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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1145 fasta sequence
[TTTTTTAGCGAACAAAAGCGATTTATTTACATACGTACAATCGTATATACAATCTATACTAATTTTTCAGGAGATATGCAAGCTACACTGACAAATTACATGTTTAAACCTAACGATTATTCTCTGAATCATTAGTTCGGTGTACACTTGCTAGCAGCTACTTCTTTCTATACTGCAATCTAGCC-TGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATCT-TGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCT-ACTAAAACTGGCTTTGCACTAGTCAAGTCCACATTGCCACTGCCACCGGCGACAGATGATTCCGCTTCGACAGATCCAGCTCTCGAATCTGACATCCTGGAGGC-GATAGCCCAC-GCCATCAA-TGGAGGAAGAACGCCAT-ACAAGATGGTCATGCAGTAACCGCCTGCA-ATGTCAGTAGCAATGGAGAATGAATTCGGAACGGTAGCTGCAATTAGCACGGTTGGGGCAACCACAGCCCCTGCAGCGATGTAGCTGAGCCTGTTGTTGTCCACAGCCGTTTTCGCTCCACGATGCCTTAATGCTTCTTCTTCATGTCCTTGGGCTGAAGAAGAGACAAGATTGGTCATCTGCTCAATGAAGAACTGTGAAGCTCCCAGCAGTGTTCCGAT-CAGCGACGTCCCGACAGCAAGGAGTGAGAACGTCTCCACAACAGTATAACTCCATTCTGTATTAAGCATA-TCCAGGATGTCAAACCCATCAAGATCCGTGGAGATGCTGAGCGCGATGTCGTCCCACACGAGCAAGGACAGCAATGGCACGATGCTCCCGACGAGTATCGAGAGCCGAATCCTCACGAGGTCCCCTCCAAGGTACGCGCATATCACTGGTGCGATATCATGGAAGACCAGCGTGAAGATGATCACCGGAAGCGTTGCAGGGACCTGCTCCCAGTTGGTGTTAGCTGGCAGGGTCAGGCCGGCACCGAATGCTACTGCAGACACCTCGATCGTCAGCAGTAATCCTATCATGACGAAAGTGAGCAGCTGGTTCACTTTGTCGGTGACGCCCGTGCCACCGGCGGCGATGAGGAGCGCAAGGGCGGCGGTGAAGGCGCAGCCGGAGACGGGCTCGGGAACGCCGGCGACCACGCT]
[-] EMBL BM421787 [TTTTTTAGCGAACAAAAGCGATTTATTTACATACGTACAATCGTATATACAATCTATACTAATTTTTCAGGAGATATGCAAGCTACACTGACAAATTACATGTTTAAACCTAACGATTATTCTCTGAATCATTAGTTCGGTGTACACTTGCTAGCAGCTACTTCTTTCTATACTGCAATCTAGCCGTGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATC TGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCT ACTAAAACTGGCTTTGCACTAGTCAAGTCCACATTGCCACTGCCACCGGCGACAGATGATTCCGCTTCGACAGATCCAGCTCTCGAATCTGACATCCTGGAGGC GATAGCCCAC GCCATCAA TGGAGGAAGAACGCCAT ACAAGATGGTCATGCAGTAACCGCCTGCA ATGTCAGTAGCAATGGAGAATGAATTCGGAACGGTAGCTGCAATTAGCACGGTTGGGGCAA CACAG CCCTGCAGCGATGTAGCTGAGCCTGTTGTTGTCCACAGNCG TTTCGCTCCACGATGCCTTAATG ]
[+] EMBL CB624264 [ CGAACAAAAGCGATTTATTTACATACGTACCCTCGTATATACAATCTATACTAATTTTTCAGGAGATATGCAAGCTACACTGACAAATTACATGTTTAAACCTAACGATTATTCTCTGAATCATTAGTTC GTGTACACTTGCTAGCAGCTACTTCTTTCTATACTGCAATCTAGCC TGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATCT TGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCT ACTAAAACTGGCTTTGCACTAGTCAAGTCCACATTGCCACTGCCACCGGCGACAGATGATTCCGCTTCGACAGATCCAGCTCTCGAATCTGACATCCTGGAGGC GATAGCCCAC GCCATCAA TGGAGGAAGAACGCCAT ACAAGATGGTCATGCAGTAACCGCCTGCA ATGTCAGTAGCAATGGAGAATGAATTCGGAACGGTAGCTGCAATTAGCACGGTTGGGGCAACCACAGCCCCTGCAGCGATGTAGCTGAGCCTGTTGTTGTCCACAGCCGTTTTCGCTCCACGATGCCTTAATGCTTCTTCTTCATGTCCTTGGGCTGAAGAAGAGACAAGATTGGTCATCTGCTCAATGAAGAACTGTGAAGCTCCCAGCAGTGTTCCTAT CAGCGACGTCCCGACAGCAAGGAGTGAGAACGTCTCCACAACAGTATAACTCCATTCTGTATTAAGCATA TCCAGGATGTCAAACCCATCAAGATCCGTGGAGATGCTGAGCGCGATGTCGTCCCACACGAGCAAG ]
