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Oryza sativa
cluster # 10068 cluster # 10068       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10068#0 length = 1584 sequences # 5  
consensus_10068#1 length = 663 sequences # 1  
consensus_10068#2 length = 541 sequences # 1  

consensusID : consensus_10068#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1584
fasta sequence
                              [CACCTACGCCTACGCGGGGAAGAGAAGACGAGACAAGAAGAGGAGAGGAGAGAAGAGAATCTCGTGGAATTCTCTCCCCCTCTCCTCGCCTCTCCAAGAACCCACCAATCCTCCCCCCCTCCCCCCCCAACACTCCACTGGCGCCGCACAGCTCCGATCTTGCCTCCGCCGCCGCCTTCTTCCGCTCCCAATTCGGGCCCGAATTCGGTCCGGGGGGGGTTTCTTGGTGATGATCATTGTATTAACCAAAACCTGAACCTAGTGTTGGCCCTACTGTAATAATTCAGTCACTTATCAGCAGCATATGGAATTAGGTGGCAACAATATGGGCCCAGATAATGGAGCAAACAACAATTCCAACTTGGCTGCAAGGCAACGCTTACGGTGGACAAATGAGCTGCACGAACGATTTGTTGAGGCTGTTACTCAACTTGGTGGTCCTGATAGAGCAACTCCGAAAGGAGTTCTAAGAATTATGGGTGTACAAGGGTTGACGATATACCATGTGAAAAGTCATTTGCAGAAATACAGGCTTGCAAAGTACATTCCCGACTCTTCAGCTGATGGTAACAAGGCTGAAAACAAAGACCCTGGAGATTTGCTTGCTGGACTTGAGGGATCCTCTGGCTTACAGATATCTGAAGCTCTGAAGCTGCAGATGGAGGTCCAAAAGCGTCTACATGAACAGTTAGAAGTACAAAGGCAGCTGCAGTTGCGCATTGAGGCGCAGGGCAAGTACCTCAAGAAGATCATTGAGGAGCAGCAGCGTCTCGGTGGAGTGAAATCTGAAACACCTGCTGCTGGTGCTTCCGTCACATTGCCAAGCGATCAGTTCCCTGATTCCGAAAGAACTGACCCCTCGACTCCTGCACCTACATCTGAATCTCCAACTCAAGGTGTACCTTCGAATAGGGACAATGGAGGACAAAACGAAGCAACCAAGAGCCCCCAGCGCGATGATTCTCTGTCCCGCCATGAACCACTAACCCCTGATTCCAACTGTCAGCCTGGTTCTCCTACCGCTAGTCCAAAGCATGAGAGGGCAGCAAAGAGGCAACGAGGTAATGGTGCAGAGTTCTCGGAAACTGACTTCGCCCTTCCTCATTCTATCTTCGAGTCGAGTTCGGGGTCAGAGTTCCAACAATGTTCCATGTCCTACTCAGGTCATTAGCATCTGGTGATACTCCTCACAGCATCTTCGCTAGCTTGTTCGAGACGAAGTAATGATCTAAGATCCGTGTTGTAGCTCTCAGTAGTATATTTCTAAGTCCCAATGGAGATGTTGGTAGAC-AAAAATGTTGTAGGTGTTCAGATGATTGTTTACATGATACTACATATGACAGCTATTTAAGCTTGTAA-TTTCGTGGCCTGTAAATTTTATTATCAGCTGTTGAGTTGGGAAGTTTGAAGGTTGCGCTTTGTCGCGGCGTCGACTTCTGCTCATCTGGGTAAATCTTTATTGACAAAAGTGTTTAACATGAACAATTTTTCGCGTGTAATTTGTTGTAAACTTGTAATGGTCAGTGGTCAGAAGCACAAGCTGTTGATGTTATGCTGTTACACTTGGATGTTACTATCATGGTT]

