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Oryza sativa
cluster # 10125 cluster # 10125       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10125#0 length = 1755 sequences # 4  
consensus_10125#1 length = 341 sequences # 1  
consensus_10125#2 length = 298 sequences # 1  
consensus_10125#3 length = 296 sequences # 1  

consensusID : consensus_10125#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1755
fasta sequence
                              [TTACAGGTGGCTCCCCCGCCGTCTCCCCCGCGTGCCCTCCTCGCCGTCGTCGCTCGCTGCCCATTTCATCCCCCGCACGGCACGCGCGGGACGAAAGCAAAGCACGCGCACACACTCAAACCCGCGCCTCCTCCGCTCTCGTCCGTCGCTTCGGTTCGGTTCCGGCTCGATCGGGGAGGTTCCTCGGGGCGACCATGTCGTCGGCCGTCGTCGCGTCATCCACCACGTTCCTCGTCGCGCTCGCCTCTTCGGCGTCACGGGGAGGGCCCAGGAGGGGGAGGGTGGTGGGCGTGGCCGCGCCGCCGGCCCTGCTTTACGACGGCCGCGCCGGAAGGCTAGCCCTACGGGCGCCGCCTCCGCCCCGGCCTCGGCCTCGGCGTCGGGATGCGGGCGTGGTGCGCCGCGCGGATGATGGGGAGAACGAGGCGGCGGTGGAGCGGGCGGGTGAGGACGACGACGAGGAGGAGGAGTTCTCTTCGGGCGCGTGGCAGCCGCCCCGCTCGCGTCGCGGCGGCGTCGGCAAGGTCTTGAAGCGGAGGGGCACCGTCCCGCCCGTCGGCCGGTACGGCTCCGGCGGTGATGCGGCGAGAGTGCGCGGGGCGGCCGCGCCGGCGCCGGCGCCGACACAGGACGCCGCCTCAAGTAAGAACGGAGCGCTTCTCAGCGGCCGCGACGACGACACACCTGCCTCACGGAACGGATCGGTCGTTACCGGCGCCGACAAGCCTGCCGCCGCCACGCCGCCGGTGACCATAACGAAGCTCCCAGCGCCGGACTCCCCCGTGATCCTTCCATCCGTAGACAAGCCGCAGCCGGAGTTCGTCATCCCAGACGCGACGGCGCCGGCGCCGCCACCGCCCGGTTCAAATCCCAGGTCGTCCGCTCCTCTCCCCAAGCCTGACAATTCGGAATTTGCAGAGGATAAGAGCGCAAAAGTTGTTGAGAGTGCTCCGAAGCCAAAGGCGACTAGATCTTCCCCTATTCCTGCGGTAGAAGAGGAGACGTGGGATTTCAAGAAATATTTTGATCTGAACGAACCGGACGCCGCGGAGGATGGCGATGACGATGATGACTGGGCTGATTCAGATGCGTCAGATTCTGAGATCGACCAGGATGACGATTCGGGCCCTTTGGCTGGGGAGAATGTCATGAACGTGATCGTGGTGGCTGCTGAATGTTCTCCCTGGTGCAAAACAGGTGGGCTTGGAGATGTTGCAGGTGCTTTACCCAAAGCTTTGGCGAGGAGAGGACATCGTGTTATGGTTGTGGTACCAAGGTACGGTGATTACGCGGAAGCCCAG-GATGTAGGAATCAGGAAATACTACAAGGCTGCTGGACAGGATCTGGAAGTGAAATATTTCCATGCATTTATCGATGGAGTTGATTTTGTGTTCATTGACGCTCCTCTCTTCCGTCACCGTCAGGATGACATCTATGGGGGGAACAGACAGGAAATCAT-GAAGCGCATGATTCTGTTTTGTAAGGCTGCTGTTGAGGTTCCTTGGCACGTTCCATGCGGTGGTGTGCCCTATGGGGATGGCAACTTGGTGTTCCTTGCAAACGATTGGCACACTGCACTCCTGCCTGTTTATCTGAAGGCATATTACAGAGACAATGGCATGATGCAGTACACTCGCTCTGTCCTTGTGATACATAATATCGCTTACCAGGGCCGTGGCCCAGTAGATGAATTCCCCTACATGGAATTGCCGGAGCACTACCTGGATCACTTCAAGCTGTACGACCCCGTCGGCG]

