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Oryza sativa
cluster # 10077 cluster # 10077       Sequences # 7       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10077#0 length = 2852 sequences # 5  
 consensus_10077#1 length = 585 sequences # 2  
consensusID : consensus_10077#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2852
fasta sequence 
                              [CTCTCCTCTCCTCTCCTCTCCTCGTATATTCCTCCATCTCCTCCTCCCGTCCCAATCTCCAATCTCCAACCCTCGCAATCCCAAATCCCAACCCGACCCCGACACAGATCCTCTCCGCTAATCCCAATTCCGCCGCCAAAATCCACCCTTGCGCTGTCCCCCCCTCGCCAATTCGATCTTGATTTTGATTTGAGAAAATCGCGTGTTCTTTTGGAGGGAAGAGAAGATTTGGGAGTTCTTTTGAAGGGGGGGGGGGTTGATGGTGGCGAGGATGTGGCCGTGGCCGCCTCCGGCGAGGAAGTTCCGTGTCAGGCTGGTGGTGCGGCGGGCGGAGGGGCTCACGGCGACGGCGACGGCGACGGCGAGCTCGTCGCCGGTGGCGGAGGCGAAGGTGGCGGTGGAGGTGAGGTGGAAGGGGCCCAAGGCGTCGCCGCTGGGGTCGCTGCGGCGGGTGATGCACAGCAACCGGACGCGGCTGGAGTCGGCGGCGGAGGCGGCGGTGGCGTGGGAGGAGGAGTTCGAGAGGGTGGAGACGTTCACGGCGACGTCGCACCGCAAGTCCGGCGCCGCCTTCCACCCGTGGGACCTCGCCTTCTCCGTCTTCGTCAATGATTCAAATAAAGGGCCAAAGGGTGAATTGATTCTGGGTACCGCTTCACTGAACCTAGCAGAGTACACATCTGCTTCTGAAGAAGTCGAGATAATCCTCCCATTGTCGGTGCCAAACGGTTCATCCGAGTCTTCCCCATCACTTCATCTCACTTTGAGCCTGGTGGAATTAGGACCTCCTCACCAATCACCTGATGCTTCACAGCGTTCTGCTGTTACCGCT-CATTGTCACCTTCCAGTGGTGACTCTGTTCCTTCCAGCAAAGATGAGGTTTCTTCTGTCATTAAAGCGGGGCTGAGAAATCTAAAAATTCTCACAGATCTAGTGTCGACACGGAGGTCCAAAAAGACTAACCGAGATGATGATGGCAGTGAGGATAAGTGCTATGTTCACAGTGATGGTGCTGAATACCCTTCTGATACTGACTCCCTCGACGAAGATCTAGATGATAGAGAGCGGGATGATGGCTTAGGGGGTTCAACTGTCAGGAAATCCTTCAGCTATGGTTCCTTGCAGTCTGTGAATTATGCCGGTGGCCTACTTTATGCACATGCAAGGATTGATGGAGAGCATGAGGACTGGATATACTACAGTCACCGGAAATCTGAAGCGGGTTATTCTGTAGAGCAAGAGGCCTCATCCACTGCTGAAGAACCTGTGGTTTCAGTATCGCGGAGGAGTCTGCTTCCCTGGAAGAAGAAGAGGAAATTGAATTTACGGTTATTGAAGGTACTGAAGAATAAAGGGGAACCTTTACTGAAGAAGGGGAATGACGAAGAGGGAGGTGATGACATTGACTACGATCGGCGATTATTGACCACTTCTGACGGAAATGCTTTAGAGGGATCAGATAGCTCCATCAATAGTATGGTGTCAATATTTGGTGATGATAATTTTGTAGTTGGGAATTGGGAGTCAAAGGAAGTACTTAGTCGTGATGGCCACCTGAGGTTGTCTACCCAGGTGTTCTTTGCATCAATTGACCAGAGAAGCGAACGAGCTGCAGGGGAGAGTGCCTGTACAGCACTTGTAGCTGTCATTGCAGATTGGTTTGAAGCAAACCAGGATCTGATGCCAATCCGCTCGCAGTTTGATAGCCTTATCCGAGAAGGGTCTCTGGAATGGAGGAAACTCTGTGAGAACGAGACATACAGAGAGCGATTTCCTGACAAGCACTTTGATCTTGAAACTGTCCTTCATGCCAAGATCCGCCCACTCACAGTTTCCCCCAACAGGTCATTCATTGGGTTCTTCCAGCCTGAAAGTACTGAGGATGGAAGTGGATTCGATTTCCTTGATGGAGCAATGTCATTTGACAACATATGGGATGAGATTAGCCGAGCAGCAGAGTGCTCCACTGGAAAACCTACTCTATATATTGTCAGCTGGAATGACCATTTCTTCGTCCTCAAGGTTGAGGCTGGCGCATATTACATTATCGATACACTTGGTGAGAGGCTGTATGAAGGTTGCAGCCAAGCTTACATCTTGAAGTTTGACGACAACACTACAATTCACAAAGTACCTGCTGAAAAGAAAGAAGCCAACCCTGATTCCAGCGGGCGGTTGAAGGATTCGTCAGATAGCTCATCAACTGATCAGGACAGCGGAACTGACACTGAAGAGTGCGAGCTCGT-GTCGAAGGGTAAAGAATCATGCAAAGAGTACATCAAGAGCTTCTTGGCTGCCATCCCGATCCGCGAGCTGCAGGCCGACATCAAGAAGGGTATCATAGCATCGACGCCACTGCACCACCGTCTCCAGATCGAGTTCCATTACACCGAATCATGCCCCGAGGAGATCCCGCTGCCTGCTCCATTACCTGCCATTGAAGCTCCCTTTGAGTTCTCCTGGCCTGAGCCGCCTCCTGCCATGGAGGTTACCCTAGCACCCGCAGTCGCCGCCATATAACTCACCATGGAAGTGCCTGCCCTAATGTTTAACATATAGAGAGCCTCTTTTTCAGGGCGAATTGTGAAGTGAACCAGATCAAAGATTTGGCTTCGTTTCTAGTTTGCACTGTTTTTTTGCTGTCTAATTATGATGAACTGACTAGTATAGGTGA-CCCCCCCTCCCCCCCTTTGGTGTATGTTTTCTACTTTTCTTCACCTTCCCT-TCCAGGTTTTAGAGCTTTCATTTTGTAAAGAAAGAAAGGGTGTTTGCTCCTAGTTATCTTCACC-TGTGAAGTGGCTTGTGCTCAACTTGTAATCCTTGAACCATATCATTATGTTAATTAAGCCCTT]