[+] EMBL AK103241             [CACCTACGCCTACGCGGGGAAGAGAAGACGAGACAAGAAGAGGAGAGGAGAGAAGAGAATCTCGTGGAATTCTCTCCCCCTCTCCTCGCCTCTCCAAGAACCCACCAATCCTCCCCCCCTCCCCCCCCAACACTCCACTGGCGCCGCACAGCTCCGATCTTGCCTCCGCCGCCGCCTTCTTCCGCTCCCAATTCGGGCCCGAATTCGGTCCGGGGGGGGTTTCTTGGTGATGATCATTGTATTAACCAAAACCTGAACCTAGTGTTGGCCCTACTGTAATAATTCAGTCACTTATCAGCAGCATATGGAATTAGGTGGCAACAATATGGGCCCAGATAATGGAGCAAACAACAATTCCAACTTGGCTGCAAGGCAACGCTTACGGTGGACAAATGAGCTGCACGAACGATTTGTTGAGGCTGTTACTCAACTTGGTGGTCCTGATAGAGCAACTCCGAAAGGAGTTCTAAGAATTATGGGTGTACAAGGGTTGACGATATACCATGTGAAAAGTCATTTGCAGAAATACAGGCTTGCAAAGTACATTCCCGACTCTTCAGCTGATGGTAACAAGGCTGAAAACAAAGACCCTGGAGATTTGCTTGCTGGACTTGAGGGATCCTCTGGCTTACAGATATCTGAAGCTCTGAAGCTGCAGATGGAGGTCCAAAAGCGTCTACATGAACAGTTAGAAGTACAAAGGCAGCTGCAGTTGCGCATTGAGGCGCAGGGCAAGTACCTCAAGAAGATCATTGAGGAGCAGCAGCGTCTCGGTGGAGTGAAATCTGAAACACCTGCTGCTGGTGCTTCCGTCACATTGCCAAGCGATCAGTTCCCTGATTCCGAAAGAACTGACCCCTCGACTCCTGCACCTACATCTGAATCTCCAACTCAAGGTGTACCTTCGAATAGGGACAATGGAGGACAAAACGAAGCAACCAAGAGCCCCCAGCGCGATGATTCTCTGTCCCGCCATGAACCACTAACCCCTGATTCCAACTGTCAGCCTGGTTCTCCTACCGCTAGTCCAAAGCATGAGAGGGCAGCAAAGAGGCAACGAGGTAATGGTGCAGAGTTCTCGGAAACTGACTTCGCCCTTCCTCATTCTATCTTCGAGTCGAGTTCGGGGTCAGAGTTCCAACAATGTTCCATGTCCTACTCAGGTCATTAGCATCTGGTGATACTCCTCACAGCATCTTCGCTAGCTTGTTCGAGACGAAGTAATGATCTAAGATCCGTGTTGTAGCTCTCAGTAGTATATTTCTAAGTCCCAATGGAGATGTTGGTAGAC AAAAATGTTGTAGGTGTTCAGATGATTGTTTACATGATACTACATATGACAGCTATTTAAGCTTGTAA TTTCGTGGCCTGTAAATTTTATTATCAGCTGTTGAGTTGGGAAGTTTGAAGGTTGCGCTTTGTCGCGGCGTCGACTTCTGCTCATCTGGGTAAATCTTTATTGACAAAAGTGTTTAACATGAACAATTTTTCGCGTGTAATTTGTTGTAAACTTGTAATGGTCAGTGGTCAGAAGCACAAGCTGTTGATGTTATGCTGTTACACTTGGATGTTACTATCATGGTT]
[+] EMBL CB656351             [                           ACGAGCCTTGAAGAGGAGAGGAGAGAAGAGAATCTCGTGGAATTCTCTCCCCCTCTCCTCGCCTCTCCAAGAACCCACCAATCCTCCCCCCCTCCCCCCCCAACACTCCACTGGCGCCGCACAGCTCCGATCTTGCCTCCGCCGCCGCCTTCTTCCGCTCCCAATTCGGGCCCGAATTCGGTCCGGGGGGGGTTTCTTGGTGATGATCATTGTATTAACCAAAACCTGAACCTAGTGTTGGCCCTACTGTAATAATTCAGTCACTTATCAGCAGCATATGGAATTAGGTGGCAACAATATGGGCCCAGATAATGGAGCAAACAACAATTCCAACTTGGCTGCAAGGCAACGCTTACGGTGGACAAATGAGCTGCACGAACGATTTGTTGAGGCTGTTACTCAACTTGGTGGTCCTGATAGAGCAACTCCGAAAGGAGTTCTAAGAATTATGGGTGTACAAGGGTTGACGATATACCATGTGAAAAGTCATTTGCAGAAATACAGGCTTGCAAAGTACATTCCCGACTCTTCAGCTGATGGTAACAAGGCTGAAAACAAAGACCCTGGAGATTTGCTTGCTGGACTTGAGGGATCCTCTGGCTTACAGATATCTGAAGCTCTGAAGCTGCAGATGGAGGTCCAAAAGCGTCTACATGAACAGTTAGAAGTACAAAGGCAGCTGCAGTTGCGCATTGAGGCGCAGGGCAAGTACCTCAAGAAGATCATTGAGGAGTAGCAGCGTCTCGGTGGAGTGAAATCTGAAACACCTGCTGCTGGTGCTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB677204             