[+] EMBL AF419099             [TTACAGGTGGCTCCCCCGCCGTCTCCCCCGCGTGCCCTCCTCGCCGTCGTCGCTCGCTGCCCATTTCATCCCCCGCACGGCACGCGCGGGACGAAAGCAAAGCACGCGCACACACTCAAACCCGCGCCTCCTCCGCTCTCGTCCGTCGCTTCGGTTCGGTTCCGGCTCGATCGGGGAGGTTCCTCGGGGCGACCATGTCGTCGGCCGTCGTCGCGTCATCCACCACGTTCCTCGTCGCGCTCGCCTCTTCGGCGTCACGGGGAGGGCCCAGGAGGGGGAGGGTGGTGGGCGTGGCCGCGCCGCCGGCCCTGCTTTACGACGGCCGCGCCGGAAGGCTAGCCCTACGGGCGCCGCCTCCGCCCCGGCCTCGGCCTCGGCGTCGGGATGCGGGCGTGGTGCGCCGCGCGGATGATGGGGAGAACGAGGCGGCGGTGGAGCGGGCGGGTGAGGACGACGACGAGGAGGAGGAGTTCTCTTCGGGCGCGTGGCAGCCGCCCCGCTCGCGTCGCGGCGGCGTCGGCAAGGTCTTGAAGCGGAGGGGCACCGTCCCGCCCGTCGGCCGGTACGGCTCCGGCGGTGATGCGGCGAGAGTGCGCGGGGCGGCCGCGCCGGCGCCGGCGCCGACACAGGACGCCGCCTCAAGTAAGAACGGAGCGCTTCTCAGCGGCCGCGACGACGACACACCTGCCTCACGGAACGGATCGGTCGTTACCGGCGCCGACAAGCCTGCCGCCGCCACGCCGCCGGTGACCATAACGAAGCTCCCAGCGCCGGACTCCCCCGTGATCCTTCCATCCGTAGACAAGCCGCAGCCGGAGTTCGTCATCCCAGACGCGACGGCGCCGGCGCCGCCACCGCCCGGTTCAAATCCCAGGTCGTCCGCTCCTCTCCCCAAGCCTGACAATTCGGAATTTGCAGAGGATAAGAGCGCAAAAGTTGTTGAGAGTGCTCCGAAGCCAAAGGCGACTAGATCTTCCCCTATTCCTGCGGTAGAAGAGGAGACGTGGGATTTCAAGAAATATTTTGATCTGAACGAACCGGACGCCGCGGAGGATGGCGATGACGATGATGACTGGGCTGATTCAGATGCGTCAGATTCTGAGATCGACCAGGATGACGATTCGGGCCCTTTGGCTGGGGAGAATGTCATGAACGTGATCGTGGTGGCTGCTGAATGTTCTCCCTGGTGCAAAACAGGTGGGCTTGGAGATGTTGCAGGTGCTTTACCCAAAGCTTTGGCGAGGAGAGGACATCGTGTTATGGTTGTGGTACCAAGGTACGGTGATTACGCGGAAGCCCAG GATGTAGGAATCAGGAAATACTACAAGGCTGCTGGACAGGATCTGGAAGTGAAATATTTCCATGCATTTATCGATGGAGTTGATTTTGTGTTCATTGACGCTCCTCTCTTCCGTCACCGTCAGGATGACATCTATGGGGGGAACAGACAGGAAATCAT GAAGCGCATGATTCTGTTTTGTAAGGCTGCTGTTGAGGTTCCTTGGCACGTTCCATGCGGTGGTGTGCCCTATGGGGATGGCAACTTGGTGTTCCTTGCAAACGATTGGCACACTGCACTCCTGCCTGTTTATCTGAAGGCATATTACAGAGACAATGGCATGATGCAGTACACTCGCTCTGTCCTTGTGATACATAATATCGCTTACCAGGGCCGTGGCCCAGTAGATGAATTCCCCTACATGGAATTGCCGGAGCACTACCTGGATCACTTCAAGCTGTACGACCCCGTCGGCG]
[+] EMBL AK101978             [                                       CTCGCCGTCGTCGCTCGCTGCCCATTTCATCCCCCGCACGGCACGCGCGGGACGAAAGCAAAGCACGCGCACACACTCAAACCCGCGCCTCCTCCGCTCTCGTCCGTCGCTTCGGTTCGGTTCCGGCTCGATCGGGGAGGTTCCTCGGGGCGACCATGTCGTCGGCCGTCGTCGCGTCATCCACCACGTTCCTCGTCGCGCTCGCCTCTTCGGCGTCACGGGGAGGGCCCAGGAGGGGGAGGGTGGTGGGCGTGGCCGCGCCGCCGGCCCTGCTTTACGACGGCCGCGCCGGAAGGCTAGCCCTACGGGCGCCGCCTCCGCCCCGGCCTCGGCCTCGGCGTCGGGATGCGGGCGTGGTGCGCCGCGCGGATGATGGGGAGAACGAGGCGGCGGTGGAGCGGGCGGGTGAGGACGACGACGAGGAGGAGGAGTTCTCTTCGGGCGCGTGGCAGCCGCCCCGCTCGCGTCGCGGCGGCGTCGGCAAGGTCTTGAAGCGGAGGGGCACCGTCCCGCCCGTCGGCCGGTACGGCTCCGGCGGTGATGCGGCGAGAGTGCGCGGGGCGGCCGCGCCGGCGCCGGCGCCGACACAGGACGCCGCCTCAAGTAAGAACGGAGCGCTTCTCAGCGGCCGCGACGACGACACACCTGCCTCACGGAACGGATCGGTCGTTACCGGCGCCGACAAGCCTGCCGCCGCCACGCCGCCGGTGACCATAACGAAGCTCCCAGCGCCGGACTCCCCCGTGATCCTTCCATCCGTAGACAAGCCGCAGCCGGAGTTCGTCATCCCAGACGCGACGGCGCCGGCGCCGCCACCGCCCGGTTCAAATCCCAGGTCGTCCGCTCCTCTCCCCAAGCCTGACAATTCGGAATTTGCAGAGGATAAGAGCGCAAAAGTTGTTGAGAGTGCTCCGAAGCCAAAGGCGACTAGATCTTCCCCTATTCCTGCGGTAGAAGAGGAGACGTGGGATTTCAAGAAATATTTTGATCTGAACGAACCGGACGCCGCGGAGGATGGCGATGACGATGATGACTGGGCTGATTCAGATGCGTCAGATTCTGAGATCGACCAGGATGACGATTCGGGCCCTTTGGCTGGGGAGAATGTCATGAACGTGATCGTGGTGGCTGCTGAATGTTCTCCCTGGTGCAAAACAGGTGGGCTTGGAGATGTTGCAGGTGCTTTACCCAAAGCTTTGGCGAGGAGAGGACATCGTGTTATGGTTGTGGTACCAAGGTACGGTGATTACGCGGAAGCCCAG GATGTAGGAATCAGGAAATACTACAAGGCTGCTGGACAGGATCTGGAAGTGAAATATTTCCATGCATTTATCGATGGAGTTGATTTTGTGTTCATTGACGCTCCTCTCTTCCGTCACCGTCAGGATGACATCTATGGGGGGAACAGACAGGAAATCAT GAAGCGCATGATTCTGTTTTGTAAGGCTGCTGTTGAGGTTCCTTGGCACGTTCCATGCGGTGGTGTGCCCTATGGGGATGGCAACTTGGTGTTCCTTGCAAACGATTGGCACACTGCACTCCTGCCTGTTTATCTGAAGGCATATTACAGAGACAATGGCATGATGCAGTACACTCGCTCTGTCCTTGTGATACATAATATCGCTTACCAGGGCCGTGGCCCAGTAGATGAATTCCCCTACATGGAATTGCCGGAGCACTACCTGGATCACTTCAAGCTGTACGACCCCGTCGGCG]
[+] EMBL C73554               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GCGAGGAGAGGACATCGTGTTATGGTTGTGGTACCAAGGTACGGTGATTACGCGGAA CCCAG GATGTAGGAATCAGGAAATACTACAAGGCTGCTGGACAGGATCTGGAAGTGAAANATTTCCATGCATTTATCGATGGAGTTGATTTTGTGTNCATTNACGCTCCTCTCTTCCGTCACCGTCAGGATGACATCTATGGGGGGNACAGACAGGAAATCATGGANGCGCATGANTCTGTGTTGTAAGGCTGC                                                                                                                                                                                                                                                                          ]
[+] EMBL AA751512             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             cacgaggTCGAGTNATGGTTGTGGNACCNAGGTACGGTGATTACGCGGANGCCCAGTGATGTANGAATCANGAAATACTACAAGGNTGCTGGACNGGATCTGGAATTGAAATATTTCCATGCATTTATCGATGGANTTGATTTTGTGTTCATTGACGCTCCTCTCTTCCGTCACCGTCAGGATGACATCTATGGGGGGAACAGACAGGAAATCAT GAAGCGCATGATTCTGTTTTGTAAGGCTGCTGTTGAGGTTCCTTGGCACGTTCCATGCGGTGGTGTGCCCTATGGGGATGGCAACTTGGTGTTCCTTGCAAACGATTGGCACACTGCACTCCTGCCTGTTTATCTGAAGGCATATTACAGANACAATGGCATGATGCAGTACACTCGCTCTGTCCTTGTGATACATAATATCGCTTACCAGGGCCGTGGCCCAGTAAATGAATTCCCCTACATGGAATTGCCGGANCACTACCTGGATCACTTCAAGCTGTACGACCCCGTCGGCG]


