These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10141#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1120 fasta sequence [TCCCGAACCCGAACCCGCACCCGCCTCGCTCGCACGCTGCCTCCTCCTCGTCGTCCTCCTCCTCCTCGCTGCTCCGCAAGTCCGCATCGCCTCCCCCCTCGATCCCATCTCGGATCGCCGCCGCCGCAGCAGCAGCCGGGTGGGGCTGCGCTTGGCGGGAGGGAGGGGAGGGTATAGGATAGGGGAGATGGGCGGGGCGGTCTCCGGCGGCGGCGCGGGGGCGGCGGGGGCGGGGGCGGGGGCGGAGGGGGAAGGGGCGTACACGGTGGTGCTGAATGTGTACGACCTCACGCCGCTCAACAACTACCTCCACTGGTGCGGCCTCGGGATCTTCCACTCCGCCGTCGAGGTCCATGGATCGGAGTACAGTTTTGGAGCTCATGATCACCCAACGAGTGGGGTTTTTGAGGTGGAACCAAAGTGCTGCCCAGGGTTCATGTACAGATGTTCAATTTTCATAGGCCGTACGAGTTTGAATCCCTTAGAATTTCGAGATTTCATTCAGAGAATGGCTTCAGAATACCATGGAGATACTTATCACCTCATTTCCAAAAACTGTAACCACTTTACGGATGATCTC-AGTACCAGA-TTG-ACAGGAAAA-CCGATTCCTGGCTGGGTTAACCGACTTGCGAAGCTAGGTGCCTTTTGCAACTGCCTTCTGCCAGAAAGCATGCGGTTGGAGTCAACTGGGACAAAGCACCTCGCGGACTGTCATTTCTCAGATGATTCCCACACATCCAGCAATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGCACCTGCTTTCACAATCTTCTGTTTCTGAAGATGCAATTGTAAAGGAAGTTCACAGGTGACAAACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTGTAATTCTGTATTCCAAAATTTAGTGCGCTCTTTGTATTCTAAGTTGATATTCATATTATTGTGGCCGGTTTATTGTCATGATTGATTTTGTTCATTCCATTTGTACAAACACTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCT-TAAATTCGTTTC-TTGTAAAAATGTGAGTTCAAAGAGCG] [+] EMBL AK103575 [TCCCGAACCCGAACCCGCACCCGCCTCGCTCGCACGCTGCCTCCTCCTCGTCGTCCTCCTCCTCCTCGCTGCTCCGCAAGTCCGCATCGCCTCCCCCCTCGATCCCATCTCGGATCGCCGCCGCCGCAGCAGCAGCCGGGTGGGGCTGCGCTTGGCGGGAGGGAGGGGAGGGTATAGGATAGGGGAGATGGGCGGGGCGGTCTCCGGCGGCGGCGCGGGGGCGGCGGGGGCGGGGGCGGGGGCGGAGGGGGAAGGGGCGTACACGGTGGTGCTGAATGTGTACGACCTCACGCCGCTCAACAACTACCTCCACTGGTGCGGCCTCGGGATCTTCCACTCCGCCGTCGAGGTCCATGGATCGGAGTACAGTTTTGGAGCTCATGATCACCCAACGAGTGGGGTTTTTGAGGTGGAACCAAAGTGCTGCCCAGGGTTCATGTACAGATGTTCAATTTTCATAGGCCGTACGAGTTTGAATCCCTTAGAATTTCGAGATTTCATTCAGAGAATGGCTTCAGAATACCATGGAGATACTTATCACCTCATTTCCAAAAACTGTAACCACTTTACGGATGATCTC AGTACCAGA TTG ACAGGAAAA CCGATTCCTGGCTGGGTTAACCGACCTGCGAAGCTAGGTGCCTTTTGCAACTGCCTTCTGCCAGAAAGCATGCGGTTGGAGTCAACTGGGACAAAGCACCTCGCGGACTGTCATTTCTCAGATGATTCCCGCACATCCAGCAATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGCACCTGCTTTCACAATCTTCTGTTTCTGAAGATGCAATTGTAAAGGAAGTTCACAGGTGACAAACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTGTAATTCTGTATTCCAAAATTTAGTGCGCTCTTTGTATTCTAAGTTGATATTCATATTATTGTGGCCGGTTTATTGTCATGATTAATTTTGTTCATTCCATTTGTACAAACACTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCT TAAATT ] [+] EMBL AK108074 [ CCGAACCCGAACCCGCACCCGCCTCGCTCGCACGCTGCCTCCTCCTCGTCGTCCTCCTCCTCCTCGCTGCTCCGCAAGTCCGCATCGCCTCCCCCCTCGATCCCATCTCGGATCGCCGCCGCCGCAGCAGCAGCCGGGTGGGGCTGCGCTTGGCGGGAGGGAGGGGAGGGTATAGGATAGGGGAGATGGGCGGGGCGGTCTCCGGCGGCGGCGCGGGGGCGGCGGGGGCGGGGGCGGGGGCGGAGGGGGAAGGGGCGTACACGGTGGTGCTGAATGTGTACGACCTCACGCCGCTCAACAACTACCTCCACTGGTGCGGCCTCGGGATCTTCCACTCCGCCGTCGAGGTCCATGGATCGGAGTACAGTTTTGGAGCTCATGATCACCCAACGAGTGGGGTTTTTGAGGTGGAACCAAAGTGCTGCCCAGGGTTCATGTACAGATGTTCAATTTTCATAGGCCGTACGAGTTTGAATCCCTTAGAATTTCGAGATTTCATTCAGAGAATGGCTTCAGAATACCATGGAGATACTTATCACCTCATTTCCAAAAACTGTAACCACTTTACGGATGATCTC