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATTGCCAAGCGATCAGTTCCCTGATTCCGAAAGAACTGACCCCTCGACTCCTGCACCTACATCTGAATCTCCAACTCAAGGTGTACCTTCGAATAGGGACAATGGAGGACAAAACGAAGCAACCAAGAGCCCCCAGCGCGATGATTCTCTGTCCCGCCATGAACCACTAACCCCTGATTCCAACTGTCAGCCTGGTTCTCCTACCGCTAGTCCAAAGCATGAGAGGGCAGCAAAGAGGCAACGAGGTAATGGTGCAGAGTTCTCGGAAACTGACTTCGCCCTTCCTCATTCTATCTTCGAGTCGAGTTCGGGGTCAGAGTTCCAACAATGTTCCATGTCCTACTCAGGTCATTAGCATCTGGTGATACTCCTCACAGCATCTTCGCTAGCTTGTTCGAGACGAAGTAATGATCTAAGATCCGTGTTGTAGCTCTCAGTAGTATATTTCTAAGTCCCAATGGAGATGTTGGTAGAC AAAAATGTTGTAGGTGTTCAGATGATTGTTTACATGATACTACATATGACAGCTATTTAAGCTTGTAA TTTCGTGGCCTGTAAATTTTATTATCAGCTGTTGAGTTGGGAAGTTTGAAGGTTGCGCTTTGTCGCGGCGTCGACTTCTGCTCATCTGGGTAAATCTTTATTGACAAAAGTGTTTAACATGAACAATTTTTCGCGTGTAATTTGTTGTAAACTTGTAATGGTCAGTGGTCAGAAGCACAAGCTGTTGATGTTAaaaaaagga                       ]
[-] EMBL CA763539             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCGAAAGAACTGACCCCTCGACTCCTGCACCTACATCTGAATCTCCAACTCAAGGTGTACCTTCGAATAGGGACAATGGAGGACAAAACGAAGCAACCAAGAGCCCCCAGCGCGATGATTCTCTGTCCCGCCATGAACCACTAACCCCTGATTCCAACTGTCAGCCTGGTTCTCCTACCGCTAGTCCAAAGCATGAGAGGGCAGCAAAGAGGCAACGAGGTAATGGTGCAGAGTTCTCCGAAACTGACTTCGCCCTTCCTCATTCTATCTTCGAGTCGAGTTCGGGGTCAGAGTTCCAACAATGTTCCATGTCCTACTCAGGTCATTAGCATCTGGTGATACTCCTCACAGCATCTTCGCTAGCTTGTTCGAGACGAAGTAATGATCTAAGATCCGTGTTGTAGCTCTCAGTAGTATATTTCTAAGTCCCAATGGAGATGTTGGTAGAC AAAAATGTTGTAGATGTTCAGATGATTGTTTACATGATACTACATATGACAGCTATTTAAGCTTGTAA TTTCGTGGCCTGTAAATTTTATTATCAGCTGTTGAGTTGGGAAGTTTGAAGGTTGCGCTTTGTCGCGGCGTCGACTTCTGCTCATCTGGGTAAATCTTTATTGACAAAAGTGTTTAACATGAACAATTTTTCGCGTGTAAaaaaaaaaa                                                                            ]
[+] EMBL BI806996             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AACTGTCAGCCTGGTTCTCCTACCGCTAGTCCAAAGCATGAGAGGGCAGCNAAGA GCAACGAGGTAATGGTGCAGAGTTCTCGGAAACTGACTTCGCCCTTCCTCATTCTATCTTCGAGTCGAGTTCGGGGTCAGAGTTCCAACAATGTTCCATGTCCTACTCAGGTCATTAGCATCTGGTGATACTCCTCACAGCATCTTCGCTAGCTTGTTCGAGACGAAGTAATGATCTAAGATCCGTGTTGTAGCTCTCAGTAGTATATTTCTAAGTCCCCATGGAGATGTTGGTAGACNNAAAATGTTGTAGGTGTTCAGATGATTGTTTACATGATACTACATATGACAGCTATTTAAGCTTGTAACCNTCGTGGCCTGTAAATTTTATTATCAGCTGTTGAGTTGGGAAGTTTGAAGGTTGCGCTTTGTCGCGGCGTCGACTTCTGCTCATCTGGGTAAATCTTTATTGACCAAAGTGTTTAACATGAAC ATTTTTCGCGTGTAAaaaaaaaa                                                                             ]