[+] EMBL AK066151             [CTCTCCTCTCCTCTCCTCTCCTCGTATATTCCTCCATCTCCTCCTCCCGTCCCAATCTCCAATCTCCAACCCTCGCAATCCCAAATCCCAACCCGACCCCGACACAGATCCTCTCCGCTAATCCCAATTCCGCCGCCAAAATCCACCCTTGCGCTGTCCCCCCCTCGCCAATTCGATCTTGATTTTGATTTGAGAAAATCGCGTGTTCTTTTGGAGGGAAGAGAAGATTTGGGAGTTCTTTTGAAGGGGGGGGGGGTTGATGGTGGCGAGGATGTGGCCGTGGCCGCCTCCGGCGAGGAAGTTCCGTGTCAGGCTGGTGGTGCGGCGGGCGGAGGGGCTCACGGCGACGGCGACGGCGACGGCGAGCTCGTCGCCGGTGGCGGAGGCGAAGGTGGCGGTGGAGGTGAGGTGGAAGGGGCCCAAGGCGTCGCCGCTGGGGTCGCTGCGGCGGGTGATGCACAGCAACCGGACGCGGCTGGAGTCGGCGGCGGAGGCGGCGGTGGCGTGGGAGGAGGAGTTCGAGAGGGTGGAGACGTTCACGGCGACGTCGCACCGCAAGTCCGGCGCCGCCTTCCACCCGTGGGACCTCGCCTTCTCCGTCTTCGTCAATGATTCAAATAAAGGGCCAAAGGGTGAATTGATTCTGGGTACCGCTTCACTGAACCTAGCAGAGTACACATCTGCTTCTGAAGAAGTCGAGATAATCCTCCCATTGTCGGTGCCAAACGGTTCATCCGAGTCTTCCCCATCACTTCATCTCACTTTGAGCCTGGTGGAATTAGGACCTCCTCACCAATCACCTGATGCTTCACAGCGTTCTGCTGTTACCGCT CATTGTCACCTTCCAGTGGTGACTCTGTTCCTTCCAGCAAAGATGAGGTTTCTTCTGTCATTAAAGCGGGGCTGAGAAATCTAAAAATTCTCACAGATCTAGTGTCGACACGGAGGTCCAAAAAGACTAACCGAGATGATGATGGCAGTGAGGATAAGTGCTATGTTCACAGTGATGGTGCTGAATACCCTTCTGATACTGACTCCCTCGACGAAGATCTAGATGATAGAGAGCGGGATGATGGCTTAGGGGGTTCAACTGTCAGGAAATCCTTCAGCTATGGTTCCTTGCAGTCTGTGAATTATGCCGGTGGCCTACTTTATGCACATGCAAGGATTGATGGAGAGCATGAGGACTGGATATACTACAGTCACCGGAAATCTGAAGCGGGTTATTCTGTAGAGCAAGAGGCCTCATCCACTGCTGAAGAACCTGTGGTTTCAGTATCGCGGAGGAGTCTGCTTCCCTGGAAGAAGAAGAGGAAATTGAATTTACGGTTATTGAAGGTACTGAAGAATAAAGGGGAACCTTTACTGAAGAAGGGGAATGACGAAGAGGGAGGTGATGACATTGACTACGATCGGCGATTATTGACCACTTCTGACGGAAATGCTTTAGAGGGATCAGATAGCTCCATCAATAGTATGGTGTCAATATTTGGTGATGATAATTTTGTAGTTGGGAATTGGGAGTCAAAGGAAGTACTTAGTCGTGATGGCCACCTGAGGTTGTCTACCCAGGTGTTCTTTGCATCAATTGACCAGAGAAGCGAACGAGCTGCAGGGGAGAGTGCCTGTACAGCACTTGTAGCTGTCATTGCAGATTGGTTTGAAGCAAACCAGGATCTGATGCCAATCCGCTCGCAGTTTGATAGCCTTATCCGAGAAGGGTCTCTGGAATGGAGGAAACTCTGTGAGAACGAGACATACAGAGAGCGATTTCCTGACAAGCACTTTGATCTTGAAACTGTCCTTCATGCCAAGATCCGCCCACTCACAGTTTCCCCCAACAGGTCATTCATTGGGTTCTTCCAGCCTGAAAGTACTGAGGATGGAAGTGGATTCGATTTCCTTGATGGAGCAATGTCATTTGACAACATATGGGATGAGATTAGCCGAGCAGCAGAGTGCTCCACTGGAAAACCTACTCTATATATTGTCAGCTGGAATGACCATTTCTTCGTCCTCAAGGTTGAGGCTGGCGCATATTACATTATCGATACACTTGGTGAGAGGCTGTATGAAGGTTGCAGCCAAGCTTACATCTTGAAGTTTGACGACAACACTACAATTCACAAAGTACCTGCTGAAAAGAAAGAAGCCAACCCTGATTCCAGCGGGCGGTTGAAGGATTCGTCAGATAGCTCATCAACTGATCAGGACAGCGGAACTGACACTGAAGAGTGCGAGCTCGT GTCGAAGGGTAAAGAATCATGCAAAGAGTACATCAAGAGCTTCTTGGCTGCCATCCCGATCCGCGAGCTGCAGGCCGACATCAAGAAGGGTATCATAGCATCGACGCCACTGCACCACCGTCTCCAGATCGAGTTCCATTACACCGAATCATGCCCCGAGGAGATCCCGCTGCCTGCTCCATTACCTGCCATTGAAGCTCCCTTTGAGTTCTCCTGGCCTGAGCCGCCTCCTGCCATGGAGGTTACCCTAGCACCCGCAGTCGCCGCCATATAACTCACCATGGAAGTGCCTGCCCTAATGTTTAACATATAGAGAGCCTCTTTTTCAGGGCGAATTGTGAAGTGAACCAGATCAAAGATTTGGCTTCGTTTCTAGTTTGCACTGTTTTTTTGCTGTCTAATTATGATGAACTGACTAGTATAGGTGACCCCCCCCTCCCCCCCTTTGGTGTATGTTTTCTACTTTTCTTCACCTTCCCT TCCAGGTTTTAGAGCTTTCATTTTGTAAAGAAGGAAAGGGTGTTTGCTCCTAGTTATCTTCACC TGTGAAGTGGCTTGTGCTCAACTTGTAATCCTTGAACCATATCATTATGTTAATTAAGCCCTT]
[+] EMBL AK119567             [ TCTCCTCTCCTCTCCTCTCCTCGTATATTCCTCCATCTCCTCCTCCCGTCCCAATCTCCAATCTCCAACCCGCGCAATCCCAAATCCCAACCCGACCCCGACACAGATCCTCTCCGCTAATCCCAATTCCGCCGCCAAAATCCACCCTTGCGCTGTCCCCCCCTCGCCAATTCGATCTTGATTTTGATTTGAGAAAATCGCGTGTTCTTTTGGAGGGAAGAGAAGATTTGGGAGTTCTTTTGAAGGGGGGGGGGGTTGATGGTGGCGAGGATGTGGCCGTGGCCGCCTCCGGCGAGGAAGTTCCGTGTCAGGCTGGTGGTGCGGCGGGCGGAGGGGCTCACGGCGACGGCGACGGCGACGGCGAGCTCGTCGCCGGTGGCGGAGGCGAAGGTGGCGGTGGAGGTGAGGTGGAAGGGGCCCAAGGCGTCGCCGCTGGGGTCGCTGCGGCGGGTGATGCACAGCAACCGGACGCGGCTGGAGTCGGCGGCGGAGGCGGCGGTGGCGTGGGAGGAGGAGTTCGAGAGGGTGGAGACGTTCACGGCGACGTCGCACCGCAAGTCCGGCGCCGCCTTCCACCCGTGGGACCTCGCCTTCTCCGTCTTCGTCAATGATTCAAATAAAGGGCCAAAGGGTGAATTGATTCTGGGTACCGCTTCACTGAACCTAGCAGAGTACACATCTGCTTCTGAAGAAGTCGAGATAATCCTCCCATTGTCGGTGCCAAACGGTTCATCCGAGTCTTCCCCATCACTTCATCTCACTTTGAGCCTGGTGGAATTAGGACCTCCTCACCAATCACCTGATGCTTCACAGCGTTCTGCTGTTACCGCTCCATTGTCACCTTCCAGTGGTGACTCTGTTCCTTCCAGCAAAGATGAGGTTTCTTCTGTCATTAAAGCGGGGCTGAGAAATCTAAAAATTCTCACAGATCTAGTGTCGACACGGAGGTCCAAAAAGACTAACCGAGATGATGATGGCAGTGAGGATAAGTGCTATGTTCACAGTGATGGTGCTGAATACCCTTCTGATACTGACTCCCTCGACGAAGATCTAGATGATAGAGAGCGGGATGATGGCTTAGGGGGTTCAACTGTCAGGAAATCCTTCAGCTATGGTTCCTTGCAGTCTGTGAATTATGCCGGTGGCCTACTTTATGCACATGCAAGGATTGATGGAGAGCATGAGGACTGGATATACTACAGTCACCGGAAATCTGAAGCGGGTTATTCTGTAGAGCAAGAGGCCTCATCCACTGCTGAAGAACCTGTGGTTTCAGTATCGCGGAGGAGTCTGCTTCCCTGGAAGAAGAAGAGGAAATTGAATTTACGGTTATTGAAGGTACTGAAGAATAAAGGGGAACCTTTACTGAAGAAGGGGAATGACGAAGAGGGAGGTGATGACATTGACTACGATCGGCGATTATTGACCACTTCTGACGGAAATGCTTTAGAGGGTTCAGATAGCTCCATCAATAGTATGGTGTCAATATTTGGTGATGATAATTTTGTAGTTGGGAATTGGGAGTCAAAGGAAGTACTTAGTCGTGATGGCCACCTGAGGTTGTCTACCCAGGTGTTCTTTGCATCAATTGACCAGAGAAGCGAACGAGCTGCAGGGGAGAGTGCCTGTACAGCACTTGTAGCTGTCATTGCAGATTGGTTTGAAGCAAACCAGGATCTGATGCCAATCCGCTCGCAGTTTGATAGCCTTATCCGAGAAGGGTCTCTGGAATGGAGGAAACTCTGTGAGAACGAGACATACAGAGAGCGATTTCCTGACAAGCACTTTGATCTTGAAACTGTCCTTCATGCCAAGATCCGCCCACTCACAGTTTCCCCCAACAGGTCATTCATTGGGTTCTTCCAGCCTGAAAGTACTGAGGATGGAAGTGGATTCGATTTCCTTGATGGAGCAATGTCATTTGACAACATATGGGATGAGATTAGCCGAGCAGCAGAGTGCTCCACTGAAAAACCTACTCTATATATTGTCAGCTGGAATGACCATTTCTTCGTCCTCAAGGTTGAGGCTGGCGCATATTACATTATCGATACACTTGGTGAGAGGCTGTATGAAGGTTGCAGCCAAGCTTACATCTTGAAGTTTGACGACAACACTACAATTCACAAAGTACCTGCTGAAAAGAAAGAAGCCAACCCTGATTCCAGCGGGCGGTTGAAGGATTCGTCAGATAGCTCATCAACTGATCAGGACAGCGGAACTGACACTGAAGAGTGCGAGCTCGT GTCGAAGGGTAAAGAATCATGCAAAGAGTACATCAAGAGCTTCTTGGCTGCCATCCCGATCCGCGAGCTGCAGGCCGACATCAAGAAGGGTATCATAGCATCGACGCCACTGCACCACCGTCTCCAGATCGAGTTCCATTACACCGAATCATGCCCCGAGGAGATCCCGCTGCCTGCTCCATTACCTGCCATTGAAGCTCCCTTTGAGTTCTCCTGGCCTGAGCCGCCTCCTGCCATGGAGGTTACCCTAGCACCCGCAGTCGCCGCCATATAACTCACCATGGAAGTGCCTGCCCTAATGTTTAACATATAGAGAGCCTCTTTTTCAGGGCGAATTGTGAAGTGAACCAGATCAAAGATTTGGCTTCGTTTCTAGTTTGCACTGTTTTTTTGCTGTCTAATTATGATGAACTGACTAGCATAGGTGA CCCCCCCTCCCCCCCTTTGGTGTATGTTTTCTACTTTTCTTCACCTTCCCT TCCAGGTTTTAGAGCTTTCATTTTGTAAAGAAAGAAAGGGTGTTTGCTCCTAGTTATCTTCACC TGTGAAGTGGCTTGTGCTCAACTTGTAATCCTTGAACCATATCATTATGTTAATTAAGCCCTT]
[+] EMBL C72837               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTACTCTATATATTGTCAGCTGGAATGACCATTTCTTCGTCCTCAAGGTTGAGGCTGGCGCATATTACATTATCGATACACTTGGTGAGAGGCTGTATGAAGGTTGCAGCCAAGCTTACATCTTGAAGTTTGACGACAACACTACAATTCACAAAGTACCTGCTGAAAAGAAAGAAGCCAACCCTGATTCCAGCGGGCGGTTGAAGGATTCGTCAGATAGCTCATCAACTGATCAGGACAGCGGAACTGACACTGAAGAGTGCGAGCTCGTGGTCGAAGGGTAAAGAATCATGCAAAGAGTACATCAAGAGCTTCTTGGCTGCCATCCCGATCCGCGAGCTGCAGGNCGACATCAAGAAGGGTATCATAGCATCGACGCCACTGCACCACCGTCTCCAGATCGAGTTCCATTACACCGNATCATGNCCCGAGGAGATCCgg                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB631657             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCTGTATGAAGGTTGCAGCCAAGCTTACATCTTGAAGTCTGACGACAACACTACAATTCACAAAGTACCTGCTGAAAAGAAAGAAGCCAACCCTGATTCCAGCGGGCGGTTGAAGGATTCGTCAGATAGCTCATCAACTGATCAGGACAGCGGAACTGACACTGAAGAGTGCGAGCTCGT GTCGAAGGGTAAAGAATCATGCAAAGAGTACATCAAGAGCTTCTTGGCTGCCATCCCGATCCGCGAGCTGCAGGCCGACATCAAGAAGGGTATCATAGCATCGACGCCACTGCACCACCGTCTCCAGATCGAGTTCCATTACACCGAATCATGCCCCGAGGAGATCCCGCTGCTTGCTCCATTACGTGCCATTGAAGCTCCCTTTGAGTTCTCCTGGCATGAGCCGCCTCCTGCCATGGAGGTTACCTTAGCACCCGCAGTCGCCGCCATATAACTCACCATGGAAGTGCCTGCCGTAATGTTTAACATATAGAGAGCCTCTTTTTCAGGGCGAATTGTGAAGTGAACCAGATCAAAGATTTGGCTTCGTTTTTAGTTTGCACTGTTCTTTTGCTGTCTAATTATGATGAACTGACTAGTATAGGTGA CCCCCCCTCCCCCCCTTTGGTGTATGTTTTCTACTTTTCTTCACCTTCCGTGTGCAGGTTTTAGAGCTTTCATTTTGTAAAGAAAGAAAGGGTGTTTGCTCCTAGTTATCTTCACCNTGTGAAAAGGCTT                                                  ]
[+] EMBL AU197290             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTTTTCAGGGCGAATTGTGAAGTGAACCAGATCAAAGATTTGGCTTCGTTTCTAGTTTGCACTGTTTTTTTGCTGTCTAATTATGATGAACTGACTAGTATAGGTGA CCCCCCCTCCCCCCCTTTGGTGTATGTTTTCTACTTTTCTTCACCTTCCCT TCCAGGTTTTAGAGCTTTCATTTTGTAAAGAAAGAAAGGGTGTTTGCTCCTAGTTATCTTCACC TGTGAAGTGGCTTGTGCTCAAaaaa                                      ]




