These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10090#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1416 fasta sequence [CACGCATCTCCACTCCTCTTGCATCTCCGGCGAGTTCTCTCCGGCGAGCTCCCTCGCCGCCGGCGATGGAGTTCATCGACGACGACTGGGACTACCAGCCACGCGCGCGAGTCATCCACTCCCGCAGCAACGCTAACTCCAACGGTGCCACCACCGCCTCGTCGTCCCAACCGACCCGCTCCCTCCCCCACACCGCCGCCTGCGCCGCCGCGGCCGTGGCGCTCCTCGCCGCGGCGTACTACCTCCTCCCGGACTACCAGGTCCTCGCATCCGTCGTCGTCTGGGTCGCGTCCTCCCTCCTCCTCGCCCCCTTCGCGCCCTCCTCCGCCACCGGCGGCGACGTCTCCGTCGGCCGCGGGGATCCCCTCCCCGAGCAGGAGCCCGTCGAGGAACCCGTCTCGGATCCCGCCCCCACCTCCCGCCGCGGTCGGCGCCAGAGCTCGAGCTCGAACCCGACGCCTCCGCCCCCGAAGCCCTCAGATCCGATCGCGCCTCCGCCGCCGCGACACGCGGCGGCTGCGGCTGCGGCTGCGGCGACGGCCGTGTCGGATGGCGGCGAGGCGGTGGAGGACGCCGGCGAGTGGACCGACCAAGAGATGGACATCCTCCGCCGCCAGATGGTGAAGCACCCGGCGGGTGAGCCGCAGCGGTGGGAGAAGATTGCCGCGGCGTTCGGCGGCCGCCGCACGCCGGAGAGCGTAATCCGCGCGGCGAAGTCCGGCGGCGGCGCTGCTGCCGCGGGGGCCTCGTTCGACCAGTTCCTCCGCAAGCGCAAGCCGCTCGACCCGAGGTCCGAGGCGACCGACGCAGGAGGTGGCAATGCCGGAGGAGGAGGAGGGGAGAGTGGTGATGGGTCTTGGAGCGCCGGCGATGACCGGGCATTGCTCAACGCGCTCAAGGAGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGACGAAGGCAGCTTGCATGAAGAGGGTCACCGAGCTCAAGCGCGATTTCCGGAGCAGCAAGGCAGCATCGGAGGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTGAGAGTAAGGTTTTAGAC--AGAGATTTACCATGATGAAACGAGAAACGAAAAGCCATTTGCTCCGGGGTGATGCCAAATGAAGGAGACAACTGAATTATAGAACAGATGGTGTACTTTTATTGTTTTG-AGAAAGGTCAGGAAAAAAATCCTTGATACATGAAGATACTGGGACACACGAAAACAAACAGATTGCCAGATTGTAAAAGAAATTGTAGCCCCTTGTTTGGTTGTAGTGTCACTCAAGCCTCCATCCAACATGTGTTAACATTACGTGACTGTTTCTGCTCATCTTTTGATAGGGCTAATACGATACACACTGTTCTCTTCCAAAAAAAAA] [+] EMBL AK073617 [CACGCATCTCCACTCCTCTTGCATCTCCGGCGAGTTCTCTCCGGCGAGCTCCCTCGCCGCCGGCGATGGAGTTCATCGACGACGACTGGGACTACCAGCCACGCGCGCGAGTCATCCACTCCCGCAGCAACGCTAACTCCAACGGTGCCACCACCGCCTCGTCGTCCCAACCGACCCGCTCCCTCCCCCACACCGCCGCCTGCGCCGCCGCGGCCGTGGCGCTCCTCGCCGCGGCGTACTACCTCCTCCCGGACTACCAGGTCCTCGCATCCGTCGTCGTCTGGGTCGCGTCCTCCCTCCTCCTCGCCCCCTTCGCGCCCTCCTCCGCCACCGGCGGCGACGTCTCCGTCGGCCGCGGGGATCCCCTCCCCGAGCAGGAGCCCGTCGAGGAACCCGTCTCGGATCCCGCCCCCACCTCCCGCCGCGGTCGGCGCCAGAGCTCGAGCTCGAACCCGACGCCTCCGCCCCCGAAGCCCTCAGATCCGATCGCGCCTCCGCCGCCGCGACACGCGGCGGCTGCGGCTGCGGCTGCGGCGACGGCCGTGTCGGATGGCGGCGAGGCGGTGGAGGACGCCGGCGAGTGGACCGACCAAGAGATGGACATCCTCCGCCGCCAGATGGTGAAGCACCCGGCGGGTGAGCCGCAGCGGTGGGAGAAGATTGCCGCGGCGTTCGGCGGCCGCCGCACGCCGGAGAGCGTAATCCGCGCGGCGAAGTCCGGCGGCGGCGCTGCTGCCGCGGGGGCCTCGTTCGACCAGTTCCTCCGCAAGCGCAAGCCGCTCGACCCGAGGTCCGAGGCGACCGACGCAGGAAGTGGCAATGCCGGAGGAGGAGGAGGGGAGAGTGGTGATGGGTCTTGGAGCGCCGGCGATGACCGGGCATTGCTCAACGCGCTCAAGGAGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGACGAAGGCAGCTTGCATGAAGAGGGTCACCGAGCTCAAGCGCGATTTCCGGAGCAGCAAGGCAGCATCGGAGGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTGAGAGTAAGGTTTTAGAC