTCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTGTTCGCGCGCNTCGACCTGCAGATCAAGCTCGTCGCCAACAACTCCGCCGGCACGGTCACCACC TGCTACTTCATGTCGGAAGGGGAGTTGGATATCCACGATGAGGTGG ]
consensusID : consensus_10055#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1133 fasta sequence
[TTCACTTTCTCTTCTCATCATCTATATCACGATCGATCACAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGCTGCGTCGGCGGCGCACGGGCGACGGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGCGACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACCTCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTGTTCGCGCGCGTCGACCTGCAGATCAAGCTCGTCGCCAACAACTCCGCCGGCACGGTCACCACCTGCTACTTCATGTCGGAAGGGGAGTGGGATATCCACGATGAGGTGGACCTGGAGTTCCTCGGCAACGTCACCGGGCAGCCGTACACGCTGCACACCAACGTCTTCGCCAATGGCACCGGGGGCAAAGAGCAGCAGTTCCACCTCTGGTTCGACCCCACCACCGACTTCCACACCTACTCCATCGTCTGGACCTCGCAGCACATCCTTGTGCTGGTGGACGGGACGCCGATCCGGGAGATGAAGAACCACGCGGACAAGGGGATCGCCTACCCGTCGTCGCAGCGGATGCGGCTGTACGGGAGCCTGTGGAACGCCGACGACTGGGCCACGCAGGGCGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCGTCGCGCGGTACCGCAACTTCACCGCCACGGAAGCCGCGTCGTCGTCGTCGCCGGCAGGGTACGACCAGCAGATGGACGCCACGGCGCAGCAGGCGATGAAGTGGGCGCGCGACAACTACATGGTGTACGACTACTGCGCCGACAGCAAGCGGTTCCCGCAGGGCTTCCCGCCCGAGTGCTCCATGCCGTAGAGTGGAGTGGAGACGCGCCAAAGCCTCGGTGCACTTTGATGAACGCGGACTCGATCGAACTCACGCAGGGCACGCATTGACCTCGTTTTTTTATTTTTACTTCTCTTGATTGAATTGATTCATTCTTTCTATGTAAAGTAGATATATATATATATATATGTATATGTATGCACGAAAGATTTAAAGAATGGAGTGTGAAAGAAAAAATATGTTTGCATTGCAAAAAAAAA]
[+] EMBL AK070734 [TTCACTTTCTCTTCTCATCATCTATATCACGATCGATCACAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGCTGCGTCGGCGGCGCACGGGCGACGGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGCGACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACCTCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTGTTCGCGCGCGTCGACCTGCAGATCAAGCTCGTCGCCAACAACTCCGCCGGCACGGTCACCACCTGCTACTTCATGTCGGAAGGGGAGTGGGATATCCACGATGAGGTGGACCTGGAGTTCCTCGGCAACGTCACCGGGCAGCCGTACACGCTGCACACCAACGTCTTCGCCAATGGCACCGGGGGCAAAGAGCAGCAGTTCCACCTCTGGTTCGACCCCACCACCGACTTCCACACCTACTCCATCGTCTGGACCTCGCAGCACATCCTTGTGCTGGTGGACGGGACGCCGATCCGGGAGATGAAGAACCACGCGGACAAGGGGATCGCCTACCCGTCGTCGCAGCGGATGCGGCTGTACGGGAGCCTGTGGAACGCCGACGACTGGGCCACGCAGGGCGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCGTCGCGCGGTACCGCAACTTCACCGCCACGGAAGCCGCGTCGTCGTCGTCGCCGGCAGGGTACGACCAGCAGATGGACGCCACGGCGCAGCAGGCGATGAAGTGGGCGCGCGACAACTACATGGTGTACGACTACTGCGCCGACAGCAAGCGGTTCCCGCAGGGCTTCCCGCCCGAGTGCTCCATGCCGTAGAGTGGAGTGGAGACGCGCCAAAGCCTCGGTGCACTTTGATGAACGCGGACTCGATCGAACTCACGCAGGGCACGCATTGACCTCGTTTTTTTATTTTTACTTCTCTTGATTGAATTGATTCATTCTTTCTATGTAAAGTAGATATATATATATATATATGTATATGTATGCACGAAAGATTTAAAGA ]
[+] EMBL OSS1234A [ TATATCACGATCGATCACAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTNCTGCGTCGGCGGCGCACGGGCGACGGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGCGACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACCTCCGGCTCCGGGTGGAGGTCCAAGA ]
