|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 874 fasta sequence
[CTCGTGCCGAATTCGGCACGAGGGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGTTCGGTTCGGGTCCGGTTCAATTTCGGTTTTTCCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGATTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACAACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAAATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACTTTCTCAAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAGCGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCCGCGGCTACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGTGGCTACGGTGGCGGCGGTGGTGGCGGCGGCTACGGCGGCGGCTACGGCGGCGGCTACGGCAGCCGCGGCGGCGGCAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGAACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTGTTTTTGATCGCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAAATGAATGAATGAATGAATCTTAGTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAATTTNGTGCCGGGNCCGGCACGAGCTCTTTCAAA]
[+] EMBL OSAF9411 [CTCGTGCCGAATTCGGCACGAGGGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGTTCGGTTCGGGTCCGGTTCAATTTCGGTTTTTCCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGATTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACAACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAAATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACTTTCTCAAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAGCGGCAAGGAGCTCGACGGCCGCAACATCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCCGCGGCTACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGTGGCTACGGTGGCGGCGGTGGTGGCGGCGGCTACGGCGGCGGCTACGGCGGCGGCTACGGCAGCCGCGGCGGCGGCAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGAACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTGTTTTTGATCGCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAAATGAATGAATGAATGA ]
[-] EMBL AA751949 [ TACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCGGTGGCTACGGTGGCGGCCGTGGTGGCGGCGGCTACGGCGGCGGCTACGGCGGCGGCTACGGCAGCCNNGGCGGCGGCAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATNTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGAACTATNTAGTTTGTGTTAACTGTGNGGTTGCCCATCTGTGTTTTTGATCGCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAAATNAATGAATGNNGGAATCTTAGTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAATTTNGTGCCGGGNCCGGCACGAGCTCTTTCAAA]
consensusID : consensus_10103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 778 fasta sequence
[GGCACGAGGGTTGGGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCGCCGCTCCCGAGGCGGAGGCGGCGGTGGCTACGGCC-AGCGCGGCGGAGGCGGAGGCTACNGTGGCGGCGGCTACCGTGGTGGTGGC-GG-CGGC-GTGGCTACC-GCCAGCGCCGTGAA-GGCGGCTACGGCGGTGGCGGTGG-CTACCGGGGCGGCCCT-GGTGG-CGG-GGCTACC-GTGGTGGCT-CGGGAACCCCGGGGGCGGGCACCT--CCACGGGAA-CTGGAGGAACTGGTCGGGGGGGTGCTATGCGCTATTTATTAGTCTTTCTATATTACCTACCGGTTTCGTCATAGCATCGGTGAACACGGTTGGCGCTTTGAACTCTCAAGTTGGTATCACCTCGTAGGTGTTACTTGAGGTTTGGACTCGTGGCACTGTGGTAGCTTGATCATTGGGTTGTATGACTATGTGCGGTGGCCCCTTTCATCTACAG]
[+] EMBL BE040801 [GGCACGAGGGTTGGGTGTCTCCTCCCCCTCCCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATAACCGTTAACGAGGCCCAGTCGCGCCGCTCTCGAAGCGGAGGCGGCGGTGGCTACGGCC AGCGCGGCGGAGGCGGATGCTACTGTGGCCGGGGCTACCGTGGTGGTGGC GGCCGGC GTGGCTACC GCCAGCGCCGTGAA GGCGGCTAC GCGGTGGCGGTGG CTACCGGGGCGGCCCT GGTGG CGG CGCTACC GTGGTGGCT CGGGAACCCCGGGGGCGGG ACCT CCACGGGAc ]