>consensus_10077#0
CTCTCCTCTCCTCTCCTCTCCTCGTATATTCCTCCATCTCCTCCTCCCGTCCCAATCTCC
AATCTCCAACCCTCGCAATCCCAAATCCCAACCCGACCCCGACACAGATCCTCTCCGCTA
ATCCCAATTCCGCCGCCAAAATCCACCCTTGCGCTGTCCCCCCCTCGCCAATTCGATCTT
GATTTTGATTTGAGAAAATCGCGTGTTCTTTTGGAGGGAAGAGAAGATTTGGGAGTTCTT
TTGAAGGGGGGGGGGGTTGATGGTGGCGAGGATGTGGCCGTGGCCGCCTCCGGCGAGGAA
GTTCCGTGTCAGGCTGGTGGTGCGGCGGGCGGAGGGGCTCACGGCGACGGCGACGGCGAC
GGCGAGCTCGTCGCCGGTGGCGGAGGCGAAGGTGGCGGTGGAGGTGAGGTGGAAGGGGCC
CAAGGCGTCGCCGCTGGGGTCGCTGCGGCGGGTGATGCACAGCAACCGGACGCGGCTGGA
GTCGGCGGCGGAGGCGGCGGTGGCGTGGGAGGAGGAGTTCGAGAGGGTGGAGACGTTCAC
GGCGACGTCGCACCGCAAGTCCGGCGCCGCCTTCCACCCGTGGGACCTCGCCTTCTCCGT
CTTCGTCAATGATTCAAATAAAGGGCCAAAGGGTGAATTGATTCTGGGTACCGCTTCACT
GAACCTAGCAGAGTACACATCTGCTTCTGAAGAAGTCGAGATAATCCTCCCATTGTCGGT
GCCAAACGGTTCATCCGAGTCTTCCCCATCACTTCATCTCACTTTGAGCCTGGTGGAATT
AGGACCTCCTCACCAATCACCTGATGCTTCACAGCGTTCTGCTGTTACCGCTCATTGTCA
CCTTCCAGTGGTGACTCTGTTCCTTCCAGCAAAGATGAGGTTTCTTCTGTCATTAAAGCG
GGGCTGAGAAATCTAAAAATTCTCACAGATCTAGTGTCGACACGGAGGTCCAAAAAGACT
AACCGAGATGATGATGGCAGTGAGGATAAGTGCTATGTTCACAGTGATGGTGCTGAATAC
CCTTCTGATACTGACTCCCTCGACGAAGATCTAGATGATAGAGAGCGGGATGATGGCTTA
GGGGGTTCAACTGTCAGGAAATCCTTCAGCTATGGTTCCTTGCAGTCTGTGAATTATGCC
GGTGGCCTACTTTATGCACATGCAAGGATTGATGGAGAGCATGAGGACTGGATATACTAC
AGTCACCGGAAATCTGAAGCGGGTTATTCTGTAGAGCAAGAGGCCTCATCCACTGCTGAA
GAACCTGTGGTTTCAGTATCGCGGAGGAGTCTGCTTCCCTGGAAGAAGAAGAGGAAATTG
AATTTACGGTTATTGAAGGTACTGAAGAATAAAGGGGAACCTTTACTGAAGAAGGGGAAT
GACGAAGAGGGAGGTGATGACATTGACTACGATCGGCGATTATTGACCACTTCTGACGGA
AATGCTTTAGAGGGATCAGATAGCTCCATCAATAGTATGGTGTCAATATTTGGTGATGAT
AATTTTGTAGTTGGGAATTGGGAGTCAAAGGAAGTACTTAGTCGTGATGGCCACCTGAGG
TTGTCTACCCAGGTGTTCTTTGCATCAATTGACCAGAGAAGCGAACGAGCTGCAGGGGAG
AGTGCCTGTACAGCACTTGTAGCTGTCATTGCAGATTGGTTTGAAGCAAACCAGGATCTG
ATGCCAATCCGCTCGCAGTTTGATAGCCTTATCCGAGAAGGGTCTCTGGAATGGAGGAAA
CTCTGTGAGAACGAGACATACAGAGAGCGATTTCCTGACAAGCACTTTGATCTTGAAACT
GTCCTTCATGCCAAGATCCGCCCACTCACAGTTTCCCCCAACAGGTCATTCATTGGGTTC
TTCCAGCCTGAAAGTACTGAGGATGGAAGTGGATTCGATTTCCTTGATGGAGCAATGTCA
TTTGACAACATATGGGATGAGATTAGCCGAGCAGCAGAGTGCTCCACTGGAAAACCTACT
CTATATATTGTCAGCTGGAATGACCATTTCTTCGTCCTCAAGGTTGAGGCTGGCGCATAT
TACATTATCGATACACTTGGTGAGAGGCTGTATGAAGGTTGCAGCCAAGCTTACATCTTG
AAGTTTGACGACAACACTACAATTCACAAAGTACCTGCTGAAAAGAAAGAAGCCAACCCT
GATTCCAGCGGGCGGTTGAAGGATTCGTCAGATAGCTCATCAACTGATCAGGACAGCGGA
ACTGACACTGAAGAGTGCGAGCTCGTGTCGAAGGGTAAAGAATCATGCAAAGAGTACATC
AAGAGCTTCTTGGCTGCCATCCCGATCCGCGAGCTGCAGGCCGACATCAAGAAGGGTATC
ATAGCATCGACGCCACTGCACCACCGTCTCCAGATCGAGTTCCATTACACCGAATCATGC
CCCGAGGAGATCCCGCTGCCTGCTCCATTACCTGCCATTGAAGCTCCCTTTGAGTTCTCC
TGGCCTGAGCCGCCTCCTGCCATGGAGGTTACCCTAGCACCCGCAGTCGCCGCCATATAA
CTCACCATGGAAGTGCCTGCCCTAATGTTTAACATATAGAGAGCCTCTTTTTCAGGGCGA
ATTGTGAAGTGAACCAGATCAAAGATTTGGCTTCGTTTCTAGTTTGCACTGTTTTTTTGC
TGTCTAATTATGATGAACTGACTAGTATAGGTGACCCCCCCTCCCCCCCTTTGGTGTATG
TTTTCTACTTTTCTTCACCTTCCCTTCCAGGTTTTAGAGCTTTCATTTTGTAAAGAAAGA
AAGGGTGTTTGCTCCTAGTTATCTTCACCTGTGAAGTGGCTTGTGCTCAACTTGTAATCC
TTGAACCATATCATTATGTTAATTAAGCCCTT

