cluster # 10113

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Oryza sativa
cluster # 10113 cluster # 10113 Sequences # 7 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10113#0 length = 458 sequences # 7

consensusID : consensus_10113#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 458
fasta sequence

                              [GTCTTCTCAGGAAGCTCCATGCCGGAGGCACC-AC-GCCGGCG-GCGAACGCGCCGTCCGCCGTCGGCCCGTTCACGCCGGGGTTCGGCAACGGGTCGTCGCCGACGTTCCCGGGGACGGGGAGCCCCGGCGGCGCGCTGACCCCCTTCGACGCCGCCGACAGCGTCATGTCCGGCGCTCG-CCGGGCGCTCTGCGCGCTGCTGCTGGCGTCGCCGATCTTCCTCTCCCTCGTTCTCTGATCAGCAGTTCAGCACTAGTTGGAGTTTGTCCATGTAAATTATGCATATGGCATTATGTCATTCGTTATAAATTCACTCACCAGAGAGAGTCAGTGACGACTCAGGAGTCA-GAGTCACCTTGACATGTTTTATTCCC-GAGTAAATGACCAGTGTTTATATGTCAGATGTCAGATTGGATCATGAAATTATTTTA-TTTAGACCATTTTGTGGAAAAAAAAAAAA]

[+] EMBL BM420313             [GTCTTCTCAGGAAGCTCCATGCCGGAGGCACC ACTGCCGGCGTGCGAACGC CCGTCCCCCGTCGGCCCGTTCACGCCGGGGTTCGGCAACGGGTCGTC CCGACGTTCCCGGGGACGGGGAGCCCCGGCGGCGCGCTGACCCCCTTCGACGCCGCCGACAGCGTCATGTCCGGCGCTCG CCGGGCGCTCTGCGCGCTGCTGCTGGCGTC CCGATCTTCCTCTCCCTCGTTCTCTGATCA CAGTTCAGCACTAGTTGGAGTTTGTCCATGTAAATTATGCATATGCCCTTATGTCATTCGTTATAAATTCACTCACTAGAGAGAGTCAGTGACGACTCAGGAGTCAGGAGTCACCTTGACATGTTTTATTCCC GAGTAAATGACCAGTGTTTATATGTCAGATGTCAGATTGGATCATGAAATTATTTTACNCTAGACCCTTTTGTGGAAAAAAAAAA  ]
[+] EMBL AU070766             [                       GGA GNACCTAC GCCGGCG G GAACGCGCCGTCCGCCGNAGGCCCGTTCACGCCGGGGTTCGGCAACGGGTCNTCGCCGACGTTCCCGGGGACGGGGAGCCCCGGCGGCGCGCTNACCCCCTTCGACGCCGCCGACAGCGTCATGTCCGGCGCTCG CC GGCGCTCTGC CGCTGCTGCTGGCGTCGCCGATCTTCCTCTCCCTCGTTCTCTGATCAGCAGTTCAGCACTAGTTGGAGTTTGTCCATGTAAATTATGCATATGGCATTATGTCATTCGTTATAAATTCACTCACCAGAGAGAGTCAGTGACGACTCAGGAGTCA GAGTCACCTTGACATGTTTTATTCCC GAGTAAATGACCAGTGTTTATATGTCAGAT                                                         ]
[+] EMBL AU101692             [                              CC AC GCCGGCG GCGAACGCGCCGTCCGCCGTCGGCCCGTTCACGCCGGGGTTCGGCAACGGGTCGTCGCCGACGTTCCCGGGGACGGGGAGCCCCGGCGGCGCGCTGACCCCCTTCGACGCCGCCGACAGCGTCATGTCCGGCGCTCGCCCGGGCGCTCTGCGCGCTGCTGCTGGCGTCGCCGATCTTCCTCTCCCTCGTTCTCTGATCAGCAGTTCAGCACTAGTTGGAGTTTGTCCATGTAAATTATGCATATGGCATTATGTCATTCGTTATAAATTCACTCACCAGAGAGAGTCAGTGACGACTCAGGAGTCA GAGTCACCTTGACATGTTTTATTCCC GAGTAAATGACCAGTGTTTATATGTCAGATGTCAGATTGGATCATGAAATTATTTTA TTTAGACCAaaaaaaa             ]