[+] EMBL BE040784 [ TTGGCGTTCTCCTCCCCCTCCCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGC AGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCGCCGCTCCCGAGGCGGAGGCGGCGGTGGCTACCGCC AGCGCGGCGGAGGCGGAGGCTACNGTGGCGGCGGCTACCGTGGTGGTGGC GG CCGCGGTGGCTACG GCCAGCGCCGTGAA GGCGGCTACGGCCGTGGCGGTGG CTACCGTGGGGGCCCG GGTGG CGGCGGCTACCGGTGGGGGTT CCGGAGCCCCGGGGG GCGCAACTTCCCAC GGAA CTGGAGGAA ]
[+] EMBL BE040621 [ TGGGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCC AGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCTACGGTGGTGGTGGC GG CGGCGGTGGCTACT GCCAGCGCCGTGAA GGCGGCTACNGCGGTGGCGGTGG CTACAGTGGCTGCCGTGGGTGGTGGG GGGTACC GAGGTGGCTACGGCACACGCGCCGGCAGGCACAT ACGCTGGAATCTGGATGACCTGGTCGGGGGGGTGCTATGCGCTATTTATTAGTCTTTCTATATTACCTACCGGTTTCGTCATAGCATCGGTGAACACGGTTGGCGCTTTGAACTCTCAAGTTGGTATCACCTCGTAGGTGTTACTTGAGGTTTGGACTCGTGGCACTGTGGTAGCTTGATCATTGGGTTGTATGACTATGTGCGGTGGCCCCTTTCATCTACAG]
[+] EMBL BE040949 [ ttGGCTTCTCCTCCCCCTCCCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAAGCCGCGGTGGCTACCGCCAAGCGCGGC GAGGCCGAGGCTACCGTGGCGGCGGGTACCGGGGTGGTGGCGGG CGGC GNGGCTACCGGCAAGCGCCG GAAGGGCGG TACGGCGG GGCCGTGGCCTA CGGGGCGGCCGT GGTGC CGC GGCT CC GGGGTGGGT CGG ]
consensusID : consensus_10103#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[CCCGTGCGGTAGTGAATTCGGCACGAGGCAGAGGTGGGTTGGCTTCTCCCCCCCCTCCCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCGCCGCTCCTGAGGCGGAGGCGGCGGTGGCTACCGACAGCGCGTCGGATGCCGGACGCTTCTCGCTGCCGTGTGCTACTGCTGGTTTGTGGCTGCTTGTGTATGGCTTCCCGCCAGTCGCCTCTGAAAGGCCGCCTACACGCACGTGCTGTGGCTTACCATCGGTGTCTCCTGCTTGATATAGCTTCATTTGGTGCCTACTTGCCACTCCGTTTTCTGGCA]
[+] EMBL BE040745 [CCCGTGCGGTAGTGAATTCGGCACGAGGCAGAGGTGGGTTGGCTTCTCCCCCCCCTCCCGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGGAAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCACCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGATCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCGCCGCTCCTGAGGCGGAGGCGGCGGTGGCTACCGACAGCGCGTCGGATGCCGGACGCTTCTCGCTGCCGTGTGCTACTGCTGGTTTGTGGCTGCTTGTGTATGGCTTCCCGCCAGTCGCCTCTGAAAGGCCGCCTACACGCACGTGCTGTGGCTTACCATCGGTGTCTCCTGCTTGATATAGCTTCATTTGGTGCCTACTTGCCACTCCGTTTTCTGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10103#0 -----CTCGTGCCGAATTCGGCACGAGG-------GCTTCTCCTCCCCCTCCCGGTTCGG 48
consensus_10103#1 -------------------GGCACGAGG-------G-TTGGGCTTCTCCTCCCCCTCC-- 31
consensus_10103#2 CCCGTGCGGTAGTGAATTCGGCACGAGGCAGAGGTGGGTTGGCTTCTCCCCCCCCTCC-- 58
********* * * ** * ** *** * *
consensus_10103#0 TTCGGTTCGGTTCGGGTCCGGTTCAATTTCGGTTTTTCCTTCGGTTCGGGGGTTGGTGGG 108
consensus_10103#1 --CGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGG 89
consensus_10103#2 --CGGTTCGGTTCGGGTCCGGTTCGATTTCGGTTTTTTCTTCGGTTCGGGGGTTGGTGGG 116
********************** ************ **********************
consensus_10103#0 AAAGCATGGCGGCGCCGGATGTTGATTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCA 168
consensus_10103#1 AAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCA 149
consensus_10103#2 AAAGCATGGCGGCGCCGGATGTTGAGTACCGCTGCTTCGTCGGCGGCCTCGCCTGGGCCA 176
************************* **********************************
consensus_10103#0 CCGACAACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAAA 228
consensus_10103#1 CCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGA 209
consensus_10103#2 CCGACGACCGCTCCCTCGAAGCCGCCTTCTCCACCTACGGCGAGATCCTCGAGTCCAAGA 236
