These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10104#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 548 fasta sequence [AAAAAATGTGGAAGATGATGAAGAGTTTAACACAGAGACATCTCCTGAGCCGAGCATGGAAACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTGCGCCGCAGGGAGAACCCTAAGATTGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTCTGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTTTGTTTCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATGCTAGCGCATTGAATATCTTCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGTAGAATTGGTTATATGGCATCGAAAGTTGGTTAAAAA] [+] EMBL AU108283 [AAAAAATGTGGAAGATGATGAAGAG TTAACACAGAGACATCTCCTGACCCGAGCATGGAAACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTGCGCCGCAGGGAGAACCCTAAGATTGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTCTGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTTTGTTTCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATG TAGCGCATTGAATATCTTCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGTAGAATTGGTTATATGGCATCGAAAGTTGGTTAAAAA] [+] EMBL AU101173 [ AAAAATGTGGAAGATGATGAAGAG TTAACACAGAGACATCTCCTGAGCCGAGCATGGAAACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTGCGCCGCAGGGAGAACCCTAAGATTGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTCTGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTTTGTTTCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATGCTAGCGCATTGAATATCTTCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGTAGAATTGGTTATATGGCATCGAAAGTTGGTTAAAAA] [+] EMBL CB668337 [ AAAAATGTGGAACATGATGAAGAGTTTAGCACCGAGACATCTCCTGAGCCGAGCATGGAAACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTGCGCCGCAGGGAGAACCCTAAGATTGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTAGAAGGGAAAATTTCTGAAGGATTTTTG ] [-] EMBL CB660190 [ AAAATGTGGAAGATGATGAAGAGTTTAACACAGAGACATCTCCTGAGCCGAGCATGGAAACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTGCGCCGCAGGGAGAACCCTAAGATTGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTCTGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTTTGTTTCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATGCTAGCGCATTGAATATCTTCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGTAGAATTGGTTATATGGCATCGAAAGTTGGTTAt ] [-] EMBL CB630861 [ AAAATGTGGAAGATGATGAAGAGTTTAACACAGAGACATCTCCTGAGCCGAGCATGGAAACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTGCGCCGCAGGGAGAACCCTAAGATTGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTCTGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTTTGTTTCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATGCTAGCGCATTGAATATCTTCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCACTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGgta ] consensusID : consensus_10104#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [CGCTTTGAACTGTCGCCGCCATGGGAGAACCCTAAGATTGATGAGGAAACGTNGACATGCCTACCTGAATTAACGCTTGGTGGCCGAGTGTGATAGGGAAAATGTTNCTGGAAGGATTTTTGTTGTGAGGATCAGATTGCTGGTGTGTTGGTGTTCACTGTTACCTTTGGCATCGTGCTCTGAGAGACTGATGCGGCTATGGCTGAGCGCATTGAATATCTTCTTTTTTTATAACTGTTAGCAATGTTGGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCACTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGGTAGAATTGGTTATATGGCATCGAAAAAAAAAA] [+] EMBL BM421058 [CGCTTTGAACTGTCGCCGCCATGGGAGAACCCTAAGATTGATGAGGAAACGTNGACATGCCTACCTGAATTAACGCTTGGTGGCCGAGTGTGATAGGGAAAATGTTNCTGGAAGGATTTTTGTTGTGAGGATCAGATTGCTGGTGTGTTGGTGTTCACTGTTACCTTTGGCATCGTGCTCTGAGAGACTGATGCGGCTATGGCTGAGCGCATTGAATATCTTCTTTTTTTATAACTGTTAGCAATGTTGGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCACTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGGTAGAATTGGTTATATGGCATCGAAAAAAAAAA] consensusID : consensus_10104#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [TGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTCTGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTNTGTTTCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATGTAGCGCATTGAATATCTTCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGTAGAATTGGTTATATGGCAAAAAAAAAAAA] [+] EMBL AU056459 [TGATGAGAAACGTGACATGCCACCTAATTAACGCTTGTGCCGAGTTGAAGGGAAAATTTCTGAAGGATTTTTGTTGTAGGATCAGATTGCTGTTNTGTTTCACTTTACCTTTGCATCGTCTCTAGAGACTGATGCGCTATGTAGCGCATTGAATATCTTCTTTTTTTATACTGTTAGCAATTTGAATTGCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAATTAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTTTGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTGGTAGAATTGGTTATATGGCAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10104#0 AAAAAATGTGGAAGATGATGAAGAGTTTAACACAGAGACATCTCCTGAGCCGAGCATGGA 60 consensus_10104#2 ------------------------------------------------------------ consensus_10104#1 ------------------------------------------------------------ consensus_10104#0 AACAACAGATTCTCATGGACAGCCTGATCCTTCTGCTGATGGGGAGCGCTTTGAACTG-C 119 consensus_10104#2 ------------------------------------------------------------ consensus_10104#1 ----------------------------------------------CGCTTTGAACTGTC 14 consensus_10104#0 GCCGCA--GGGAGAACCCTAAGATTGATGAG-AAACGTG-ACATGCC-ACCT-AATTAAC 173 consensus_10104#2 ------------------------TGATGAG-AAACGTG-ACATGCC-ACCT-AATTAAC 32 consensus_10104#1 GCCGCCATGGGAGAACCCTAAGATTGATGAGGAAACGTNGACATGCCTACCTGAATTAAC 74 ******* ****** ******* **** ******* consensus_10104#0 GCTTGT--GCCGAGT-TGA-AGGGAAAATTTCT---GAAGGATTTTTGTTGT-AGGATCA 225 consensus_10104#2 GCTTGT--GCCGAGT-TGA-AGGGAAAATTTCT---GAAGGATTTTTGTTGT-AGGATCA 84 consensus_10104#1 GCTTGGTGGCCGAGTGTGATAGGGAAAATGTTNCTGGAAGGATTTTTGTTGTGAGGATCA 134 ***** ******* *** ********* * **************** ******* consensus_10104#0 GATTGCTGTTTTGTT-----TCACT-TTACCTTTG-CATCGT-CTCT-AGAGACTGATGC 276 consensus_10104#2 GATTGCTGTTNTGTT-----TCACT-TTACCTTTG-CATCGT-CTCT-AGAGACTGATGC 135 consensus_10104#1 GATTGCTGGTGTGTTGGTGTTCACTGTTACCTTTGGCATCGTGCTCTGAGAGACTGATGC 194 ******** * **** ***** ********* ****** **** ************ consensus_10104#0 G-CTATGCT--AGCGCATTGAATATCTTCTTTTTTTATA-CTGTTAGCAATTT--GAATT 330 consensus_10104#2 G-CTATG-T--AGCGCATTGAATATCTTCTTTTTTTATA-CTGTTAGCAATTT--GAATT 188 consensus_10104#1 GGCTATGGCTGAGCGCATTGAATATCTTCTTTTTTTATAACTGTTAGCAATGTTGGAATT 254 * ***** **************************** *********** * ***** consensus_10104#0 GCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAAT 390 consensus_10104#2 GCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAAT 248 consensus_10104#1 GCTCTTTCTTAGGTGAAGTGATCACGGGTCACTTCCGGGCATCCTTGATGTCCGATAAAT 314 ************************************************************ consensus_10104#0 TAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTT 450 consensus_10104#2 TAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTT 308 consensus_10104#1 TAGAGAAATGATATTATTTTATTATTCACTGTCGTCATAGGAGTACTGAGTACACCAGTT 374 ************************************************************ consensus_10104#0 TGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTG 510 consensus_10104#2 TGTTGCTCACATTAGAACCCATTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTG 368 consensus_10104#1 TGTTGCTCACATTAGAACCCACTACAACTGTAAAGACTGGAGTAATATTTTTAATAGTTG 434 ********************* ************************************** consensus_10104#0 G-TAGAATTGGTTATATGGCATCGAAAGTTGGTTAAAAA 548 consensus_10104#2 G-TAGAATTGGTTATATGGCAAAAAAAAAAAA------- 399 consensus_10104#1 GGTAGAATTGGTTATATGGCATCGAAAAA-----AAAAA 468 * ******************* *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||