AGTACCAGA TTG ACAGGAAAA CCGATTCCTGGCTGGGTTAACCGACCTGCGAAGCTAGGTGCCTTTTGCAACTGCCTTCTGCCAGAAAGCATGCGGTTGGAGTCAACTGGGACAAAGCACCTCGCGGACTGTCATTTCTCAGATGATTCCCGCACATCCAGCAATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGCACCTGCTTTCACAATCTTCTGTTTCTGAAGATGCAATTGTAAAGGAAGTTCACAGGTGACAAACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTGTAATTCTGTATTCCAAAATTTAGTGCGCTCTTTGTATTCTAAGTTGATATTCATATTATTGTGGCCGGTTTATTGTCATGATTAATTTTGTTCATTCCATTTGTACAAACACTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCT TAAATTCGTTTC TTGTAAAAATGTGAGTTCAAAGAGCG] [+] EMBL BI803338 [ AATGGCTTCAGAATACCATGGAGATACTTATCACCTCATTTCC AAAACTGTAACCACTTTACGGATGATCTCAAGTACCAGA TTG ACAGGAAAA CCGATTCCTGGCTGGGTTAACCGACTTGCGAAGCTAGGTGCCTTTTGCAACTGCCTTCTGCCAGAAAGCATGCGGTTGGAGTCAACTGGGACAAAGCACCTCGCGGACTGTCATTTCTCAGATGATTCCCACACATCCAGC ATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGCACCTGCTTTCACAATCTTCTGTTTCTGAAGATGCAATTGTAAAGGAAGTTCACAGGTGACAAACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTGTAATTCTGTATTCCAAAATTTAGTGCGCTCTTTGTATTCTAAGTTGATATTCATATTATTGTGGCCGGTTTATTGTCATGATTGATTTTGTTCATTCCATTTGTAC AAC CTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCG TAAATTCGTTTC TTGTAAAAA ] [+] EMBL BI803952 [ TCACCTCATTTCCAAAAACTGTAACCACTTTACGGATGATCTC AGTACCAGA TTG ACAGGAAAA CCGATTCCTGGCTGGGTTAACCGACTTGCGAAGCTAGGTGCCTTTTGCAACTGCCTTCTGCCAGAAAGCATGCGGTTGGAGTCAACTGGGAC AAGCACCTCGCGGACTGTCATTTCTCAGATGATTCCCACACATCCAGCAATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGCACCTGCTTTCACAATCTTCTGTTTCTGAAGATGCAATTGTAAAGGAAGTTCACAGGTGACAAACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTGTAATTCTGTATTCCAAAATTTAGTGCGCTCTTTGTATTCTAAGTTGATATTCATATTATTGTGGCCGGTTTATTGTCATGATTGATTTTGTTCATTCCATTTGTAC AACACTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCT TAAATTCGTTTC TTGTAAAAA ] [+] EMBL BI804297 [ ACTTTACGGATGATCTC AGTACCAGA TTG ACAGGAAAA CCGATTCCTGGCTGGG TAACCGACTTGCGAAGCTAGGTGCCTTTTGCAACTGCCTTCTGCCAGAAAGCAT CGGTTGGAGTCAACTGGGACAAAGCACCTCGCGGACTGTCATTTCTCAGATGATTCCCACACATCCAGCAATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGCACCTGCTTTCACAATCTTCTGTTTCTGAAGATGCAATTGTAAAGGAAGTTCACAGGTGACAAACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTGTAATTCTGTATTCC AAATTTAGTGCGCTCTTTGTATTCTAAGTTGATATTCATATTATTGTGGCCGGTTTATTGTCATGATTGATTTTGTTCATTCCATTTGTACAAACACTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCTCTAAATTCGTTTCTTTGTAAAAA ] [+] EMBL BI803499 [ cgC AGCACCAGAGTTGAACAGGAAAACCCGATTCCTGGCT GGTTAACCGACTTGCGAAGCTAGGTCCCTTTTGCAACTGCCTTCTGCCAGAAAGCAT