>consensus_10125#0 TTACAGGTGGCTCCCCCGCCGTCTCCCCCGCGTGCCCTCCTCGCCGTCGTCGCTCGCTGC CCATTTCATCCCCCGCACGGCACGCGCGGGACGAAAGCAAAGCACGCGCACACACTCAAA CCCGCGCCTCCTCCGCTCTCGTCCGTCGCTTCGGTTCGGTTCCGGCTCGATCGGGGAGGT TCCTCGGGGCGACCATGTCGTCGGCCGTCGTCGCGTCATCCACCACGTTCCTCGTCGCGC TCGCCTCTTCGGCGTCACGGGGAGGGCCCAGGAGGGGGAGGGTGGTGGGCGTGGCCGCGC CGCCGGCCCTGCTTTACGACGGCCGCGCCGGAAGGCTAGCCCTACGGGCGCCGCCTCCGC CCCGGCCTCGGCCTCGGCGTCGGGATGCGGGCGTGGTGCGCCGCGCGGATGATGGGGAGA ACGAGGCGGCGGTGGAGCGGGCGGGTGAGGACGACGACGAGGAGGAGGAGTTCTCTTCGG GCGCGTGGCAGCCGCCCCGCTCGCGTCGCGGCGGCGTCGGCAAGGTCTTGAAGCGGAGGG GCACCGTCCCGCCCGTCGGCCGGTACGGCTCCGGCGGTGATGCGGCGAGAGTGCGCGGGG CGGCCGCGCCGGCGCCGGCGCCGACACAGGACGCCGCCTCAAGTAAGAACGGAGCGCTTC TCAGCGGCCGCGACGACGACACACCTGCCTCACGGAACGGATCGGTCGTTACCGGCGCCG ACAAGCCTGCCGCCGCCACGCCGCCGGTGACCATAACGAAGCTCCCAGCGCCGGACTCCC CCGTGATCCTTCCATCCGTAGACAAGCCGCAGCCGGAGTTCGTCATCCCAGACGCGACGG CGCCGGCGCCGCCACCGCCCGGTTCAAATCCCAGGTCGTCCGCTCCTCTCCCCAAGCCTG ACAATTCGGAATTTGCAGAGGATAAGAGCGCAAAAGTTGTTGAGAGTGCTCCGAAGCCAA AGGCGACTAGATCTTCCCCTATTCCTGCGGTAGAAGAGGAGACGTGGGATTTCAAGAAAT ATTTTGATCTGAACGAACCGGACGCCGCGGAGGATGGCGATGACGATGATGACTGGGCTG ATTCAGATGCGTCAGATTCTGAGATCGACCAGGATGACGATTCGGGCCCTTTGGCTGGGG AGAATGTCATGAACGTGATCGTGGTGGCTGCTGAATGTTCTCCCTGGTGCAAAACAGGTG GGCTTGGAGATGTTGCAGGTGCTTTACCCAAAGCTTTGGCGAGGAGAGGACATCGTGTTA TGGTTGTGGTACCAAGGTACGGTGATTACGCGGAAGCCCAGGATGTAGGAATCAGGAAAT ACTACAAGGCTGCTGGACAGGATCTGGAAGTGAAATATTTCCATGCATTTATCGATGGAG TTGATTTTGTGTTCATTGACGCTCCTCTCTTCCGTCACCGTCAGGATGACATCTATGGGG GGAACAGACAGGAAATCATGAAGCGCATGATTCTGTTTTGTAAGGCTGCTGTTGAGGTTC CTTGGCACGTTCCATGCGGTGGTGTGCCCTATGGGGATGGCAACTTGGTGTTCCTTGCAA ACGATTGGCACACTGCACTCCTGCCTGTTTATCTGAAGGCATATTACAGAGACAATGGCA TGATGCAGTACACTCGCTCTGTCCTTGTGATACATAATATCGCTTACCAGGGCCGTGGCC CAGTAGATGAATTCCCCTACATGGAATTGCCGGAGCACTACCTGGATCACTTCAAGCTGT ACGACCCCGTCGGCG