[+] EMBL OSS1173A [ TATATCACGATCGATCACAAAGAGGTTAACAGTAACACATGGGGTTCGGCTCGNGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGCTGCGTCGGCGGCGCACGGGCGACGGGGAGNATCGACGAGGGGCTGGAGGTGATGTGGNNCGACGGCCGNGGNAGCGTCTCGCC ]
[+] EMBL AU075356 [ CTACTCCATCGTCTGNACCTCGCAGCACATCCTTGTGCTGGTGGACGGGACGCCGATCCGGGAGATGAAGAACCACCCGGANAAGGGGATCGCCTACCCGTCGTCGCAGCGGATGCGGCTGTACGGGAGCCTGTGGAACGCCGACGACTGGGCCACGCAGGGCGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCGTCGCGCGGTACCGCAACTTCACCGCCACGGAAGCCGCGTCGTCGTCGTCGCCGGCAGGGTACGACCAGCAGATGGACGCCACGGCGCAGCAGGCGATGAAGTGGGCGCGCGACAACTACATGGTGTACGACTACTGCGCCGACAGCAAGCGGTTCCCGCAGGGCTTCCCGCCCGAGTGCTCCATGCCGTAGAGTGGAGTGGAGACGCGCCAAAGCCTCGGTGCACTTTGATGAACGCGGACTCGATCGAACTCACGCAGGGCACGCATTGACCTCGTTTTTTTATTTTTACTTCTCTTGATTGAATTGATTCATTCTTTCTATGTAAAGTAG ATATATATATATATGTATATGTATGCACGAAAGATTTAAAGAATGGAGTGTGAAAGAAAAAATATGTTTGCATTGCAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10055#0 -------------CTCATCATCTATATCACGATCGATCACAAAGAGGTTAACAGTAACAC 47
consensus_10055#1 TTCACTTTCTCTTCTCATCATCTATATCACGATCGATCACAAAGAGGTTAACAGTAACAC 60
***********************************************
consensus_10055#0 ATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGC 107
consensus_10055#1 ATGGGGTTCGGCTCGAGGGAGATGGCCTGCGCGCTCGTGGCGCTGGTGCTCGGGCTCTGC 120
************************************************************
consensus_10055#0 TGCGTCGGCGGCGCACGGGCGACNGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGC 167
consensus_10055#1 TGCGTCGGCGGCGCACGGGCGACGGGGAGGATCGACGAGGGGCTGGAGGTGATGTGGGGC 180
*********************** ************************************
consensus_10055#0 GACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACC 227
consensus_10055#1 GACGGCCGGGGGAGCGTCTCGCCGGACGGGCAGGTGATGGCGCTGTCGCTCGACCACACC 240
************************************************************
consensus_10055#0 TCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTGTTCGCGCGCNTCGACCTGCAGATC 287
consensus_10055#1 TCCGGCTCCGGGTGGAGGTCCAAGAACACGTACCTGTTCGCGCGCGTCGACCTGCAGATC 300
********************************************* **************
consensus_10055#0 AAGCTCGTCGCCAACAACTCCGCCGGCACGGTCACCACCTGCTACTTCATGTCGGAAGGG 347
consensus_10055#1 AAGCTCGTCGCCAACAACTCCGCCGGCACGGTCACCACCTGCTACTTCATGTCGGAAGGG 360
************************************************************
consensus_10055#0 GAGTTGGATATCCACGATGAGGTGGACCTGGAGTTCCTCGGCAACGTCACCGGGCAGCCG 407
consensus_10055#1 GAGTGGGATATCCACGATGAGGTGGACCTGGAGTTCCTCGGCAACGTCACCGGGCAGCCG 420
**** *******************************************************
consensus_10055#0 TACACGCTGCACACCAACGTCTTCGCCAATGGCACCGGCGGCAAAGAGCAGCAGTTCCAC 467
consensus_10055#1 TACACGCTGCACACCAACGTCTTCGCCAATGGCACCGGGGGCAAAGAGCAGCAGTTCCAC 480
