These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1484 fasta sequence [GCCAAGACACCCATTGCCTATTCCTGGACCTCAGCCATTGGTGTCAAACGCTCAACAACCTCCGCTTCAATTCCAAGCAAACCCCTCAATTGGGTCTCCCTTTGGTAGACCCCCTGGAATTGTAAGCCCGCAACTAACTCCATCTTCCACATTGCCGCGGTCTGTTAGACCTCTTCAAACACCCCATGCATCTGGAGGATGGCTAAATTTTTCTTCTGTTCCAGTGCAATCTCAGAGGCCTTCACCAGCTTTTATGCCAGTGAGACCTCCTATTTCCGTGTCTCCTCTTGTTTCAAGTCCACAGCTGGAAGGTGCCGCTGTTCCATCGTTTCCTCGTCAATCAAATATCTCCACAAGCTATGGCACTCAGCATCATCCATCAGGCGCAAGCTTTGCATCTTCAGCAACAATGCCTTCCATACCTCCTGGTGCCCCCCAATTGTCACCTCAGGGTCCTTCCTCAATGCCAGTGCTGTCGTCTCCTGCTGGGTTAACAACACAGCCACCTTATCCGCTGCCGATGCAAATGCGTCCTCCCATGGCAACACCTGCTCAAATGAGAGGCCCGCCTTCACCTTTCCCTCAGACTGGGCCAACTCCTGGCATGCCACCTGCTGGCGGGTTTGGTGTGCCTGGTTCTGGAAACATGACCGC-TATGAGGCCACCAC-GCCCAAGC-AGCGGT-GATTTT-ACCTTT--CGGCC-TCTTGTGTC-AGCTTCACC--AACACC--AGAGCTTGGAGCATCAG-GCAG-TCAAGT--GCCA-TTATT--CCA-TCCTGG-CAA--CC-A-G-AGACCACCTATGGCGCGAGTTGAAGGTTTCCAAAGGCCTATTGATATGGGTCATCAGGG-CCGGGCGTATGCCACTGGTCCACCGCATCCACATCAACATCCACATCCACATGCACACTTTGGTGGTGGAGGCTTCCTCCCAAGGAATCCAGCTGCATCTGTGCTTCAATCGGCAGGGACAAGGGGGTTTGTTGGAGCTTTCCCTCTCCCGCCAGCGGCAGTTGAAGCACAACGGCCGTTTCATGTGTTGGCACAAGCACAACAGAAGCCAATATACGATCCATTTGTGCCGAGTGGTGCAGTAATGTCAGGAGGACCTGGAGGTGGAGGAGGAAGAAAAAGGAAGACGGAGGATGACAAGGCTGAGTACGAGGATCTCATGGCGTCCGTTGGTGTCAAGTGACATATGCACTTTCTTTCTTGAGAAGAGTTGGGATCT-TTCTTTCTTTCTTGAGAAGAGTTCA-T-TTGCTA-CTAGT-TGA-CTTTATTAGACTA-CA-CTAGACTAGAAGAGTATAGGATGAGTAATTTTGGCATTAAAGGATAGTAGAAGAGAAGAATGACTGAATGTTTGTTTGTCTGTTATTGATCACTTGTATGTTTTGGTATATTGATCGATGATG-AAATTAAAGCATCGTAATGTCTTGTTTCCTCTTATGTTGTCCTGTTTGGAGAAAATTAAGGAAAATCTTTGATGCAAAAAAAAAAAAAAAAAA] [+] EMBL CB680622 [GCCAAGACACCCATTGCCTATTCCTGGACCTCAGCCATTGGTGTCAAACGCTCAACAACCTCCGCTTCAATTCCAAGCAAACCCCTCAATTGGGTCTCCCTTTGGTAGACCCCCTGGAATTGTAAGCCCGCAACTAACTCCATCTTCCACATTGCCGCGGTCTGTTAGACCTCTTCAAACACCCCATGCATCTGGAGGATGGCTAAATTTTTCTTCTGTTCCAGTGCAATCTCAGAGGCCTTCACCAGCTTTTATGCCAGTGAGACCTCCTATTTCCGTGTCTCCTCTTGTTTCAAGTCCACAGCTGGAAGGTGCCGCTGTTCCATCGTTTCCTCGTCAATCAAATATCTCCACAAGCTATGGCACTCAGCATCATCCATCAGGCGCAAGCTTTGCATCTTCAGCAACAATGCCTTCCATACCTCCTGGTGCCCCCCAATTGTCACCTCAGGGTCCTTCCTCAATGCCAGTGCTGTCGTCTCCTGCTGGGTTAACAACACAGCCACCTTATCCGCTGCCGATGCAAATGCGTCCTCCCATGGCAACACCTGCTCAAATGAGAGGCCCGCCTTCACCTTTCCCTCAGACTGGGCCAACTCCTGGCATGCCACCTGCTGGCGGGTTTGGTGTGCCTGGTTCTGGAAACATGACCGC