[-] EMBL BI807495 [ ttttttttTTACATGTTTAAACCTAACGATTATTCTCTGAATCATTAGTTCTGTGTACACTTGCTAGCAGCTACTTCTTTCTATACTGGAATCTAGCC GGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATCTGTGGGACATTTGCTCAAAGACCATGAGCACAGAGAA AACCCCATCCCT ACTAAAACGGGCTTTGCACTAGTCAAGTCCACATTGGCACTGCCACCGG GACAGATGATTCCG TTCGA AGATCCAG TCTCGAATCTGACATCCTGGAGGCGGATAGCCCACAGCCATCAAGTGGAGGAAGAACGCCATAACAAGATGGTCATGCAGTAACCGCCTGCACTTGTCAGTAGCAATGGAGAATGAATTCGGAACGGTAGCTGCAATTAGCACGGTGGGGGC ACCACAGCCCCTGCAGCGATGTAGCTGAGCCTGT ]
[-] EMBL AU057472 [ TGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCTAACTAAAACTGGCTTTGCACTAGTCAAGTCCACATTGCCACTGCCACCGGCGACAGATGATTCCGCTTCGACAGATCCAGCTCTCGAATCTGACATCCTGGAGGC GATAGCCCAC GCCATCAA TGGAGGAAGAACGCCAT ACAAGATGGTCATGCAGTAACCGCCTGCA ATGTCAGTAGCAATGGAGAATGAATTCGGAACGGTAGCTGCAATTAGCACGGTTGGGGCAACCACAGCCCCTGCAGCGATGTAGCTGAGCCTGTTGTTGTCCACAGCCGTTTTCGCTCCACGATGCCTTAATGCTTCTTCTTCATGTCCTTGGGCTGAAGAAGAGACAAGATTGGTCATCTGCTCAATGAAGAACTGTGAAGCTCCCAGCAGTGTTCCGAT CAGCGACGTCCCGACAG ]
[-] EMBL AU056599 [ CCACGATGCCTTAATGCTTCTTCTTCATGTCCTTGGGCTGAAGAAGAGACAAGATTGGTCATCTGCTCAATGAAGAACTGTGAAGCTCCCAGCAGTGTTCCGATCCAGCGACGTCCCGACAGCAAGGAGTGAGAACGTCTCCACAACAGTATAACTCCATTCTGTATTAAGCATATTCCAGGATGTCAAACCCATCAAGATCCGTGGAGATGCTGAGCGCGATGTCGTCCCACACGAGCAAGGACAGCAATGGCACGATGCTCCCGACGAGTATCGAGAGCCGAATCCTCACGAGGTCCCCTCCAAGGTACGCGCATATCACTGGTGCGATATCATGGAAGACCAGCGTGAAGATGATCACCGGAAGCGTTGCAGGGACCTGCTCCCAGTTGGTGTTAGCTGGCAGGGTCAGGCCGGCACCGAATGCTACTGCAGACACCTCGATCGTCAGCAGTAATCCTATCATGACGAAAGTGAGCAGCTGGTTCACTTTGTCGGTGACGCCCGTGCCACCGGCGGCGATGAGGAGCGCAAGGGCGGCGGTGAAGGCGCAGCCGGAGACGGGCTCGGGAACGCCGGCGACCACGCT]
consensusID : consensus_10076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[AGAGAAGCAGATTGCAGGTGAACCTGTACACAACGTGTTCTTGCTAGTGCAGTAGTGCTACAGCGGAGACGCTCACTCTGTATTAAGCATATCCAGGATGTCAAACCCATCAAGATCCGTGGAGATGCTGAGCGCGATGTCGTCCCACACGAGCAAGGACAGCAATGGCACGATGCTCCCGACGAGTATCGAGAGCCGAATCCTCACGAGGTCCCCTCCAAGCGTGAAGATGATCACCGGAAGCGTTGCAGGGACCTGCTCCCAGTTGGTGTTAGCTGGCAGGGTCAGGCCGGCACCGAATGCTACTGCAGACACCTCGATCGTCAGCAGTAATCCTGCATCAGTAGACAGATCCCGATGGTAGTTAGTACTTAGTACTAGTGCGCAAGACAGATCATGTTGATGACAGCAAGAACCTGAGGTGTATGGATGTAATATGGTTATCAGCTACAGTAGGTTTGCTCTTACTTCAGCACAGTGCATTGTGTTGCAAGTAGTATGGAGCTCCCAGTGGGGAGAGTGGGTGTTTGTTCGTCATTGTCTCTACACTTTCAGAAATGAGTTACTACTCCACTACATGCCATCTTTGAATTCCAGTTGGGCGAACCAGTGTTTGTTCATCTCTGTTTTCCCAATTTCAGAAACGAGTTACTGTTCCAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762382 [AGAGAAGCAGATTGCAGGTGAACCTGTACACAACGTGTTCTTGCTAGTGCAGTAGTGCTACAGCGGAGACGCTCACTCTGTATTAAGCATATCCAGGATGTCAAACCCATCAAGATCCGTGGAGATGCTGAGCGCGATGTCGTCCCACACGAGCAAGGACAGCAATGGCACGATGCTCCCGACGAGTATCGAGAGCCGAATCCTCACGAGGTCCCCTCCAAGCGTGAAGATGATCACCGGAAGCGTTGCAGGGACCTGCTCCCAGTTGGTGTTAGCTGGCAGGGTCAGGCCGGCACCGAATGCTACTGCAGACACCTCGATCGTCAGCAGTAATCCTGCATCAGTAGACAGATCCCGATGGTAGTTAGTACTTAGTACTAGTGCGCAAGACAGATCATGTTGATGACAGCAAGAACCTGAGGTGTATGGATGTAATATGGTTATCAGCTACAGTAGGTTTGCTCTTACTTCAGCACAGTGCATTGTGTTGCAAGTAGTATGGAGCTCCCAGTGGGGAGAGTGGGTGTTTGTTCGTCATTGTCTCTACACTTTCAGAAATGAGTTACTACTCCACTACATGCCATCTTTGAATTCCAGTTGGGCGAACCAGTGTTTGTTCATCTCTGTTTTCCCAATTTCAGAAACGAGTTACTGTTCCAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10076#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence
[TTTTTTTTTTTTTTTAAACCTAACGATTATTCTCTGAATCATTAGTTCGTGTACACTTGCTAGCAGCTACTTCTTTCTATACTGCAATCTAGCCTGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATCTTGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCTACTAAAACTGGCTTTGCACTAGTCAAGTCCACATTGCCACTGCCACCGGCGACAGATGATTCCGCTTCGACAGATCCAGCTCTCGAATCTGACATCCTGGAGGCGATAGCCACGCCATCAATGGAGGAAGAACGCCATACAAGATGGTCATGCAGTAACCGCCTGCAATGTCAGTAGCAATGGAGAATGAATTCGGAACGGTAGCTGCAATTAGCACGGTTGGGGCAACCACAGCCCCTGCAGCGATTTTAGCTGAGCCTGTTGTTGTCCA]
[-] EMBL AU057473 [TTTTTTTTTTTTTTTAAACCTAACGATTATTCTCTGAATCATTAGTTCGTGTACACTTGCTAGCAGCTACTTCTTTCTATACTGCAATCTAGCCTGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATCTTGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCTACTAAAACTGGCTTTGCACTAGTCAAGTCCACATTGCCACTGCCACCGGCGACAGATGATTCCGCTTCGACAGATCCAGCTCTCGAATCTGACATCCTGGAGGCGATAGCCACGCCATCAATGGAGGAAGAACGCCATACAAGATGGTCATGCAGTAACCGCCTGCAATGTCAGTAGCAATGGAGAATGAATTCGGAACGGTAGCTGCAATTAGCACGGTTGGGGCAACCACAGCCCCTGCAGCGATTTTAGCTGAGCCTGTTGTTGTCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10076#0 TTTTTTAGCGAACAAAAGCGATTTATTTACATACGTACAATCGTATATACAATCTATACT 60
consensus_10076#2 ------------------------------------------------------------
consensus_10076#1 ---------------------AGAGAAGCAGATTGCAGGTGAACCTGTACACAACGTGTT 39
consensus_10076#0 AATTTTTCAGGAGATATGCAAGCTACACTGACAAATTACATGTTTAAACCTAACGATTAT 120
consensus_10076#2 ------------------------------TTTTTTTTTTTTTTTAAACCTAACGATTAT 30