CGGTTGGAGTCAACTGGGACAAAGCACCTCGCGGACTGTCATTTCTCAGATGATTCCCACACATCCAGC ATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGCACCTGCTTTCACAATCTTCTGTTTCTGAAGATGC ATTGTAAAGGAAGTTCACAGGTGAC AACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTGTAATTCTGTATTCCAAAATTTAGTGCGCTCTTTGTATTCTAAGTTGATATTCATATTATTGTGGCCGGTTTATTGTCATGATTGATTTTGTTCATTCCATTTGTAC AAC CTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCT TAAATTCGTTTC TTGTAAAAA ] consensusID : consensus_10141#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [TTCCCGGGCCTCTGGGCGCGTGTACACCCGACTTGGCAAAGGCATTAGGGCGCCTTTTGGCAAACTGGCCTTTTCTGCCAAGATAAGCATTGCCGGTTGGGAGTGCAACTTGGGACATAATGCAACCTGCGCGGGACTGGTCCATTTCCTCCTAGATGATTCCCCTACTACTATGCCTACGCCAATGGAGCCATGTCTCTCGAAGATGGCAAGATGCTTGAAGACCAAGCTACCTGGCTGTTGCGACCAATGCTTCTGGTTGTCTGTATAGATGCATATTGGTGAAAGGAAGTCTGCAACAGGTGGACCAAAGCTAGCTCGAGGCTAATGACAAGAATTAATCTTGGTGGTGTAGATTTCGTCAGTGCATGGTTGTACAATGTGTGAATGTCATGTATTCCCGAAATTTGAGTGCGCTCTGTTGTGATTGCTAAGCTGTGATATTCATGATTATTGTGGCCGGTTTATTGTCATGATTGATTTTCGTTGCATTCCATTTGTACAAACCCTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGCTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCTTAAATTCGTTTCTTGTAAAAA] [+] EMBL BI803118 [TTCCCGGGCCTCTGGGCGCGTGTACACCCGACTTGGCAAAGGCATTAGGGCGCCTTTTGGCAAACTGGCCTTTTCTGCCAAGATAAGCATTGCCGGTTGGGAGTGCAACTTGGGACATAATGCAACCTGCGCGGGACTGGTCCATTTCCTCCTAGATGATTCCCCTACTACTATGCCTACGCCAATGGAGCCATGTCTCTCGAAGATGGCAAGATGCTTGAAGACCAAGCTACCTGGCTGTTGCGACCAATGCTTCTGGTTGTCTGTATAGATGCATATTGGTGAAAGGAAGTCTGCAACAGGTGGACCAAAGCTAGCTCGAGGCTAATGACAAGAATTAATCTTGGTGGTGTAGATTTCGTCAGTGCATGGTTGTACAATGTGTGAATGTCATGTATTCCCGAAATTTGAGTGCGCTCTGTTGTGATTGCTAAGCTGTGATATTCATGATTATTGTGGCCGGTTTATTGTCATGATTGATTTTCGTTGCATTCCATTTGTACAAACCCTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGCTCTGGAAGTCACTCTGCATGTGTACTCTTAAGTCTTAAATTCGTTTCTTGTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10141#0 TCCCGAACCCGAACCCGCACCCGCCTCGCTCGCACGCTGCCTCCTCCTCGTCGTCCTCCT 60 consensus_10141#1 ------------------------------------------------------------ consensus_10141#0 CCTCCTCGCTGCTCCGCAAGTCCGCATCGCCTCCCCCCTCGATCCCATCTCGGATCGCCG 120 consensus_10141#1 ------------------------------------------------------------ consensus_10141#0 CCGCCGCAGCAGCAGCCGGGTGGGGCTGCGCTTGGCGGGAGGGAGGGGAGGGTATAGGAT 180 consensus_10141#1 ------------------------------------------------------------ consensus_10141#0 AGGGGAGATGGGCGGGGCGGTCTCCGGCGGCGGCGCGGGGGCGGCGGGGGCGGGGGCGGG 240 consensus_10141#1 ------------------------------------------------------------ consensus_10141#0 GGCGGAGGGGGAAGGGGCGTACACGGTGGTGCTGAATGTGTACGACCTCACGCCGCTCAA 300 consensus_10141#1 ------------------------------------------------------------ consensus_10141#0 CAACTACCTCCACTGGTGCGGCCTCGGGATCTTCCACTCCGCCGTCGAGGTCCATGGATC 360 consensus_10141#1 ------------------------------------------------------------ consensus_10141#0 GGAGTACAGTTTTGGAGCTCATGATCACCCAACGAGTGGGGTTTTTGAGGTGGAACCAAA 420 consensus_10141#1 ------------------------------------------------------------ consensus_10141#0 GTGCTGCCCAGGGTTCATGTACAGATGTTCAATTTTCATAGGCCGTACGAGTTTGAATCC 480 consensus_10141#1 -------------------------------------------------TTCCCGGGCCT 11 * * consensus_10141#0 CTTAGAATTTCGAGATTTCATTCAGAGAATGGCTTCAGAATACCATGGAGATACTTATCA 540 consensus_10141#1 CTGGGCGCGTGTACACCCGACTTGGCAAA-GGCATTAGGGCGCCTTTTGGCAAACTG--G 68 ** * * * * * * * ** *** * ** ** * * * * consensus_10141#0 CCTCATTTCCAAAAACTGTAACCACTTTACGGATGATCTCAGTACCAGATTGACAGGAAA 600 consensus_10141#1 CCTTTTCTGCCAAGA---TAAGCATTGC-CGGTTGGGAGTGCAACTTGGGACATAATGCA 124 *** * * * ** * *** ** * *** ** ** * * * * consensus_10141#0 ACCGATTCCTGGCTGGGTTAACCGACTTGCGAAGCTAGGTGCCTTTTGCAACTGCCTTCT 660 consensus_10141#1 ACCTGCGCGGGACTGGTCCATTT--CCTCCTAGATGATTCCCCTACTACTA-TGCCTAC- 180 *** * * **** * * * * * * *** * * * ***** * consensus_10141#0 GCCAGAAAGCATGCGGTTGGAGTCAACTGGGACAAAGCACCTCGCGGACT-GTCATTTCT 719 consensus_10141#1 GCCAATGGAGCCATGTCTC---TCGAAGATGGCAAGATGCTTGAAGACCAAGCTACCTGG 237 **** * * ** * * *** * * * * * * * consensus_10141#0 CAGATGATTCCCACACATCCAGCAATGAGCATTTTGAAGATGAAGATCTTGAAGACAAGC 779 consensus_10141#1 CTGTTGCGACCAATGCTTCTGGTTGTCTGTAT-----AGATGCATA--TTGGTGAAAGGA 290 * * ** ** * * ** * * * ** ***** * * *** ** * * consensus_10141#0 ACCTGCTTTCACAATCTTCTGTTTCTGAAGATGCAATTGTAAAGGAAGTTCACAGGTGAC 839 consensus_10141#1 AG---------------TCTGCAACAGGTGGACCAAAGCTAGCTCGAGGCTAATGACAAG 335 * **** * * * *** ** ** * * * consensus_10141#0 AAACTGCTGAGGCTATACAGAATAATTTGGTGTGTAGTTTGTCATTCATTTTGTACATTG 899 consensus_10141#1 AATTAATCTTGGTGGTGTAGATTTCGTCAGTGCATGGTT----GTACAATGTGTGAAT-- 389 ** ** * *** * * *** * *** * ** * *** ** consensus_10141#0 TAATTCTGTATTCC--AAAATTTAGTGCGCTCT-TTGTATT--CTAAGTTG--ATATTCA 952 consensus_10141#1 --GTCATGTATTCCCGAAATTTGAGTGCGCTCTGTTGTGATTGCTAAGCTGTGATATTCA 447 * ******** *** ** ********** **** * ***** ** ******* consensus_10141#0 T-ATTATTGTGGCCGGTTTATTGTCATGATTGATTTT-GTT-CATTCCATTTGTACAAAC 1009 consensus_10141#1 TGATTATTGTGGCCGGTTTATTGTCATGATTGATTTTCGTTGCATTCCATTTGTACAAAC 507 * *********************************** *** ****************** consensus_10141#0 ACTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAG-TCTGGAAGTCACTCTGCATGT 1068 consensus_10141#1 CCTGTAATACCCTACCTACTGAGGCTCCTTATAGGTAGCTCTGGAAGTCACTCTGCATGT 567 ************************************* ********************* consensus_10141#0 GTACTCTTAAGTCTTAAATTCGTTTCTTGTAAAAATGTGAGTTCAAAGAGCG 1120 consensus_10141#1 GTACTCTTAAGTCTTAAATTCGTTTCTTGTAAAAA----------------- 602 *********************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||