************************************** *********************
consensus_10055#0 CTCTGGTTCGACCCCACCACCGACTTCCACACCTACTCCATCGTCTGGACCTCGCAGCAC 527
consensus_10055#1 CTCTGGTTCGACCCCACCACCGACTTCCACACCTACTCCATCGTCTGGACCTCGCAGCAC 540
************************************************************
consensus_10055#0 ATCCTTGTGCTGGTGGACGGGACGCCGATCCGGGAGATGAAGAACCACGCGGACAAGGGG 587
consensus_10055#1 ATCCTTGTGCTGGTGGACGGGACGCCGATCCGGGAGATGAAGAACCACGCGGACAAGGGG 600
************************************************************
consensus_10055#0 ATCGCCTACCCGTCGTCNCAGCGGATGCGGCTGTACGGGAGCCTGTGGAACGCCGACGAC 647
consensus_10055#1 ATCGCCTACCCGTCGTCGCAGCGGATGCGGCTGTACGGGAGCCTGTGGAACGCCGACGAC 660
***************** ******************************************
consensus_10055#0 TGGGCCACGCAGGGCGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCGTCGCGCGG 707
consensus_10055#1 TGGGCCACGCAGGGCGGGCGCGTCAAGACGGACTGGTCGCAGGCGCCGTTCGTCGCGCGG 720
************************************************************
consensus_10055#0 TACCGCAACTTCACCGCCACGGAAGCCGCGTCGTCGTCGTCGCCGGCAGGGTACGACCAG 767
consensus_10055#1 TACCGCAACTTCACCGCCACGGAAGCCGCGTCGTCGTCGTCGCCGGCAGGGTACGACCAG 780
************************************************************
consensus_10055#0 CAGATGGACGCCACGGCGCAGCAGGCGATGAAGTGGGCGCGCGACAAATACATGGTGTAC 827
consensus_10055#1 CAGATGGACGCCACGGCGCAGCAGGCGATGAAGTGGGCGCGCGACAACTACATGGTGTAC 840
*********************************************** ************
consensus_10055#0 GACTATTGCGCCGACAGCAAGCGGTTCCCGCAGGGNTTCCCGCCCGAGTGTTCCATGCCG 887
consensus_10055#1 GACTACTGCGCCGACAGCAAGCGGTTCCCGCAGGGCTTCCCGCCCGAGTGCTCCATGCCG 900
***** ***************************** ************** *********
consensus_10055#0 TAGAGTGGAGTGGAGACGCGCCAAAGCCTCGGTGCACTTTGATGAACGCGGACTCGATCG 947
consensus_10055#1 TAGAGTGGAGTGGAGACGCGCCAAAGCCTCGGTGCACTTTGATGAACGCGGACTCGATCG 960
************************************************************
consensus_10055#0 AACTCACGCAGGGCACGCATTGACCTCGTTTTTTTATTTTTACTTCTCTTGATTGAATTG 1007
consensus_10055#1 AACTCACGCAGGGCACGCATTGACCTCGTTTTTTTATTTTTACTTCTCTTGATTGAATTG 1020
************************************************************
consensus_10055#0 ATTCATTCTTTCTATGTAAAGTAGATATATATATATATATATATATATATATATATATAT 1067
consensus_10055#1 ATTCATTCTTTCTATGTAAAGTAGATATATATATATATATAT------------------ 1062
******************************************
consensus_10055#0 ATATATATGTATATGTATGCACGAAAGATTTAAAGAATGGAGTGTGAAAGAAAAAATATG 1127
consensus_10055#1 --------GTATATGTATGCACGAAAGATTTAAAGAATGGAGTGTGAAAGAAAAAATATG 1114
****************************************************
consensus_10055#0 TTTGCATTGCAAAAAAAAAAA 1148
consensus_10055#1 TTTGCATTGCAAAAAAAAA-- 1133
*******************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||