consensusID : consensus_10125#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence
                              [GAGAACATCTTTACCTTTGATTAACTTTATCGAAAAATTTAACAGCATCTATAACATCAAATTAGTTTAATTAAATATAATGTTTAATGTAATTTGATTATATGTTTGTTTTGTATTGGAAATGTTATTGTATTTTTCTATAAACTAATTAAATTTAAAACTGTTTAACTTAAAAAAATATCAAAACAATTTACAATATGAAACGGGCCGGGGAGTACTTTTTTTGTGTGCTAAATGGTTCGTGTAATGTTTGTAGGGCCGTGGCCCANTAAATGAATTCCCCTACNTGGAATTGCCGGAGCACTACCTGGATCACTTCAAGCTGTACGACCCCGTCGGCG]

[+] EMBL AA751621             [GAGAACATCTTTACCTTTGATTAACTTTATCGAAAAATTTAACAGCATCTATAACATCAAATTAGTTTAATTAAATATAATGTTTAATGTAATTTGATTATATGTTTGTTTTGTATTGGAAATGTTATTGTATTTTTCTATAAACTAATTAAATTTAAAACTGTTTAACTTAAAAAAATATCAAAACAATTTACAATATGAAACGGGCCGGGGAGTACTTTTTTTGTGTGCTAAATGGTTCGTGTAATGTTTGTAGGGCCGTGGCCCANTAAATGAATTCCCCTACNTGGAATTGCCGGAGCACTACCTGGATCACTTCAAGCTGTACGACCCCGTCGGCG]