>consensus_10068#0 CACCTACGCCTACGCGGGGAAGAGAAGACGAGACAAGAAGAGGAGAGGAGAGAAGAGAAT CTCGTGGAATTCTCTCCCCCTCTCCTCGCCTCTCCAAGAACCCACCAATCCTCCCCCCCT CCCCCCCCAACACTCCACTGGCGCCGCACAGCTCCGATCTTGCCTCCGCCGCCGCCTTCT TCCGCTCCCAATTCGGGCCCGAATTCGGTCCGGGGGGGGTTTCTTGGTGATGATCATTGT ATTAACCAAAACCTGAACCTAGTGTTGGCCCTACTGTAATAATTCAGTCACTTATCAGCA GCATATGGAATTAGGTGGCAACAATATGGGCCCAGATAATGGAGCAAACAACAATTCCAA CTTGGCTGCAAGGCAACGCTTACGGTGGACAAATGAGCTGCACGAACGATTTGTTGAGGC TGTTACTCAACTTGGTGGTCCTGATAGAGCAACTCCGAAAGGAGTTCTAAGAATTATGGG TGTACAAGGGTTGACGATATACCATGTGAAAAGTCATTTGCAGAAATACAGGCTTGCAAA GTACATTCCCGACTCTTCAGCTGATGGTAACAAGGCTGAAAACAAAGACCCTGGAGATTT GCTTGCTGGACTTGAGGGATCCTCTGGCTTACAGATATCTGAAGCTCTGAAGCTGCAGAT GGAGGTCCAAAAGCGTCTACATGAACAGTTAGAAGTACAAAGGCAGCTGCAGTTGCGCAT TGAGGCGCAGGGCAAGTACCTCAAGAAGATCATTGAGGAGCAGCAGCGTCTCGGTGGAGT GAAATCTGAAACACCTGCTGCTGGTGCTTCCGTCACATTGCCAAGCGATCAGTTCCCTGA TTCCGAAAGAACTGACCCCTCGACTCCTGCACCTACATCTGAATCTCCAACTCAAGGTGT ACCTTCGAATAGGGACAATGGAGGACAAAACGAAGCAACCAAGAGCCCCCAGCGCGATGA TTCTCTGTCCCGCCATGAACCACTAACCCCTGATTCCAACTGTCAGCCTGGTTCTCCTAC CGCTAGTCCAAAGCATGAGAGGGCAGCAAAGAGGCAACGAGGTAATGGTGCAGAGTTCTC GGAAACTGACTTCGCCCTTCCTCATTCTATCTTCGAGTCGAGTTCGGGGTCAGAGTTCCA ACAATGTTCCATGTCCTACTCAGGTCATTAGCATCTGGTGATACTCCTCACAGCATCTTC GCTAGCTTGTTCGAGACGAAGTAATGATCTAAGATCCGTGTTGTAGCTCTCAGTAGTATA TTTCTAAGTCCCAATGGAGATGTTGGTAGACAAAAATGTTGTAGGTGTTCAGATGATTGT TTACATGATACTACATATGACAGCTATTTAAGCTTGTAATTTCGTGGCCTGTAAATTTTA TTATCAGCTGTTGAGTTGGGAAGTTTGAAGGTTGCGCTTTGTCGCGGCGTCGACTTCTGC TCATCTGGGTAAATCTTTATTGACAAAAGTGTTTAACATGAACAATTTTTCGCGTGTAAT TTGTTGTAAACTTGTAATGGTCAGTGGTCAGAAGCACAAGCTGTTGATGTTATGCTGTTA CACTTGGATGTTACTATCATGGTT