consensusID : consensus_10077#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 585
fasta sequence 
                              [TATGGAGAAGAGGGAGGTGATGATATTGACTATGATCGACGGCTGCTAACCTCTTCTGATGGATCTGTTTCAGAGGGATCAAGGGGTGAAGATGGGTCCATTAATGGTATGGTTTCAGAATTTGGTGATGACAACTTCGTTGTTGGGAATTGGGAATTGAAAGAGATAGTTAGCCGTGATGGCCATCTGAAGCTCTCTTCCCATGTTTTCTTTGCATCAATAGACCAGAGAAGTGAGCGGGCTGCTGGGGAGAGTGCTTGCACAGCACTTGTGGCTGTTATTGCGGACTGGTTCCAATCAAACCACGATATAATGCCTATACGATCACAATTTGACAGTTTAATCCGTGAAGGATCATTAGAGTGGAGAAACCTTTGTGAGAATCTGATGTACCGAGAGCGTTTTCCTGACAAGCACTTTGATCTTGAAACTGTCCTTCAGGCCAAGATCCGCCCCCTCACAGTTTCTTCTAGCAAGTCTTTTATTGGATTCTTCCAACCTGAAGGTGCCGATGACATGCACAGATATGATTTCCTTGATGGAGCAATGTCATTTGATAGCATCTGGGCTGAGATTAGCAAAGCA]