consensus_10076#1 CTTGCTAGTGCAGTAGTGCTACAGCGGAGACGCTCACTCTGTATTAAGCATATCCAGGAT 99
**** * ** * * **
consensus_10076#0 TCTCTGAATCATTAGTTCGGTGTACACTTGCTAGCAGCTACTTCTTTCTATACT------ 174
consensus_10076#2 TCTCTGAATCATTAGTTCG-TGTACACTTGCTAGCAGCTACTTCTTTCTATACT------ 83
consensus_10076#1 G-TCAAACCCATCAAGATC-CGTGGAGATGCTGAGCGCGATGTCGTCCCACACGAGCAAG 157
** * *** * ** * **** ** * ** * * * **
consensus_10076#0 ----GCAAT--CTAGCCTGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATC---T 225
consensus_10076#2 ----GCAAT--CTAGCCTGTCCATGCAAGGAGATAGGACTGAAAACTAACGAAATC---T 134
consensus_10076#1 GACAGCAATGGCACGATGCTCCCGACGAGTATCGAGAGCCGAATCCTCACGAGGTCCCCT 217
***** * * *** * ** * ** * *** ** **** ** *
consensus_10076#0 TGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCTACTAAAACTGGC 285
consensus_10076#2 TGGGACATTTGCTCAAAGACCATGAGCACAGAGAACACCCCCATCCCTACTAAAACTGGC 194
consensus_10076#1 CCAAGCGTGAAGATGATCACCGGAAGCGTTGCAGGGACCTGC-TCCCAGTTGGTGTTAGC 276
* * * *** *** * *** * **** * * **
consensus_10076#0 T--TTGCACTAGTCAAGTCCACATTGCCACTGC---CACC---GGCGACAG--ATGATTC 335
consensus_10076#2 T--TTGCACTAGTCAAGTCCACATTGCCACTGC---CACC---GGCGACAG--ATGATTC 244
consensus_10076#1 TGGCAGGGTCAGGCCGGCACCGAATGCTACTGCAGACACCTCGATCGTCAGCAGTAATCC 336
* * ** * * * * *** ***** **** ** *** * ** *
consensus_10076#0 CGCTTC----GACAGATCCAGCT-----CTCGAATCTGACATCC-TGGAGGCGATAGCCC 385
consensus_10076#2 CGCTTC----GACAGATCCAGCT-----CTCGAATCTGACATCC-TGGAGGCGATAGCC- 293
consensus_10076#1 TGCATCAGTAGACAGATCCCGATGGTAGTTAGTACTTAGTACTAGTGCGCAAGACAGATC 396
** ** ********* * * * * * * * ** ** **
consensus_10076#0 ACGCCATCAATGGAGGAAGAACGCCATACAAGATGGTCATGCAGTAACCGCCTGCAAT-- 443
consensus_10076#2 ACGCCATCAATGGAGGAAGAACGCCATACAAGATGGTCATGCAGTAACCGCCTGCAAT-- 351
consensus_10076#1 ATGTTGATGACAGCAAGAACCTGAGGTGTATGGATGTAATATGGTTATCAGCTACAGTAG 456
* * * * * * * * * ** ** ** * * ** ** *
consensus_10076#0 GTCAGT---------AGCAATGGAGAATGAATTCGGAACGGTA----GCTGCAATTAGCA 490
consensus_10076#2 GTCAGT---------AGCAATGGAGAATGAATTCGGAACGGTA----GCTGCAATTAGCA 398
consensus_10076#1 GTTTGCTCTTACTTCAGCACAGTGCATTGTGTTGCAAGTAGTATGGAGCTCCCAGTGGGG 516
** * **** * * ** ** * *** *** * * * *
consensus_10076#0 CGGTTGGGG------CAACCACAGCCCCTGCAGCGATGT-AGCTGAGCCTGTTGTTGTCC 543
consensus_10076#2 CGGTTGGGG------CAACCACAGCCCCTGCAGCGATTTTAGCTGAGCCTGTTGTTGTCC 452
consensus_10076#1 AGAGTGGGTGTTTGTTCGTCATTGTCTCTACA-CTTTCAGAAATGAGTTACTACTCCACT 575
* **** ** * * ** ** * * * **** * * *
consensus_10076#0 ACAGCCGTTTTCGCTCCACGATGCCTTAATGCTTCTTCTTCATGTCCTTGGGCTGAAGAA 603