***** **************************************************** *
consensus_10103#0 TCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACTTTCTCAAGCG 288
consensus_10103#1 TCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCG 269
consensus_10103#2 TCATCAACGATCGGGAGACGGGGAGGTCGCGCGGGTTCGGGTTCGTGACGTTCTCGAGCG 296
************************************************* ***** ****
consensus_10103#0 AGCAGGCCATGCGCGACGCCATCGAGGGGATGAGCGGCAAGGAGCTCGACGGCCGCAACA 348
consensus_10103#1 AGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACA 329
consensus_10103#2 AGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAACA 356
********************************* **************************
consensus_10103#0 TCACCGTCAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCC 408
consensus_10103#1 TCACCGTTAACGAGGCCCAGTCGCGCCGCTCCCGAGGCGGAGGCGGCGGTGGCTACGGCC 389
consensus_10103#2 TCACCGTTAACGAGGCCCAGTCGCGCCGCTCCTGAGGCGGAGGCGGCGGTGGCTACCGAC 416
******* ************************ *********************** * *
consensus_10103#0 AGCGCGGCGGAGGC-GGAGGCTACG-GTGGCCGCG-GCTACGGTGG--TGGTGGCGGCG- 462
consensus_10103#1 AGCGCGGCGGAGGC-GGAGGCTACN-GTGGCGGCG-GCTACCGTGG--TGGTGGCGGCG- 443
consensus_10103#2 AGCGCGTCGGATGCCGGACGCTTCTCGCTGCCGTGTGCTACTGCTGGTTTGTGGCTGCTT 476
****** **** ** *** *** * * ** * * ***** * * * ***** **
consensus_10103#0 GCGG-TGGCTACG-GCCAG----CGCCGTGAAGGCGGCTACG-GCGGTGGCGGTGGCT-A 514
consensus_10103#1 GCG--TGGCTACC-GCCAG----CGCCGTGAAGGCGGCTACG-GCGGTGGCGGTGGCT-A 494
consensus_10103#2 GTGTATGGCTTCCCGCCAGTCGCCTCTGAAAGGCCGCCTACACGCACGTGCTGTGGCTTA 536
* * ***** * ***** * * * * * ** **** ** ** ****** *
consensus_10103#0 CGGT-GGCGGC-GGTGGTGGCGGCGGCTACGGC-GGCGGCTACGGCGGCGGCTACGGCAG 571
consensus_10103#1 CCGG-GGCGGC-CCTGGTGGCGG-GGCTACCGT-GGTGGCT-------------CGGGAA 537
consensus_10103#2 CCATCGGTGTCTCCTGCTTGATATAGCTTCATTTGGTGCCTAC-----------TTGCCA 585
* ** * * ** * * *** * ** * ** *
consensus_10103#0 CCGCGGCGGCGGCAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCC 631
consensus_10103#1 CCCCGGGGGCGGGCACCTCCACGGGAACTGGAGGAACTGGTCGGGGGGGTGCT-ATGCGC 596
consensus_10103#2 CTCCGTTTTCTGGCA--------------------------------------------- 600
* ** * * *
consensus_10103#0 AAGTTATCTATCTATCTAATCGAGCTACCATCATCATCATCCGATCGTT-ATCATCGTTA 690
consensus_10103#1 TATTTATTAGTCTTTCTATATTACCTACCGGTTTCGTCATAGCATCGGTGAACACGGTTG 656
consensus_10103#2 ------------------------------------------------------------
consensus_10103#0 GTTTTGTGTGGAACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCATCTGTGTTTTTGAT 750
consensus_10103#1 GCGCTTTG---AACTCTCAAGTTGGTATCACCT-CGTAGGTGTT-ACTTGAGGTTTGGAC 711
consensus_10103#2 ------------------------------------------------------------
consensus_10103#0 CGCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAAATGAATGAATG-AATGAATCTTAG 809
consensus_10103#1 TCGTGGCACTGTGGTAGCTTGATCA--TTGGGTTGTATGACTATGTGCGGTGGCCCCTTT 769
consensus_10103#2 ------------------------------------------------------------
consensus_10103#0 TGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAATTTNGTGCCGGGNCCGGCACGAGCTCTT 869
consensus_10103#1 CATCTACAG--------------------------------------------------- 778
consensus_10103#2 ------------------------------------------------------------
consensus_10103#0 TCAAA 874
consensus_10103#1 -----
consensus_10103#2 -----
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||