AGAGATTTACCATGATGAAACGAGAAACGAAAAGCCATTTGCTCCGGGGTGATGCCAAATGAAGGAGACAACTGAATTATAGAACAGATGGTGTACTTTTATTGTTTTG AGAAAGGTCAGGAAAAAAATCCTTGATACATGAAGATACTGGGACACACGAAAACAAACAGATTGCCAGATTGTAAAAGAAATTGTAGCCCCTTGTTTGGTTGTAGTGTCACTCAAGCCTCCATCCAACATGTGTTAACATTACGTGACTGTTTCTGCTCATCTTTTGATAGGGCTAATACGATACACAC ] [+] EMBL AK103973 [ ACGCATCTCCACTCCTCTTGCATCTCCGGCGAGTTCTCTCCGGCGAGCTCCCTCGCCGCCGGCGATGGAGTTCATCGACGACGACTGGGACTACCAGCCACGCGCGCGAGTCATCCACTCCCGCAGCAACGCTAACTCCAACGGTGCCACCACCGCCTCGTCGTCCCAACCGACCCGCTCCCTCCCCCACACCGCCGCCTGCGCCGCCGCGGCCGTGGCGCTCCTCGCCGCGGCGTACTACCTCCTCCCGGACTACCAGGTCCTCGCATCCGTCGTCGTCTGGGTCGCGTCCTCCCTCCTCCTCGCCCCCTTCGCGCCCTCCTCCGCCACCGGCGGCGACGTCTCCGTCGGCCGCGGGGATCCCCTCCCCGAGCAGGAGCCCGTCGAGGAACCCGTCTCGGATCCCGCCCCCACCTCCCGCCGCGGTCGGCGCCAGAGCTCGAGCTCGAACCCGACGCCTCCGCCCCCGAAGCCCTCAGATCCGATCGCGCCTCCGCCGCCGCGACACGCGGCGGCTGCGGCTGCGGCTGCGGCGACGGCCGTGTCGGATGGCGGCGAGGCGGTGGAGGACGCCGGCGAGTGGACCGACCAAGAGATGGACATCCTCCGCCGCCAGATGGTGAAGCACCCGGCGGGTGAGCCGCAGCGGTGGGAGAAGATTGCCGCGGCGTTCGGCGGCCGCCGCACGCCGGAGAGCGTAATCCGCGCGGCGAAGTCCGGCGGCGGCGCTGCTGCCGCGGGGGCCTCGTTCGACCAGTTCCTCCGCAAGCGCAAGCCGCTCGACCCGAGGTCCGAGGCGACCGACGCAGGAAGTGGCAATGCCGGAGGAGGAGGAGGGGAGAGTGGTGATGGGTCTTGGAGCGCCGGCGATGACCGGGCATTGCTCAACGCGCTCAAGGAGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGACGAAGGCAGCTTGCATGAAGAGGGTCACCGAGCTCAAGCGCGATTTCCGGAGCAGCAAGGCAGCATCGGAGGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTGAGAGTAAGGTTTTAGAC AGAGATTTACCATGATGAAACGAGAAACGAAAAGCCATTTGCTCCGGGGTGATGCCAAATGAAGGAGACAACTGAATTATAGAACAGATGGTGTACTTTTATTGTTTTG AGAAAGGTCAGGAAAAAAATCCTTGATACATGAAGATACTGGGACACACGAAAACAAACAGATTGCCAGATTGTAAAAGAAATTGTAGCCCCTTGTTTGGTTGTAGTGTCACTCAAGCCTCCATCCAACATGTGTTAACATTACGTGACTGTTTCTGCTCATCTTTTGATAGGGCTAATACGATACACAC ] [+] EMBL CB966186 [ CACGCTGGAGAGCGTAAT CGCGCGGCGAAGT CGGCGGCGGCGCTGCTGCCGCGGGGGCCTCGTTCGACCAGTTCCTCCGCAAGCGCAAGCCGCTCGA CCGAGGTCCGAGGCGACCGACGCAGGAGGTGGCAATGCCGGAGGAGGAGGAGGGGAGAGTGGTGATGGGTCTTGGAGCGCCGGCGATGACCGGGCATTGCTCAACGCGCTCAAGGAGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGACGAAGGCAGCTTGCACGAAGAGGGTCACCGAGCTCAAGCGCGATTTCCGGAGCAGCAAGGCAGCATCGGAGGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTGAGAGTAAGGTTTTAGACAAAGAGATATACCATGATGAAACGAGAAACGAAAAGCCATTTGCTCCGGGGTGATGCCAAATGAAGGAGACAACTGAATTATAGAACAGATGGTGTACTTTTATT ] [+] EMBL BU667315 [ CGGAGAGCGTAAT CGCGCGGCGAAGTCCGGCGGCGGCGCTG TGCCGCCGGGGCCTCGTTCGACCAGTTCCTCCGCAAGCGCAAGCCGCTCGACCCGAGGTCCGAGGCGACCGACGCAGGAGGTGGCAATGCCGGAGGAGGAGGAGGGGAGAGTGGTGATGGGTCTTGGAGCGCCGG GATGACCGGGCATTGCTCAACGCGCTCAAGGAGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGACGAAGGCAGCTTGCATGAAGAGGGTCACCGAGCTCAAGCGCGATTTCCGGAGCAGCAAGGCAGCATCAGAGGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTGAGAGTAAGGTTTTAGAC AGAGATTTACCATGATGAAACGAGAAACGAAAAGCCATTTGCTCCGGGGTGATGCCAAATGAAGGAGACAACTGAATTATAGAACAGATGGTGTACTTTTATTGTTTTGAAGAA ] [+] EMBL BI305648 [ GAGAGCGTAATCCGCGCGGCGAAGTCCGGCGGCGGCGCTGCTGCCGCGGGGGCCTCGTTCGACCAGTTCCTCCGCAAGCGCAAGCCGCTCGACCCGAGGTCCGAGGCGACCGACGCAGGAGGTGGCAATGCCGGAGGAGGAGGAGGGGAGAGTGGTGATGGGTCTTGGAGCGCCGGCGATGACCGGGCATTGCTCAACGCGCTCAAGGAGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGACGAAGGCAGCTTGCACGAATAGGGTCACCGAGCTCAAGCTCGATTTCCGGAGCATCAAGGCAGCTTCGGATGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTGAGAGTTAGGTTTTAGACAAAGAGATTTACCATGATGAAACCAGAAACCAAAAGCCATTTTCTCCGGGGTGATGCCNATTGAAGGAGACAACTGAATTATATAACAGATGGTGTTCTTTTTTTGTTTTG AGAAAGGTCAGGAAAAAAATCCT ] [+] EMBL AU070932 [ CAATGCCGGAGGAGGAGGAGGGGAGAGTGGTGATGGGTCTTGGAGCGCCGGCGATGACCGGGCATTGCTCAACGCGCTCAAGGAGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGACGAAGGCAGCTTGCATGAAGAGGGTCACCGAGCTCAAGCGCGATTTCCGGAGCAGCAAGGCAGCATCGGAGGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTGAGAGTAAGGTTTTAGAC AGAGATTTACCATGATGAAACGAGAAACGAAAAGCCATTTGCTCCGGGGTGATGCCAAATGAAGGAGACAACTGAATTATAGAACAGATGGTGTACTTTTATTGTTTTG AGAAAGGTCAGGAAAAAAATCCTTGATACATGAAGATACTGGGACACACGAAAACAAACAGATTGCCAGATTGTAAAAGAAATTGTAGCCCCTTGTTTGGTTGTAGTGTCACTCAAGCCTCCATCCAACATGTGTTAACATTACGTGACTGTTTCTGCTCATCTTTTGATANGGCTAATACGATACACACTGTTCTCTTCCAAAAAAAAA] consensusID : consensus_10090#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [CGGCGCTGCTGCCGCGGGGGCCTAGTTCGACCACTTCCTCCGTAAGCTCAAGCCGCTCGACCAGAGGAATCATGATCGTCACCTACGCCGTGCAGATAGAATTCTAAACTTTCAGTACCGCACTGACGGCCATTTATTATTATGCATATAGTACCTATTCCTTTTGGTCAGATACATTAGTTTACCTATATAAATCTTCCGACTTCTTATTTTTTTACATGCTTCCGTTATATTAT] [+] EMBL CA756872 [CGGCGCTGCTGCCGCGGGGGCCTAGTTCGACCACTTCCTCCGTAAGCTCAAGCCGCTCGACCAGAGGAATCATGATCGTCACCTACGCCGTGCAGATAGAATTCTAAACTTTCAGTACCGCACTGACGGCCATTTATTATTATGCATATAGTACCTATTCCTTTTGGTCAGATACATTAGTTTACCTATATAAATCTTCCGACTTCTTATTTTTTTACATGCTTCCGTTATATTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10090#0 CACGCATCTCCACTCCTCTTGCATCTCCGGCGAGTTCTCTCCGGCGAGCTCCCTCGCCGC 60 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 CGGCGATGGAGTTCATCGACGACGACTGGGACTACCAGCCACGCGCGCGAGTCATCCACT 120 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 CCCGCAGCAACGCTAACTCCAACGGTGCCACCACCGCCTCGTCGTCCCAACCGACCCGCT 180 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 CCCTCCCCCACACCGCCGCCTGCGCCGCCGCGGCCGTGGCGCTCCTCGCCGCGGCGTACT 240 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 ACCTCCTCCCGGACTACCAGGTCCTCGCATCCGTCGTCGTCTGGGTCGCGTCCTCCCTCC 300 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 TCCTCGCCCCCTTCGCGCCCTCCTCCGCCACCGGCGGCGACGTCTCCGTCGGCCGCGGGG 