[+] EMBL CA998810             [TATGGAGAAGAGGGAGGTGATGATATTGACTATGATCGACGGCTGCTAACCTCTTCTGATGGATCTGTTTCAGAGGGATCAAGGGGTGAAGATGGGTCCATTAATGGTATGGTTTCAGAATTTGGTGATGACAACTTCGTTGTTGGGAATTGGGAATTGAAAGAGATAGTTAGCCGTGATGGCCATCTGAAGCTCTCTTCCCATGTTTTCTTTGCATCAATAGACCAGAGAAGTGAGCGGGCTGCTGGGGAGAGTGCTTGCACAGCACTTGTGGCTGTTATTGCGGACTGGTTCCAATCAAACCACGATATAATGCCTATACGATCACAATTTGACAGTTTAATCCGTGAAGGATCATTAGAGTGGAGAAACCTTTGTGAGAATCTGATGTACCGAGAGCGTTTTCCTGACAAGCACTTTGATCTTGAAACTGTCCTTCAGGCCAAGATCCGCCCCCTCACAGTTTCTTCTAGCAAGTCTTTTATTGGATTCTTCCAACCTGAAGGTGCCGATGACATGCACAGATATGATTTCCTTGATGGAGCAATGTCATTTGATAGCATCTGGGCTGAGATTAGCAAAGCA]
[+] EMBL OSC109891            [                                                                                                                                            TGTTGGGAATTGGGAATTGAAAGAGATAGTTAGCCGTGATGGCCATCTGAAGCTCTCTTCCCATGTTTTCTTTGCATCGATAGACCAGAGAAGTGAGCGGGCTGCTGGGGAGAGTGCTTGCACAGCACTTGTGGCTGTTATTGCGGACTGGTTCCAATCAAACCAGGATATAATGCCTATACAATCACAATTTGACAGTTTAATCCGTGAAGGATCATTAGAGTGGAGAAACCTTTGTGAGAATCTGATGTACCGAGAGCGTTTTCCTGACAAGCACTTTGATCTTGAAACTGTCCTTCAGG                                                                                                                                               ]