>consensus_10125#1 GAGAACATCTTTACCTTTGATTAACTTTATCGAAAAATTTAACAGCATCTATAACATCAA ATTAGTTTAATTAAATATAATGTTTAATGTAATTTGATTATATGTTTGTTTTGTATTGGA AATGTTATTGTATTTTTCTATAAACTAATTAAATTTAAAACTGTTTAACTTAAAAAAATA TCAAAACAATTTACAATATGAAACGGGCCGGGGAGTACTTTTTTTGTGTGCTAAATGGTT CGTGTAATGTTTGTAGGGCCGTGGCCCANTAAATGAATTCCCCTACNTGGAATTGCCGGA GCACTACCTGGATCACTTCAAGCTGTACGACCCCGTCGGCG



consensusID : consensus_10125#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence
                              [ATGAAGCGCATGATTCTGTTTTGTAAGGNTGCTGTTGAGGTTCCTTGGNANGTTCCATGNGGNGGTGTGCCCTATGGGGATGGCAACTTGGTGTTCCTTGCAAANGATTGGCACACTGCACTCCTGNCTGTTTATCTGAAGGNATATTACAGAGACAATGGCATGATGCAGTACACTNGCTCTGTCCTTGTGATACATAATATNGCTTACCAGGGCNGNGGCNCAGTAGATGGAATTCCCCTACATGGGAATTGNCGGAGCANTNACCTGGATACACTTCAAGCTGATACGANCCCGT]

[+] EMBL AA751702             [ATGAAGCGCATGATTCTGTTTTGTAAGGNTGCTGTTGAGGTTCCTTGGNANGTTCCATGNGGNGGTGTGCCCTATGGGGATGGCAACTTGGTGTTCCTTGCAAANGATTGGCACACTGCACTCCTGNCTGTTTATCTGAAGGNATATTACAGAGACAATGGCATGATGCAGTACACTNGCTCTGTCCTTGTGATACATAATATNGCTTACCAGGGCNGNGGCNCAGTAGATGGAATTCCCCTACATGGGAATTGNCGGAGCANTNACCTGGATACACTTCAAGCTGATACGANCCCGT]


>consensus_10125#2 ATGAAGCGCATGATTCTGTTTTGTAAGGNTGCTGTTGAGGTTCCTTGGNANGTTCCATGN GGNGGTGTGCCCTATGGGGATGGCAACTTGGTGTTCCTTGCAAANGATTGGCACACTGCA CTCCTGNCTGTTTATCTGAAGGNATATTACAGAGACAATGGCATGATGCAGTACACTNGC TCTGTCCTTGTGATACATAATATNGCTTACCAGGGCNGNGGCNCAGTAGATGGAATTCCC CTACATGGGAATTGNCGGAGCANTNACCTGGATACACTTCAAGCTGATACGANCCCGT



consensusID : consensus_10125#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence
                              [CNGNGGGTGNGNNAGCTGGTGGTAGNGANCAGGNTNGNGGNCGTNTGGTGNTTCCTGTGCAAACGATTGGCACACTGCACTCCTGCCTGTTTATCTGAAGGCATATTACAGAGACAATGGCATGATGCAGTACACTCGNTCTGTCCTTGTGATACATAATATCGCTTACCAGGGCCGTGCANATNAGATGAATTCCCCTACATGGAATTNCCGGAGCACTACCTGGGATCACTTCAAGCTGTACGACCCCGTGGGCGGCGAGCACGCAAACATCTTCGGCGCGGGCTTNAAGATGG]

[+] EMBL OSC461               [CNGNGGGTGNGNNAGCTGGTGGTAGNGANCAGGNTNGNGGNCGTNTGGTGNTTCCTGTGCAAACGATTGGCACACTGCACTCCTGCCTGTTTATCTGAAGGCATATTACAGAGACAATGGCATGATGCAGTACACTCGNTCTGTCCTTGTGATACATAATATCGCTTACCAGGGCCGTGCANATNAGATGAATTCCCCTACATGGAATTNCCGGAGCACTACCTGGGATCACTTCAAGCTGTACGACCCCGTGGGCGGCGAGCACGCAAACATCTTCGGCGCGGGCTTNAAGATGG]