TATGAGGCCACCAC GCCCAAGC AGCGGT GATTTT ACCTTT CGGCC TCTTGTGTC AGCTTCACC AACACC AGAGCTTGGAGCATCAG GCAG TCAAGT GCC ] [+] EMBL C71965 [ GCACTCAGCATCATCCATCAGGCGCAAG TTTGCATCTTCAGCAACAATGCCTTCCATACCTCCTGGTGCCCCCCAATTGTNACCTCAGGGTCCTTCCTCAATGCCAGTGCTGTCGTCTCCTGCTGGGTTAACAACACAGCCACCTTATCCGCTGCCGATGCAAATGCGTCCTCCCATGGCAACACCTGCTCAAATGAGAGGCCCGCCTTCACCTTTCCCTCAGACTGGGCCAACTCCTGGCATGCCACCTGCTGGCGGGTTTGGTGTGCCTGGTTCTGGAAACATGACCGCTTATGAGGNCACCACGGCCCAAGCAAGCGGTGGATTTTAACCTTTTGGGGCC TCTT ] [-] EMBL CB673292 [ TCTGGAAACATGACCGC TATGAGGCCACCAC GCCCAAGC AGCGGT GATTTT ACCTTT CGGCC TCTTGTGTC AGCTTCACC AACACC AGAGCTTGGAGCATCAG GCAG TCAAGT GCCA TTATT CCA TCCTGG CAA CC A G AGACCACCTATGGCGCGAGTTGAAGGTTTCCAAAGGCCTATTGATATGGGTCATCAGGG CCGGGCGTATGCCACTGGTCCACCGCATCCACATCAACATCCACATCCACATGCACACTTTGGTGGTGGAGGCTTCCTCCCAAGGAATCCAGCTGCATCTGTGCTTCAATCGGCAGGGACAAGGGGGTTTGTTGGAGCTTTCCCTCTCCCGCCAGCGGCAGTTGAAGCACAACGGCCGTTTCATGTGTTGGCACAAGCACAACAGAAGCCAATATACGATCCATTTGTGCCGAGTGGTGCAGTAATGTCAGGAGGACCTGGAGGTGGAGGAGGAAGAAAAAGGAAGACGGAGGATGACAAGGCTGAGTACGAGGATCTCATGGCGTCCGTTGGTGTCAAGTGACATATGCACTTTCTTTCTTGAGAAGAGTTGGGATCT TTCTTTCTTTCTTGAGAAGAGTTCA T TTGCTA CTAGT TGA CTTTATTAGACTA CA CTAGACTAGAAGAGTATAGGATGAGTAATTTTGGCATTAAAGGATAGTAGAAGAGAAGAATGACTGAATGTTTGTTTGTCTGTTATTGATCACTTGTATGTTTTGGTATATTGATCGATGATG A ] [+] EMBL BQ907189 [ gaTTT ACCTTT CCGCCNTCTTTTCTCAAGTTTCACCAAAACACCCAAGACTTTGTACAATCAGCCCAGTTCAAGTCCCCCATTTATTCCCCATTCTTGGTCAAACCCTATGTAGNCCACTTATGGCGCGAGTTGAAGGTTTCCAAAAGCCTATTGATATGGTTCATCAGGGCCCGGGCGTATGCCACTGGTCCACCGCATCCACATCAACATCCACATCCACATGCACACTTTGGTGGTGGAGGCTTCCTCCCAAGGAATCCAGCTGCATCTGCGCTTCAATCGGCAGGGACAAGGGGGTTTGTTGGAGCTTTCCCTCTCCCGCCAGCGGCAGTTGAAGCACAACGGCCGTTTCATGTGTTGGCACAAGCACAACAGAAGCCAATATACGATCCATTTGTGCCGAGTGGTGCAGTAATGTCAGGAGGACCTGGAGGTGGAGGAGGAAGAAAAAGGAAGACGGAGGATGACAAGGCTGAGTACGAGGATCTCATGGCGTCCGTTGGTGTCAAGTGACATATGCACTTTCTTTCTTGAGAAGAGTTGGGATCTCTTCTTTCTTTCTTGAGAAGAGTTCACTCTTGCTACCTAGTGTGACCTTTATTAGACTACCACCTAGACTAGAAGAGTATAGGATGAGTAATTTTGGCATTAAAGGATAGTAGAAGAGAAGAATGACTGAATGTTTGTTTGTCTGTTATTGATCACTTGTATGTTTTGGTATATTGATCGATGANGNCAATTAAAGCATCGTAAaaaaaaaa ] [-] EMBL CB644399 [ tgnTGTC AGCTTCACC AACACC AGAGCTTGGAGCATCAG GCAG TCAAGT GCCA TTATT CCA TCCTGG CAA CC A G AGACCACCTATGGCGCGAGTTGAAGGTTTCCAAAGGCCTATTGATATGGGTCATCAGGG CCGGGCGTATGCCACTGGTCCACCGCATCCACATCAACATCCACATCCACATGCACACTTTGGTGGTGGAGGCTTCCTCCCAAGGAATCCAGCTGCATCTGTGCTTCAATCGGCAGGGACAAGGGGGTTTGTTGGAGCTTTCCCTCTCCCGCCAGCGGCAGTTGAAGCACAACGGCCGTTTCATGTGTTGGCACAAGCACAACAGAAGCCAATATACGATCCATTTGTGCCGAGTGGTGCAGTAATGTCAGGAGGACCTGGAGGTGGAGGAGGAAGAAAAAGGAAGACGGAGGATGACAAGGCTGAGTACGAGGATCTCATGGCGTCCGTTGGTGTCAAGTGACATATGCACTTTCTTTCTTGAGAAGAGTTGGGATCT TTCTTTCTTTCTTGAGAAGAGTTCA T TTGCTA CTAGT TGA CTTTATTAGACTA CA CTAGACTAGAAGAGTATAGGATGAGTAATTTTGGCATTAAAGGATAGTAGAAGAGAAGAATGACTGAATGTTTGTTTGTCTGTTATTGATCACTTGTATGTTTTGGTATATTGATCGATGATG AAATTAAAGCATCGTAATGTCTTGTTTCCTCTTATGTTGTCCTGTTTGGAGAAAATTAAGGAAAATCTT ] [+] EMBL AU165370 [ GGGTCATCAGGC CCGGGCGTATGCCACTGGTCCACCGCATCCACATCAACATCCACATCCACATGCACACTTTGGTGGTGGAGGCTTCCTCCCAAGGAATCCAGCTGCATCTGTGCTTCAATCGGCAGGGACAAGGGGGTTTGTTGGAGCTTTCCCTCTCCNGCCAGCGGCAGTTGAAGCACAACGGCCGTTTCATGTGTTGGCACAAGCACAACAGAAGCCAATATACGATCCATTTGTNCCGAGTGGTGCAGTAATGTCAGGAGGACCTGGAGGTGGAGGAGGAAGAAAAAGGAAGACGGAGGATGACAAGGCTGAGTACGAGGATCTCATGGCGNCCGTTGGTGTCAAGTGACATATGCACTTTCTTTCTTGAGAAGAGTTGGGATCT TTCTTTCTTTCTTGAGAAGAGTTCA T TTGCTA CTAGT TGA CTTTATTAGACTA CA CTAGACTAGAAGAGTATAGGATGAGTAATTTTGGCATTAAAGGATAGTAGAAGAGAAGAATGACTGAATGTTTGTTTGTCTGTTATTGATCACTTGTATGTTTTGGTATATTGATCGATGATG AAATTAAAGCATCGTAATGTCTTGTTTCCTCTTATGTTGTCCTGTTTGGAGAAAATTAAGGAAAATCTTTGATGCAAAAAAAAAAAAAAAAAA] consensusID : consensus_10099#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [AAGAGCCCCCCAAAGNTGATACCGTAGTNCCCCCAGTTTGTGTCTCGGCCCGCGCAATGTTCGGGTTCCCAGTATAATGTTCCCACGNGTAGGGAAACCCCTGGGGAAAGTGTTTCGTTGTAAGTGGAAGGTGTCATAATGTATATTAAACCGGGATACGCACCCGGACGGGATGGGACCATCAGGGCCTNAGAAGTGACCGAGGATGCCTNCATGGGCGTCCCGTTGGGTCGTGNCACAGTGGACCAATGATGGCGCACCTGTTGCTGTGTGCTTCGAGAAGGANTCTGCGGGATGCTGTTGCTTTGCTGTGTGCTTGGAGGAAGGAGGTGTGCAATGTGTGGCTGACTGAGGTGTGGACTGTGTGATTGAGGACTGACACTGAGACTGAGAAGAGTGATAGGATGGAGTGAATTTTGGGCCATTAAAGGATAGTGAGAAGAGAAGAATGGACTGAAATGGTTTGTTTGTCTGTTATTGATCACTTGTATTTTTGGTATATTGATCGATGATGCCATTAAAGCATCGTAAAAAAAA] [+] EMBL BQ907137 [AAGAGCCCCCCAAAGNTGATACCGTAGTNCCCCCAGTTTGTGTCTCGGCCCGCGCAATGTTCGGGTTCCCAGTATAATGTTCCCACGNGTAGGGAAACCCCTGGGGAAAGTGTTTCGTTGTAAGTGGAAGGTGTCATAATGTATATTAAACCGGGATACGCACCCGGACGGGATGGGACCATCAGGGCCTNAGAAGTGACCGAGGATGCCTNCATGGGCGTCCCGTTGGGTCGTGNCACAGTGGACCAATGATGGCGCACCTGTTGCTGTGTGCTTCGAGAAGGANTCTGCGGGATGCTGTTGCTTTGCTGTGTGCTTGGAGGAAGGAGGTGTGCAATGTGTGGCTGACTGAGGTGTGGACTGTGTGATTGAGGACTGACACTGAGACTGAGAAGAGTGATAGGATGGAGTGAATTTTGGGCCATTAAAGGATAGTGAGAAGAGAAGAATGGACTGAAATGGTTTGTTTGTCTGTTATTGATCACTTGTATTTTTGGTATATTGATCGATGATGCCATTAAAGCATCGTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10099#0 GCCAAGACACCCATTGCCTATTCCTGGACCTCAGCCATTGGTGTCAAACGCTCAACAACC 60 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 TCCGCTTCAATTCCAAGCAAACCCCTCAATTGGGTCTCCCTTTGGTAGACCCCCTGGAAT 120 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 TGTAAGCCCGCAACTAACTCCATCTTCCACATTGCCGCGGTCTGTTAGACCTCTTCAAAC 180 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 ACCCCATGCATCTGGAGGATGGCTAAATTTTTCTTCTGTTCCAGTGCAATCTCAGAGGCC 240 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 TTCACCAGCTTTTATGCCAGTGAGACCTCCTATTTCCGTGTCTCCTCTTGTTTCAAGTCC 300 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 ACAGCTGGAAGGTGCCGCTGTTCCATCGTTTCCTCGTCAATCAAATATCTCCACAAGCTA 360 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 TGGCACTCAGCATCATCCATCAGGCGCAAGCTTTGCATCTTCAGCAACAATGCCTTCCAT 420 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 ACCTCCTGGTGCCCCCCAATTGTCACCTCAGGGTCCTTCCTCAATGCCAGTGCTGTCGTC 480 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 TCCTGCTGGGTTAACAACACAGCCACCTTATCCGCTGCCGATGCAAATGCGTCCTCCCAT 540 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 GGCAACACCTGCTCAAATGAGAGGCCCGCCTTCACCTTTCCCTCAGACTGGGCCAACTCC 600 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 TGGCATGCCACCTGCTGGCGGGTTTGGTGTGCCTGGTTCTGGAAACATGACCGCTATGAG 660 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 GCCACCACGCCCAAGCAGCGGTGATTTTACCTTTCGGCCTCTTGTGTCAGCTTCACCAAC 720 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 ACCAGAGCTTGGAGCATCAGGCAGTCAAGTGCCATTATTCCATCCTGGCAACCAGAGACC 780 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 ACCTATGGCGCGAGTTGAAGGTTTCCAAAGGCCTATTGATATGGGTCATCAGGGCCGGGC 840 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 