consensusID : consensus_10068#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 663
fasta sequence
                              [AAGAACTGCCCCCTCGACTCCTGCCCCTACATTTGAATCTCCCACTCCAGGTGTTCCTTCGAATAGGGGCAATGGAGGGCCAAACGAAGCAACCCAGAGCCCCCAGCGCGATGATTTTCTGTCCCCCCATGAACCCCTAACCCCTGATTCCAACTGTCAGCCTGGTTTTCCTACCGCTAGTCCCAAGCCTGAGAGGGCACCAAAGAGGCACCGAGGTAATGGTGCAGAGTTCTCGGAAACTGACTTCGCCCTTCCTCCTTCTATTTTCGAGTCGAGTTCGGGGTCAGAGTTCCCCCAATGTTCCCTGTCCTACTCAGGTCCTTAGCATCTGGTGATACTCCTCCCAGCATTTTCGCTAGCTTGTTCGAGACGAAGTAATGATTTAAGATCCCTGTTGTAGCTCCCCGTAGTATATTTTTAAGTCCCCAAGGAGATGTTGGTAGCCAAAAATGTTGTAGATGTTCAGATGATTGTTTCCCTGATACTCCCTATGGCAGCTATTTAAGCTTGTAATTTCGTGGCCCGTAAATTTTATTATCACCTGTTGAGTTGGGAAGTTTTAAGGTTGCCCTTTGTCCCGGCGTCGACTTTTGCTCATCTGGGTAAATCTTTATTGCCCAAAGTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA762125             [AAGAACTGCCCCCTCGACTCCTGCCCCTACATTTGAATCTCCCACTCCAGGTGTTCCTTCGAATAGGGGCAATGGAGGGCCAAACGAAGCAACCCAGAGCCCCCAGCGCGATGATTTTCTGTCCCCCCATGAACCCCTAACCCCTGATTCCAACTGTCAGCCTGGTTTTCCTACCGCTAGTCCCAAGCCTGAGAGGGCACCAAAGAGGCACCGAGGTAATGGTGCAGAGTTCTCGGAAACTGACTTCGCCCTTCCTCCTTCTATTTTCGAGTCGAGTTCGGGGTCAGAGTTCCCCCAATGTTCCCTGTCCTACTCAGGTCCTTAGCATCTGGTGATACTCCTCCCAGCATTTTCGCTAGCTTGTTCGAGACGAAGTAATGATTTAAGATCCCTGTTGTAGCTCCCCGTAGTATATTTTTAAGTCCCCAAGGAGATGTTGGTAGCCAAAAATGTTGTAGATGTTCAGATGATTGTTTCCCTGATACTCCCTATGGCAGCTATTTAAGCTTGTAATTTCGTGGCCCGTAAATTTTATTATCACCTGTTGAGTTGGGAAGTTTTAAGGTTGCCCTTTGTCCCGGCGTCGACTTTTGCTCATCTGGGTAAATCTTTATTGCCCAAAGTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10068#1 AAGAACTGCCCCCTCGACTCCTGCCCCTACATTTGAATCTCCCACTCCAGGTGTTCCTTC GAATAGGGGCAATGGAGGGCCAAACGAAGCAACCCAGAGCCCCCAGCGCGATGATTTTCT GTCCCCCCATGAACCCCTAACCCCTGATTCCAACTGTCAGCCTGGTTTTCCTACCGCTAG TCCCAAGCCTGAGAGGGCACCAAAGAGGCACCGAGGTAATGGTGCAGAGTTCTCGGAAAC TGACTTCGCCCTTCCTCCTTCTATTTTCGAGTCGAGTTCGGGGTCAGAGTTCCCCCAATG TTCCCTGTCCTACTCAGGTCCTTAGCATCTGGTGATACTCCTCCCAGCATTTTCGCTAGC TTGTTCGAGACGAAGTAATGATTTAAGATCCCTGTTGTAGCTCCCCGTAGTATATTTTTA AGTCCCCAAGGAGATGTTGGTAGCCAAAAATGTTGTAGATGTTCAGATGATTGTTTCCCT GATACTCCCTATGGCAGCTATTTAAGCTTGTAATTTCGTGGCCCGTAAATTTTATTATCA CCTGTTGAGTTGGGAAGTTTTAAGGTTGCCCTTTGTCCCGGCGTCGACTTTTGCTCATCT GGGTAAATCTTTATTGCCCAAAGTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAA



consensusID : consensus_10068#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence
                              [AAGAACTGACCCCTCGACTCCTGCACCTACATCTGAATCTCCAACTCAAGGTGTACCTTCGAATAGGGACAATGGAGGACAAAACGAAGCAACCAAGAGCCCCCAGCGCGATGATTCTCTGTCCCGCCATGAACCACTAACCCCTGATTCCAACTGTCAGCCTGGTTCTCCTACCGCTAGTCCAAAGCATGAGAGGGCAGCAAAGAGGCAACGAGGTAATGGTGCAGAGTTCTCGGAAACTGACTTCGCCCTTCCTCATTCTATCTTCGAGTCGAGTTCGGGGTCAGAGTTCCAACAATGTTCCATGTCCTACTCAGGTCATTAGCATCTGGTGATACTCCTCACAGCATCTTCGCTAGCTTGTTCGAGACGAAGTAATGATCTAAGATCCGTGTTGTAGCTCTCAGTAGTATATTTCTAAGTCCCAATGGAGATGTTGGTAGACAAAAATGTTGTAGGTGTTCAGATGATTGTTTACATGATACTACATATGACAGCTATTTAAGCTTGTAATTTCGTNNNCTGTANNNNNNNNNNNCAG]

[+] EMBL CF196432             [AAGAACTGACCCCTCGACTCCTGCACCTACATCTGAATCTCCAACTCAAGGTGTACCTTCGAATAGGGACAATGGAGGACAAAACGAAGCAACCAAGAGCCCCCAGCGCGATGATTCTCTGTCCCGCCATGAACCACTAACCCCTGATTCCAACTGTCAGCCTGGTTCTCCTACCGCTAGTCCAAAGCATGAGAGGGCAGCAAAGAGGCAACGAGGTAATGGTGCAGAGTTCTCGGAAACTGACTTCGCCCTTCCTCATTCTATCTTCGAGTCGAGTTCGGGGTCAGAGTTCCAACAATGTTCCATGTCCTACTCAGGTCATTAGCATCTGGTGATACTCCTCACAGCATCTTCGCTAGCTTGTTCGAGACGAAGTAATGATCTAAGATCCGTGTTGTAGCTCTCAGTAGTATATTTCTAAGTCCCAATGGAGATGTTGGTAGACAAAAATGTTGTAGGTGTTCAGATGATTGTTTACATGATACTACATATGACAGCTATTTAAGCTTGTAATTTCGTNNNCTGTANNNNNNNNNNNCAG]


>consensus_10068#2 AAGAACTGACCCCTCGACTCCTGCACCTACATCTGAATCTCCAACTCAAGGTGTACCTTC GAATAGGGACAATGGAGGACAAAACGAAGCAACCAAGAGCCCCCAGCGCGATGATTCTCT GTCCCGCCATGAACCACTAACCCCTGATTCCAACTGTCAGCCTGGTTCTCCTACCGCTAG TCCAAAGCATGAGAGGGCAGCAAAGAGGCAACGAGGTAATGGTGCAGAGTTCTCGGAAAC TGACTTCGCCCTTCCTCATTCTATCTTCGAGTCGAGTTCGGGGTCAGAGTTCCAACAATG TTCCATGTCCTACTCAGGTCATTAGCATCTGGTGATACTCCTCACAGCATCTTCGCTAGC TTGTTCGAGACGAAGTAATGATCTAAGATCCGTGTTGTAGCTCTCAGTAGTATATTTCTA AGTCCCAATGGAGATGTTGGTAGACAAAAATGTTGTAGGTGTTCAGATGATTGTTTACAT GATACTACATATGACAGCTATTTAAGCTTGTAATTTCGTNNNCTGTANNNNNNNNNNNCA G