consensus_10076#2 A----------------------------------------------------------- 453
consensus_10076#1 ACATGCCATCTTTGAATTCCAGTTGGGCGAACCAGTGTTTGTTCATCTCTGTTTTCCCAA 635
*
consensus_10076#0 GAGACAAGATTGGTCATCTGCTCAATGAAGAACTGTGAAGCTCCCAGCAGTGTTCCGATC 663
consensus_10076#2 ------------------------------------------------------------
consensus_10076#1 TTTCAGAAACGAGTTACTGTTCCAAAAAAAAAAAAAAAAAA------------------- 676
consensus_10076#0 AGCGACGTCCCGACAGCAAGGAGTGAGAACGTCTCCACAACAGTATAACTCCATTCTGTA 723
consensus_10076#2 ------------------------------------------------------------
consensus_10076#1 ------------------------------------------------------------
consensus_10076#0 TTAAGCATATCCAGGATGTCAAACCCATCAAGATCCGTGGAGATGCTGAGCGCGATGTCG 783
consensus_10076#2 ------------------------------------------------------------
consensus_10076#1 ------------------------------------------------------------
consensus_10076#0 TCCCACACGAGCAAGGACAGCAATGGCACGATGCTCCCGACGAGTATCGAGAGCCGAATC 843
consensus_10076#2 ------------------------------------------------------------
consensus_10076#1 ------------------------------------------------------------
consensus_10076#0 CTCACGAGGTCCCCTCCAAGGTACGCGCATATCACTGGTGCGATATCATGGAAGACCAGC 903
consensus_10076#2 ------------------------------------------------------------
consensus_10076#1 ------------------------------------------------------------
consensus_10076#0 GTGAAGATGATCACCGGAAGCGTTGCAGGGACCTGCTCCCAGTTGGTGTTAGCTGGCAGG 963
consensus_10076#2 ------------------------------------------------------------
consensus_10076#1 ------------------------------------------------------------
consensus_10076#0 GTCAGGCCGGCACCGAATGCTACTGCAGACACCTCGATCGTCAGCAGTAATCCTATCATG 1023
consensus_10076#2 ------------------------------------------------------------
consensus_10076#1 ------------------------------------------------------------
consensus_10076#0 ACGAAAGTGAGCAGCTGGTTCACTTTGTCGGTGACGCCCGTGCCACCGGCGGCGATGAGG 1083
consensus_10076#2 ------------------------------------------------------------
consensus_10076#1 ------------------------------------------------------------
consensus_10076#0 AGCGCAAGGGCGGCGGTGAAGGCGCAGCCGGAGACGGGCTCGGGAACGCCGGCGACCACG 1143
consensus_10076#2 ------------------------------------------------------------
consensus_10076#1 ------------------------------------------------------------
consensus_10076#0 CT 1145
consensus_10076#2 --
consensus_10076#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||