GTATGCCACTGGTCCACCGCATCCACATCAACATCCACATCCACATGCACACTTTGGTGG 900 consensus_10099#1 ------------------AAGAGCCCCCCAAAGNTGATA-CCGTA-GTNCCCCCAGTTTG 40 * * *** * * ** * * * * * * * consensus_10099#0 TGGAGGCTTCCTCCCAAGGAATCCAGCTGCATCTGTGCTTCAATCGGCAGGGACAAGGGG 960 consensus_10099#1 TG----TCTCGGCCCGCGCAATGTTCGGGTTCCCAGTATAATGTTCCCACGNGTAGGGAA 96 ** ** *** * *** * * * * ** * * ** consensus_10099#0 GTTTGTTGGAGCTTTCCCTCTCCCGCCAGCGGCAGTTGAAGCACAACGGCCGTTTCATGT 1020 consensus_10099#1 ACCC-CTGGGGAAAGTGTTTCGTTGTAAGTGGAAGGTGT--CATAATGTATATT----AA 149 *** * * * ** ** ** ** ** ** * ** consensus_10099#0 GTTGGCACAAGCACAACAGAAGCCAATATACGATCCATTTGTGCCGAGTGGTGCAGTAAT 1080 consensus_10099#1 ACCGGGATACGCACC-CGGACGGGATGGGACCATCAGGGCCTNAGAAGTGAC-CGAGGAT 207 ** * * **** * ** * * ** *** * **** * ** consensus_10099#0 GTCAGGAGGACCTGGAGGTGGAGGAGGAAGAAAAAGGAAGACGGAGGATGACAAGGCTGA 1140 consensus_10099#1 GCCTNCATGGGCGTCCCGTTGGGTCGTGNCACAGTGGA---CCAATGATGGCGCACCTGT 264 * * * * * ** * * * * * *** * * **** * *** consensus_10099#0 GTACGAGGATCTCATGGCGTCCGTTGGTGTCAAGTGACA-TATGCACTTTCTTTCTTGAG 1199 consensus_10099#1 TGCTGTGTGCTTCGAGAAGGANTCTGCGGGATGCTGTTGCTTTGCTGTGTGCTTGGAGGA 324 * * ** * * ** * ** * *** * * ** * consensus_10099#0 AAGAGTTGGGATCTTTCTTTCTTTCTTGAGAAGAGTTCATTTG-CTACTAGTTGACTTTA 1258 consensus_10099#1 AGGAGGTGTGCAATGTGTGGCTGACTGAGGTGTGGACTGTGTGATTGAGGACTGACACTG 384 * *** ** * * * * ** ** * * * ** * **** * consensus_10099#0 TTAGACTACACTAGACTAGAAGAGTATAGGATGAGTAATTTTGGCATTAAAGGATAGT-A 1317 consensus_10099#1 --AGACTG-AGAAGAGT--GATAGGATGGAGTGAATT-TTGGGCCATTAAAGGATAGTGA 438 ***** * *** * * ** ** * *** * ** * ************** * consensus_10099#0 GAAGAGAAGAATG-ACTGAAT--GTTTGTTTGTCTGTTATTGATCACTTGTATGTTTTGG 1374 consensus_10099#1 GAAGAGAAGAATGGACTGAAATGGTTTGTTTGTCTGTTATTGATCACTTGTAT-TTTTGG 497 ************* ****** ****************************** ****** consensus_10099#0 TATATTGATCGATGATGAAATTAAAGCATCGTAATGTCTTGTTTCCTCTTATGTTGTCCT 1434 consensus_10099#1 TATATTGATCGATGATGCCATTAAAGCATCGTAAAAAAAA-------------------- 537 ***************** *************** consensus_10099#0 GTTTGGAGAAAATTAAGGAAAATCTTTGATGCAAAAAAAAAAAAAAAAAA 1484 consensus_10099#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||