>consensus_10077#1
TATGGAGAAGAGGGAGGTGATGATATTGACTATGATCGACGGCTGCTAACCTCTTCTGAT
GGATCTGTTTCAGAGGGATCAAGGGGTGAAGATGGGTCCATTAATGGTATGGTTTCAGAA
TTTGGTGATGACAACTTCGTTGTTGGGAATTGGGAATTGAAAGAGATAGTTAGCCGTGAT
GGCCATCTGAAGCTCTCTTCCCATGTTTTCTTTGCATCAATAGACCAGAGAAGTGAGCGG
GCTGCTGGGGAGAGTGCTTGCACAGCACTTGTGGCTGTTATTGCGGACTGGTTCCAATCA
AACCACGATATAATGCCTATACGATCACAATTTGACAGTTTAATCCGTGAAGGATCATTA
GAGTGGAGAAACCTTTGTGAGAATCTGATGTACCGAGAGCGTTTTCCTGACAAGCACTTT
GATCTTGAAACTGTCCTTCAGGCCAAGATCCGCCCCCTCACAGTTTCTTCTAGCAAGTCT
TTTATTGGATTCTTCCAACCTGAAGGTGCCGATGACATGCACAGATATGATTTCCTTGAT
GGAGCAATGTCATTTGATAGCATCTGGGCTGAGATTAGCAAAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10077#0      CTCTCCTCTCCTCTCCTCTCCTCGTATATTCCTCCATCTCCTCCTCCCGTCCCAATCTCC 60
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      AATCTCCAACCCTCGCAATCCCAAATCCCAACCCGACCCCGACACAGATCCTCTCCGCTA 120
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      ATCCCAATTCCGCCGCCAAAATCCACCCTTGCGCTGTCCCCCCCTCGCCAATTCGATCTT 180
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GATTTTGATTTGAGAAAATCGCGTGTTCTTTTGGAGGGAAGAGAAGATTTGGGAGTTCTT 240
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      TTGAAGGGGGGGGGGGTTGATGGTGGCGAGGATGTGGCCGTGGCCGCCTCCGGCGAGGAA 300
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GTTCCGTGTCAGGCTGGTGGTGCGGCGGGCGGAGGGGCTCACGGCGACGGCGACGGCGAC 360
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GGCGAGCTCGTCGCCGGTGGCGGAGGCGAAGGTGGCGGTGGAGGTGAGGTGGAAGGGGCC 420
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      CAAGGCGTCGCCGCTGGGGTCGCTGCGGCGGGTGATGCACAGCAACCGGACGCGGCTGGA 480
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GTCGGCGGCGGAGGCGGCGGTGGCGTGGGAGGAGGAGTTCGAGAGGGTGGAGACGTTCAC 540
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GGCGACGTCGCACCGCAAGTCCGGCGCCGCCTTCCACCCGTGGGACCTCGCCTTCTCCGT 600
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      CTTCGTCAATGATTCAAATAAAGGGCCAAAGGGTGAATTGATTCTGGGTACCGCTTCACT 660
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GAACCTAGCAGAGTACACATCTGCTTCTGAAGAAGTCGAGATAATCCTCCCATTGTCGGT 720
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GCCAAACGGTTCATCCGAGTCTTCCCCATCACTTCATCTCACTTTGAGCCTGGTGGAATT 780
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      AGGACCTCCTCACCAATCACCTGATGCTTCACAGCGTTCTGCTGTTACCGCTCATTGTCA 840
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      CCTTCCAGTGGTGACTCTGTTCCTTCCAGCAAAGATGAGGTTTCTTCTGTCATTAAAGCG 900
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GGGCTGAGAAATCTAAAAATTCTCACAGATCTAGTGTCGACACGGAGGTCCAAAAAGACT 960
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      AACCGAGATGATGATGGCAGTGAGGATAAGTGCTATGTTCACAGTGATGGTGCTGAATAC 1020
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      CCTTCTGATACTGACTCCCTCGACGAAGATCTAGATGATAGAGAGCGGGATGATGGCTTA 1080
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GGGGGTTCAACTGTCAGGAAATCCTTCAGCTATGGTTCCTTGCAGTCTGTGAATTATGCC 1140
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GGTGGCCTACTTTATGCACATGCAAGGATTGATGGAGAGCATGAGGACTGGATATACTAC 1200
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      AGTCACCGGAAATCTGAAGCGGGTTATTCTGTAGAGCAAGAGGCCTCATCCACTGCTGAA 1260
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GAACCTGTGGTTTCAGTATCGCGGAGGAGTCTGCTTCCCTGGAAGAAGAAGAGGAAATTG 1320
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      AATTTACGGTTATTGAAGGTACTGAAGAATAAAGGGGAACCTTTACTGAAGAAGGGGAAT 1380
consensus_10077#1      ---------------------------------------------------------TAT 3
                                                                                 **