>consensus_10125#3 CNGNGGGTGNGNNAGCTGGTGGTAGNGANCAGGNTNGNGGNCGTNTGGTGNTTCCTGTGC AAACGATTGGCACACTGCACTCCTGCCTGTTTATCTGAAGGCATATTACAGAGACAATGG CATGATGCAGTACACTCGNTCTGTCCTTGTGATACATAATATCGCTTACCAGGGCCGTGC ANATNAGATGAATTCCCCTACATGGAATTNCCGGAGCACTACCTGGGATCACTTCAAGCT GTACGACCCCGTGGGCGGCGAGCACGCAAACATCTTCGGCGCGGGCTTNAAGATGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10125#0      TTACAGGTGGCTCCCCCGCCGTCTCCCCCGCGTGCCCTCCTCGCCGTCGTCGCTCGCTGC 60
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      CCATTTCATCCCCCGCACGGCACGCGCGGGACGAAAGCAAAGCACGCGCACACACTCAAA 120
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      CCCGCGCCTCCTCCGCTCTCGTCCGTCGCTTCGGTTCGGTTCCGGCTCGATCGGGGAGGT 180
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      TCCTCGGGGCGACCATGTCGTCGGCCGTCGTCGCGTCATCCACCACGTTCCTCGTCGCGC 240
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      TCGCCTCTTCGGCGTCACGGGGAGGGCCCAGGAGGGGGAGGGTGGTGGGCGTGGCCGCGC 300
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      CGCCGGCCCTGCTTTACGACGGCCGCGCCGGAAGGCTAGCCCTACGGGCGCCGCCTCCGC 360
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      CCCGGCCTCGGCCTCGGCGTCGGGATGCGGGCGTGGTGCGCCGCGCGGATGATGGGGAGA 420
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      ACGAGGCGGCGGTGGAGCGGGCGGGTGAGGACGACGACGAGGAGGAGGAGTTCTCTTCGG 480
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      GCGCGTGGCAGCCGCCCCGCTCGCGTCGCGGCGGCGTCGGCAAGGTCTTGAAGCGGAGGG 540
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      GCACCGTCCCGCCCGTCGGCCGGTACGGCTCCGGCGGTGATGCGGCGAGAGTGCGCGGGG 600
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      CGGCCGCGCCGGCGCCGGCGCCGACACAGGACGCCGCCTCAAGTAAGAACGGAGCGCTTC 660
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      TCAGCGGCCGCGACGACGACACACCTGCCTCACGGAACGGATCGGTCGTTACCGGCGCCG 720
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      ACAAGCCTGCCGCCGCCACGCCGCCGGTGACCATAACGAAGCTCCCAGCGCCGGACTCCC 780
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      CCGTGATCCTTCCATCCGTAGACAAGCCGCAGCCGGAGTTCGTCATCCCAGACGCGACGG 840
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      CGCCGGCGCCGCCACCGCCCGGTTCAAATCCCAGGTCGTCCGCTCCTCTCCCCAAGCCTG 900
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      ACAATTCGGAATTTGCAGAGGATAAGAGCGCAAAAGTTGTTGAGAGTGCTCCGAAGCCAA 960
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      AGGCGACTAGATCTTCCCCTATTCCTGCGGTAGAAGAGGAGACGTGGGATTTCAAGAAAT 1020
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      ATTTTGATCTGAACGAACCGGACGCCGCGGAGGATGGCGATGACGATGATGACTGGGCTG 1080
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      ATTCAGATGCGTCAGATTCTGAGATCGACCAGGATGACGATTCGGGCCCTTTGGCTGGGG 1140
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      AGAATGTCATGAACGTGATCGTGGTGGCTGCTGAATGTTCTCCCTGGTGCAAAACAGGTG 1200
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      GGCTTGGAGATGTTGCAGGTGCTTTACCCAAAGCTTTGGCGAGGAGAGGACATCGTGTTA 1260
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      TGGTTGTGGTACCAAGGTACGGTGATTACGCGGAAGCCCAGGATGTAGGAATCAGGAAAT 1320
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      ACTACAAGGCTGCTGGACAGGATCTGGAAGTGAAATATTTCCATGCATTTATCGATGGAG 1380
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      ------------------------------------------------------------
                                                                                   

consensus_10125#0      TTGATTTTGTGTTCATTGACGCTCCTCTCTTCCGTCACCGTCAGGATGACATCTATGGGG 1440
consensus_10125#2      ------------------------------------------------------------
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      --------------------------------------GAGAACATCTTTACCTTTGATT 22
                                                                                   