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10068#0      CACCTACGCCTACGCGGGGAAGAGAAGACGAGACAAGAAGAGGAGAGGAGAGAAGAGAAT 60
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      ------------------------------------------------------------
                                                                                   

consensus_10068#0      CTCGTGGAATTCTCTCCCCCTCTCCTCGCCTCTCCAAGAACCCACCAATCCTCCCCCCCT 120
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      ------------------------------------------------------------
                                                                                   

consensus_10068#0      CCCCCCCCAACACTCCACTGGCGCCGCACAGCTCCGATCTTGCCTCCGCCGCCGCCTTCT 180
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      ------------------------------------------------------------
                                                                                   

consensus_10068#0      TCCGCTCCCAATTCGGGCCCGAATTCGGTCCGGGGGGGGTTTCTTGGTGATGATCATTGT 240
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      ------------------------------------------------------------
                                                                                   

consensus_10068#0      ATTAACCAAAACCTGAACCTAGTGTTGGCCCTACTGTAATAATTCAGTCACTTATCAGCA 300
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      ------------------------------------------------------------
                                                                                   

consensus_10068#0      GCATATGGAATTAGGTGGCAACAATATGGGCCCAGATAATGGAGCAAACAACAATTCCAA 360
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      ------------------------------------------------------------
                                                                                   

consensus_10068#0      CTTGGCTGCAAGGCAACGCTTACGGTGGACAAATGAGCTGCACGAACGATTTGTTGAGGC 420
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      ------------------------------------------------------------
                                                                                   

consensus_10068#0      TGTTACTCAACTTGGTGGTCCTGATAGAGCAACTCCGAAAGGAGTTCTAAGAATTATGGG 480
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      ------------------------------------------------------------
                                                                                   

consensus_10068#0      TGTACAAGGGTTGACGATATACCATGTGAAAAGTCATTTGCAGAAATACAGGCTTGCAAA 540
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      ------------------------------------------------------------
                                                                                   

consensus_10068#0      GTACATTCCCGACTCTTCAGCTGATGGTAACAAGGCTGAAAACAAAGACCCTGGAGATTT 600
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      ------------------------------------------------------------
                                                                                   

consensus_10068#0      GCTTGCTGGACTTGAGGGATCCTCTGGCTTACAGATATCTGAAGCTCTGAAGCTGCAGAT 660
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      ------------------------------------------------------------
                                                                                   

consensus_10068#0      GGAGGTCCAAAAGCGTCTACATGAACAGTTAGAAGTACAAAGGCAGCTGCAGTTGCGCAT 720
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      ------------------------------------------------------------
                                                                                   

consensus_10068#0      TGAGGCGCAGGGCAAGTACCTCAAGAAGATCATTGAGGAGCAGCAGCGTCTCGGTGGAGT 780
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      ------------------------------------------------------------
                                                                                   

consensus_10068#0      GAAATCTGAAACACCTGCTGCTGGTGCTTCCGTCACATTGCCAAGCGATCAGTTCCCTGA 840
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      ------------------------------------------------------------
                                                                                   

consensus_10068#0      TTCCGAAAGAACTGACCCCTCGACTCCTGCACCTACATCTGAATCTCCAACTCAAGGTGT 900
consensus_10068#2      ------AAGAACTGACCCCTCGACTCCTGCACCTACATCTGAATCTCCAACTCAAGGTGT 54
consensus_10068#1      ------AAGAACTGCCCCCTCGACTCCTGCCCCTACATTTGAATCTCCCACTCCAGGTGT 54
                             ******** *************** ******* ********* **** ******

consensus_10068#0      ACCTTCGAATAGGGACAATGGAGGACAAAACGAAGCAACCAAGAGCCCCCAGCGCGATGA 960
consensus_10068#2      ACCTTCGAATAGGGACAATGGAGGACAAAACGAAGCAACCAAGAGCCCCCAGCGCGATGA 114
consensus_10068#1      TCCTTCGAATAGGGGCAATGGAGGGCCAAACGAAGCAACCCAGAGCCCCCAGCGCGATGA 114
                        ************* ********* * ************* *******************

consensus_10068#0      TTCTCTGTCCCGCCATGAACCACTAACCCCTGATTCCAACTGTCAGCCTGGTTCTCCTAC 1020
consensus_10068#2      TTCTCTGTCCCGCCATGAACCACTAACCCCTGATTCCAACTGTCAGCCTGGTTCTCCTAC 174
consensus_10068#1      TTTTCTGTCCCCCCATGAACCCCTAACCCCTGATTCCAACTGTCAGCCTGGTTTTCCTAC 174
                       ** ******** ********* ******************************* ******