360 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 ATCCCCTCCCCGAGCAGGAGCCCGTCGAGGAACCCGTCTCGGATCCCGCCCCCACCTCCC 420 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 GCCGCGGTCGGCGCCAGAGCTCGAGCTCGAACCCGACGCCTCCGCCCCCGAAGCCCTCAG 480 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 ATCCGATCGCGCCTCCGCCGCCGCGACACGCGGCGGCTGCGGCTGCGGCTGCGGCGACGG 540 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 CCGTGTCGGATGGCGGCGAGGCGGTGGAGGACGCCGGCGAGTGGACCGACCAAGAGATGG 600 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 ACATCCTCCGCCGCCAGATGGTGAAGCACCCGGCGGGTGAGCCGCAGCGGTGGGAGAAGA 660 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 TTGCCGCGGCGTTCGGCGGCCGCCGCACGCCGGAGAGCGTAATCCGCGCGGCGAAGTCCG 720 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 GCGGCGGCGCTGCTGCCGCGGGGGCCTCGTTCGACCAGTTCCTCCGCAAGCGCAAGCCGC 780 consensus_10090#1 ----CGGCGCTGCTGCCGCGGGGGCCTAGTTCGACCACTTCCTCCGTAAGCTCAAGCCGC 56 *********************** ********* ******** **** ******** consensus_10090#0 TCGACCCGAGGTCCGAGGCGACCGACGCAGGAGGTGGCAATGCCGGAGGAGGAGGAGGGG 840 consensus_10090#1 TCGACCAGAGGAATCA--TGATCGTCAC---------CTACGCCGT--------GCAGAT 97 ****** **** * ** ** * * * * **** * * consensus_10090#0 AGAGTGGTGATGGGTCTTGGAGCGCCGGCGATGACCGGGCATTGCTCAACGCGCTCAAGG 900 consensus_10090#1 AGAATTCTAA--ACTTTCAGTACCGCACTGACGGCCATTTATTATTATGCATATAGTACC 155 *** * * * * * * * * ** * ** *** * * * consensus_10090#0 AGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGTGCCCGGGAAGA 960 consensus_10090#1 TATTCCTTTTGGTCAGATACATTAGTTTACCTATATAAATCTTCCGACTTCTTATTTTTT 215 **** ** ** ** ** * * * * * consensus_10090#0 CGAAGGCAGCTTGCATGAAGAGGGTCACCGAGCTCAAGCGCGATTTCCGGAGCAGCAAGG 1020 consensus_10090#1 TACATGCTTCCGTTATATTAT--------------------------------------- 236 * ** * ** consensus_10090#0 CAGCATCGGAGGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTG 1080 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 AGAGTAAGGTTTTAGACAGAGATTTACCATGATGAAACGAGAAACGAAAAGCCATTTGCT 1140 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 CCGGGGTGATGCCAAATGAAGGAGACAACTGAATTATAGAACAGATGGTGTACTTTTATT 1200 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 GTTTTGAGAAAGGTCAGGAAAAAAATCCTTGATACATGAAGATACTGGGACACACGAAAA 1260 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 CAAACAGATTGCCAGATTGTAAAAGAAATTGTAGCCCCTTGTTTGGTTGTAGTGTCACTC 1320 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 AAGCCTCCATCCAACATGTGTTAACATTACGTGACTGTTTCTGCTCATCTTTTGATAGGG 1380 consensus_10090#1 ------------------------------------------------------------ consensus_10090#0 CTAATACGATACACACTGTTCTCTTCCAAAAAAAAA 1416 consensus_10090#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||