[+] EMBL AU198143             [                                                                                                             nCCGGGGACGGGGAGCCCCGGCGGCGCGCTGACCCCCTTTGACGCCGCCGACAGCGTCATGTCCGGCGCTCG CCGGGCGCTTTGCGCGCTGCTGCTGGCGTCGCCGATNTTCCTCTCCCTCGTTNTNTGATCAGCAGTTCAGCACTAGTTGGAGTTTGTCCATGTAAATTATGCATATGGCATTATGTCATTCGTTATAAATTCACTCNCCAGAGAGAGTCAGTGACGACTCAGGAGTCA GAGTCACCTTGACATGTTTTATTNCC GAGTAAATGACCAGTGTTTATATGTCAGATGTCAGATTGGATCATGAAATTATTTTA TTTAGACCATTTTGTGGAAAAAAAAAAAA]
[+] EMBL AU222778             [                                                                                                              CCGGGGACGGGGAGCCCCGGCGGCGCNCTGACCCCCTTNGACGCCGCCGACAGCGTCATGTCCGGCGCTCG CCGGGCGCTCTGCGCGCTGCTGCTGGCGTCGCCGATCTTCCTCTCCCTCGTTCTCTGATCAGCAGTTCAGCACTAGTTGGAGTTTGTCCATGTAAATTATGCATATGGCATTATGTCATTCGTTATAAATTCACTCACCAGAGAGAGTCAGTGACGACTCAGGAGTCA GAGTCACCTTGACATGTTTTATTCCC GAGTAAATGACCAGTGTTTATATGTCAaaaa                                                        ]
[-] EMBL CB685385             [                                                                                                                                                                         GTCCGGCGCTCG CCGGGCGCTTTGCGCGCTGTTGCTGGAGTAGCCGATTTTCCTTTCCCTCGTTTTCTGATCAGCAGTTCAGCATTAGTTGGAGTTTGTCCAGGTAAATTATGCATATGGCATTATGTCATTCGTTATAAATTCTCTCACCAGAGAGAGTCAGTGACGACTCAGGAGTCA GAGTCCCCTTGACATGTTTTATTCCCGGAGTAAATGACCAGTGTTTAGATGTCAGATGTCAGATTGGATCATGAAATTATTTTA TTTAGACCATTT                 ]
[+] EMBL BQ908948             [                                                                                                                                                                                                   GCGCTGCTGCTGGCGTCGCCGATCTTCCTCTCCCTCGTTCTCTGATCAGCAGTTCAGCACTAGTTGGAGTTTGTCCATGTAAATTATGCATATGGCATTATGTCATTCGTTATAAATTCACTCACTAGAGAGAGTCAGTGACGACTCAGGAGTCAGGAGTCACCTTGACATGTTTTATTCCC GAGTAAATGACCAGTGTTTATATGTCAGATGTCAGATTGGATCATGAAATTATTTTA TTTAGACCATTTTGTGGAAAAAAAAAA  ]




>consensus_10113#0
GTCTTCTCAGGAAGCTCCATGCCGGAGGCACCACGCCGGCGGCGAACGCGCCGTCCGCCG
TCGGCCCGTTCACGCCGGGGTTCGGCAACGGGTCGTCGCCGACGTTCCCGGGGACGGGGA
GCCCCGGCGGCGCGCTGACCCCCTTCGACGCCGCCGACAGCGTCATGTCCGGCGCTCGCC
GGGCGCTCTGCGCGCTGCTGCTGGCGTCGCCGATCTTCCTCTCCCTCGTTCTCTGATCAG
CAGTTCAGCACTAGTTGGAGTTTGTCCATGTAAATTATGCATATGGCATTATGTCATTCG
TTATAAATTCACTCACCAGAGAGAGTCAGTGACGACTCAGGAGTCAGAGTCACCTTGACA
TGTTTTATTCCCGAGTAAATGACCAGTGTTTATATGTCAGATGTCAGATTGGATCATGAA
ATTATTTTATTTAGACCATTTTGTGGAAAAAAAAAAAA

clustalw multiple alignements is not computed in this case