consensus_10068#0      CGCTAGTCCAAAGCATGAGAGGGCAGCAAAGAGGCAACGAGGTAATGGTGCAGAGTTCTC 1080
consensus_10068#2      CGCTAGTCCAAAGCATGAGAGGGCAGCAAAGAGGCAACGAGGTAATGGTGCAGAGTTCTC 234
consensus_10068#1      CGCTAGTCCCAAGCCTGAGAGGGCACCAAAGAGGCACCGAGGTAATGGTGCAGAGTTCTC 234
                       ********* **** ********** ********** ***********************

consensus_10068#0      GGAAACTGACTTCGCCCTTCCTCATTCTATCTTCGAGTCGAGTTCGGGGTCAGAGTTCCA 1140
consensus_10068#2      GGAAACTGACTTCGCCCTTCCTCATTCTATCTTCGAGTCGAGTTCGGGGTCAGAGTTCCA 294
consensus_10068#1      GGAAACTGACTTCGCCCTTCCTCCTTCTATTTTCGAGTCGAGTTCGGGGTCAGAGTTCCC 294
                       *********************** ****** **************************** 

consensus_10068#0      ACAATGTTCCATGTCCTACTCAGGTCATTAGCATCTGGTGATACTCCTCACAGCATCTTC 1200
consensus_10068#2      ACAATGTTCCATGTCCTACTCAGGTCATTAGCATCTGGTGATACTCCTCACAGCATCTTC 354
consensus_10068#1      CCAATGTTCCCTGTCCTACTCAGGTCCTTAGCATCTGGTGATACTCCTCCCAGCATTTTC 354
                        ********* *************** ********************** ****** ***

consensus_10068#0      GCTAGCTTGTTCGAGACGAAGTAATGATCTAAGATCCGTGTTGTAGCTCTCAGTAGTATA 1260
consensus_10068#2      GCTAGCTTGTTCGAGACGAAGTAATGATCTAAGATCCGTGTTGTAGCTCTCAGTAGTATA 414
consensus_10068#1      GCTAGCTTGTTCGAGACGAAGTAATGATTTAAGATCCCTGTTGTAGCTCCCCGTAGTATA 414
                       **************************** ******** *********** * ********

consensus_10068#0      TTTCTAAGTCCCAATGGAGATGTTGGTAGACAAAAATGTTGTAGGTGTTCAGATGATTGT 1320
consensus_10068#2      TTTCTAAGTCCCAATGGAGATGTTGGTAGACAAAAATGTTGTAGGTGTTCAGATGATTGT 474
consensus_10068#1      TTTTTAAGTCCCCAAGGAGATGTTGGTAGCCAAAAATGTTGTAGATGTTCAGATGATTGT 474
                       *** ******** * ************** ************** ***************

consensus_10068#0      TTACATGATACTACATATGACAGCTATTTAAGCTTGTAATTTCGTGGCCTGTAAATTTTA 1380
consensus_10068#2      TTACATGATACTACATATGACAGCTATTTAAGCTTGTAATTTCGTNNNCTGTANNNNNNN 534
consensus_10068#1      TTCCCTGATACTCCCTATGGCAGCTATTTAAGCTTGTAATTTCGTGGCCCGTAAATTTTA 534
                       ** * ******* * **** *************************   * ***       

consensus_10068#0      TTATCAGCTGTTGAGTTGGGAAGTTTGAAGGTTGCGCTTTGTCGCGGCGTCGACTTCTGC 1440
consensus_10068#2      NNNNCAG----------------------------------------------------- 541
consensus_10068#1      TTATCACCTGTTGAGTTGGGAAGTTTTAAGGTTGCCCTTTGTCCCGGCGTCGACTTTTGC 594
                           **                                                      

consensus_10068#0      TCATCTGGGTAAATCTTTATTGACAAAAGTGTTTAACATGAACAATTTTTCGCGTGTAAT 1500
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      TCATCTGGGTAAATCTTTATTGCCCAAAGTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAA 654
                                                                                   

consensus_10068#0      TTGTTGTAAACTTGTAATGGTCAGTGGTCAGAAGCACAAGCTGTTGATGTTATGCTGTTA 1560
consensus_10068#2      ------------------------------------------------------------
consensus_10068#1      AAAAAAAAA--------------------------------------------------- 663
                                                                                   

consensus_10068#0      CACTTGGATGTTACTATCATGGTT 1584
consensus_10068#2      ------------------------
consensus_10068#1      ------------------------
                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)