consensus_10077#0      GACGAAGAGGGAGGTGATGACATTGACTACGATCGGCGATTATTGACCACTTCTGACGGA 1440
consensus_10077#1      GGAGAAGAGGGAGGTGATGATATTGACTATGATCGACGGCTGCTAACCTCTTCTGATGGA 63
                       *  ***************** ******** ***** **  *  * *** ******* ***

consensus_10077#0      AATGCTTTAGAGGGATCA---------GATAGCTCCATCAATAGTATGGTGTCAATATTT 1491
consensus_10077#1      TCTGTTTCAGAGGGATCAAGGGGTGAAGATGGGTCCATTAATGGTATGGTTTCAGAATTT 123
                         ** ** **********         *** * ***** *** ******* ***  ****

consensus_10077#0      GGTGATGATAATTTTGTAGTTGGGAATTGGGAGTCAAAGGAAGTACTTAGTCGTGATGGC 1551
consensus_10077#1      GGTGATGACAACTTCGTTGTTGGGAATTGGGAATTGAAAGAGATAGTTAGCCGTGATGGC 183
                       ******** ** ** ** ************** *  ** **  ** **** *********

consensus_10077#0      CACCTGAGGTTGTCTACCCAGGTGTTCTTTGCATCAATTGACCAGAGAAGCGAACGAGCT 1611
consensus_10077#1      CATCTGAAGCTCTCTTCCCATGTTTTCTTTGCATCAATAGACCAGAGAAGTGAGCGGGCT 243
                       ** **** * * *** **** ** ************** *********** ** ** ***

consensus_10077#0      GCAGGGGAGAGTGCCTGTACAGCACTTGTAGCTGTCATTGCAGATTGGTTTGAAGCAAAC 1671
consensus_10077#1      GCTGGGGAGAGTGCTTGCACAGCACTTGTGGCTGTTATTGCGGACTGGTTCCAATCAAAC 303
                       ** *********** ** *********** ***** ***** ** *****  ** *****

consensus_10077#0      CAGGATCTGATGCCAATCCGCTCGCAGTTTGATAGCCTTATCCGAGAAGGGTCTCTGGAA 1731
consensus_10077#1      CACGATATAATGCCTATACGATCACAATTTGACAGTTTAATCCGTGAAGGATCATTAGAG 363
                       ** *** * ***** ** ** ** ** ***** **  * ***** ***** **  * ** 

consensus_10077#0      TGGAGGAAACTCTGTGAGAACGAGACATACAGAGAGCGATTTCCTGACAAGCACTTTGAT 1791
consensus_10077#1      TGGAGAAACCTTTGTGAGAATCTGATGTACCGAGAGCGTTTTCCTGACAAGCACTTTGAT 423
                       ***** ** ** ********   **  *** ******* *********************

consensus_10077#0      CTTGAAACTGTCCTTCATGCCAAGATCCGCCCACTCACAGTTTCCCCCAACAGGTCATTC 1851
consensus_10077#1      CTTGAAACTGTCCTTCAGGCCAAGATCCGCCCCCTCACAGTTTCTTCTAGCAAGTCTTTT 483
                       ***************** ************** ***********  * * ** *** ** 

consensus_10077#0      ATTGGGTTCTTCCAGCCTGAAAGTACTGAGGATGGAAGTGGATTCGATTTCCTTGATGGA 1911
consensus_10077#1      ATTGGATTCTTCCAACCTGAAGGTGCCGATGACATGCACAGATATGATTTCCTTGATGGA 543
                       ***** ******** ****** ** * ** **        ***  ***************

consensus_10077#0      GCAATGTCATTTGACAACATATGGGATGAGATTAGCCGAGCAGCAGAGTGCTCCACTGGA 1971
consensus_10077#1      GCAATGTCATTTGATAGCATCTGGGCTGAGATTAGCAAAGCA------------------ 585
                       ************** * *** **** **********  ****                  

consensus_10077#0      AAACCTACTCTATATATTGTCAGCTGGAATGACCATTTCTTCGTCCTCAAGGTTGAGGCT 2031
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GGCGCATATTACATTATCGATACACTTGGTGAGAGGCTGTATGAAGGTTGCAGCCAAGCT 2091
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      TACATCTTGAAGTTTGACGACAACACTACAATTCACAAAGTACCTGCTGAAAAGAAAGAA 2151
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GCCAACCCTGATTCCAGCGGGCGGTTGAAGGATTCGTCAGATAGCTCATCAACTGATCAG 2211
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GACAGCGGAACTGACACTGAAGAGTGCGAGCTCGTGTCGAAGGGTAAAGAATCATGCAAA 2271
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GAGTACATCAAGAGCTTCTTGGCTGCCATCCCGATCCGCGAGCTGCAGGCCGACATCAAG 2331
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      AAGGGTATCATAGCATCGACGCCACTGCACCACCGTCTCCAGATCGAGTTCCATTACACC 2391
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GAATCATGCCCCGAGGAGATCCCGCTGCCTGCTCCATTACCTGCCATTGAAGCTCCCTTT 2451
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GAGTTCTCCTGGCCTGAGCCGCCTCCTGCCATGGAGGTTACCCTAGCACCCGCAGTCGCC 2511
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      GCCATATAACTCACCATGGAAGTGCCTGCCCTAATGTTTAACATATAGAGAGCCTCTTTT 2571
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      TCAGGGCGAATTGTGAAGTGAACCAGATCAAAGATTTGGCTTCGTTTCTAGTTTGCACTG 2631
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      TTTTTTTGCTGTCTAATTATGATGAACTGACTAGTATAGGTGACCCCCCCTCCCCCCCTT 2691
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      TGGTGTATGTTTTCTACTTTTCTTCACCTTCCCTTCCAGGTTTTAGAGCTTTCATTTTGT 2751
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      AAAGAAAGAAAGGGTGTTTGCTCCTAGTTATCTTCACCTGTGAAGTGGCTTGTGCTCAAC 2811
consensus_10077#1      ------------------------------------------------------------
                                                                                   

consensus_10077#0      TTGTAATCCTTGAACCATATCATTATGTTAATTAAGCCCTT 2852
consensus_10077#1      -----------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)