consensus_10125#0      GGAACAGACAGGAAATCATGAAGCGCATGATTCTGTTTTGTAAGGCTGCTGTTGAGGTTC 1500
consensus_10125#2      -----------------ATGAAGCGCATGATTCTGTTTTGTAAGGNTGCTGTTGAGGTTC 43
consensus_10125#3      ------------------------------------------------------------
consensus_10125#1      AACTTTATCGAAAAATTTAACAGCATCTATAACATCAAATTAGTTTAATTAAATATAATG 82
                                                                                   

consensus_10125#0      CTTGGCACGTTCCATGCGGTGGTGTGCCCTATGGGGATGGCAACTTGGTGTTCCTTG--C 1558
consensus_10125#2      CTTGGNANGTTCCATGNGGNGGTGTGCCCTATGGGGATGGCAACTTGGTGTTCCTTG--C 101
consensus_10125#3      CNGNGGGTGNGNNAGCTGGTGGTAGNGANCAGGNTNGNGGNCGTNTGGTGNTTCCTGTGC 60
consensus_10125#1      TTTAATGTAATTTGATTATATGTTTGTTTTGTATTGGAAATGTTATTGTATTTTTCT-AT 141
                                            **                      * **  *        

consensus_10125#0      AAACGATTGGCACACTGCACT-CCTGCCT---GTTTATCTGAAGGCATATTACAGAGACA 1614
consensus_10125#2      AAANGATTGGCACACTGCACT-CCTGNCT---GTTTATCTGAAGGNATATTACAGAGACA 157
consensus_10125#3      AAACGATTGGCACACTGCACT-CCTGCCT---GTTTATCTGAAGGCATATTACAGAGACA 116
consensus_10125#1      AAACTAATTAAATTTAAAACTGTTTAACTTAAAAAAATATCAAAACAATTTACAATATGA 201
                       ***  * *   *      ***   *  **       ** * **   *  *****     *

consensus_10125#0      ATGGCATGATGCAGTACACTCGCTCTGTCCTTG-TGATACATAATATCGCTTACCAGGGC 1673
consensus_10125#2      ATGGCATGATGCAGTACACTNGCTCTGTCCTTG-TGATACATAATATNGCTTACCAGGGC 216
consensus_10125#3      ATGGCATGATGCAGTACACTCGNTCTGTCCTTG-TGATACATAATATCGCTTACCAGGGC 175
consensus_10125#1      AACGGGCCGGGGAGTACTTTTTTTGTGTGCTAAATGGTTCGTG-TAATGTTTGT-AGGGC 259
                       *  *      * *****  *   * *** **   ** * * *  **  * **   *****

consensus_10125#0      CGTGGCCCAGTAGATG-AATTCCCCTACATGG-AATTGCCGGAGCACTA-CCTGGAT-CA 1729
consensus_10125#2      NGNGGCNCAGTAGATGGAATTCCCCTACATGGGAATTGNCGGAGCANTNACCTGGATACA 276
consensus_10125#3      CGTG-CANATNAGATG-AATTCCCCTACATGG-AATTNCCGGAGCACTA-CCTGGGATCA 231
consensus_10125#1      CGTGGCCCANTAAATG-AATTCCCCTACNTGG-AATTGCCGGAGCACTA-CCTGGAT-CA 315
                        * * *  *  * *** *********** *** ****  ******* *  *****   **

consensus_10125#0      CTTCAAGCTG-TACGACCCCGTCGGCG--------------------------------- 1755
consensus_10125#2      CTTCAAGCTGATACGANCCCGT-------------------------------------- 298
consensus_10125#3      CTTCAAGCTG-TACGACCCCGTGGGCGGCGAGCACGCAAACATCTTCGGCGCGGGCTTNA 290
consensus_10125#1      CTTCAAGCTG-TACGACCCCGTCGGCG--------------------------------- 341
                       ********** ***** *****                                      

consensus_10125#0      ------
consensus_10125#2      ------
consensus_10125#3      AGATGG 296
consensus_10125#1      ------
                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)