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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1060 fasta sequence
[TCCTCTCAAAAAGGATGGTCCGGTGCATGATGTGCAGTGGTCTTACTCAGGTTCAGAATTTGCTGTGGTCTATGGATTTATGCCGGCCAGAGCAACAATATTCAACAAAAAATGCAACCCTCTTCTGGAGCTTTTTTAAGGCCCCTACAATACAATAAGATGGAACCCAAAAGGGCGATTTATCGTTTTAGCAGGGTTTGGTAATTTGCCTGGTGACATGGCATTCTGGGATTATTCAGAAAAGAAATTGGTAGGAAAAACAAAGGCTGAATGTTCTGTTACGAGTGAATGGTCCCCTGATGGTCGCCATTTTATGACTGCTACAACAGCTCCGAGACTCCAAATAGACAACGGGATTAAAATATTTGACCACAATGGATCTCTGCAGTTCAAGAAGATGTTTGAAAAGCTGTATCAGGCTGACTGGAAGCCAGAAGCGCCTGAAAAATTTAGTGACATTGCCGACCTCACGATATCGTTGGGTAGCATAAAAATTGAAGAAACGAAAAAACAAGTTTCAGCACAGGGTTCTAAATCAGCACA-ACCATCAAGCAAGGCCC-CTGCAAATATAGCAGCGAAACCTAC-AGCATATCGACCACCTCATTCAAAGAATTCTGCAGATGTTCAGGATAAGCTTTTTGGTGGGCTTGCTTCTACGGGAGGAGAGATGAGCAAAAATGCACTGAGAAATAAGAAGCGCAGAGAGAAACAGAAGGAGAAGAAGGCTGCTGAAGGATCCGGAGCCTCTGCTGATGACAATTAAATCCACTTCTACTCAGTGAAATGGTGTCTCAATCCAGAAAAATGGCATTTTGCCATTTGAAATGTAATCACGCGAATATGCTGTCAAAGTAACACTGCCTGGGAAACTGTCCTTGATTCCGCGCGATTAATGCACCCTGCTTCTTAGATCTGTTGTTTCTTGAAACAAGAACGGCTCGAAATTTTGATAGTTTTTGAAGTTTGAACTGATGGTTTGTATGACAAAACCAAAAGATACTATCAAAGCTA-TCCATTCATTTCGTTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF306185 [TCCTCTCAAAAAGGATGGTCCGGTGCATGATGTGCAGTGGTCTTACTCAGGTTCAGAATTTGCTGTGGTCTATGGATTTATGCCGGCCAGAGCAACAATATTCAACAAAAAATGCAACCCTCTTCTGGAGCTTTTTTAAGGCCCCTACAATACAATAAGATGGAACCCAAAAGGGCGATTTATCGTTTTAGCAGGGTTTGGTAATTTGCCTGGTGACATGGCATTCTGGGATTATTCAGAAAAGAAATTGGTAGGAAAAACAAAGGCTGAATGTTCTGTTACGAGTGAATGGTCCCCTGATGGTCGCCATTTTATGACTGCTACAACAGCTCCGAGACTCCAAATAGACAACGGGATTAAAATATTTGACCACAATGGATCTCTGCAGTTCAAGAAGATGTTTGAAAAGCTGTATCAGGCTGACTGGAAGCCAGAAGCGCCTGAAAAATTTAGTGACATTGCCGACCTCACGATATCGTTGGGTAGCATAAAAATTGAAGAAACGAAAAAACAAGTTTCAGCACAGGGTTCTAAATCAGCACA ACCATCAAGCAAGGCCC CTGCAAATATAGCAGCGAAACCTAC AGCATATCGACCACCTCATTCAAAGAATTCTGCAGATGTTCAGGATAAGCTTTTTGGTGGGCT ]
[+] EMBL BM037824 [ ttatgtccGATGGTC CCATGTTATGACTTCTACCA GGCTCCGAG CTCC CATAGCC CGGGATTTAAATATTTGACCACGATGGATCTCTGCAG TCAAAAAGA TTTGAAAA CTGTATCA GCTGACTGGAACCAAGAAGCGCCTGAAAAATTTAGTGACATT CCGACCTCACGATATC TTGGGTAGCATAAAAATTGAAGAAACGAAAAAACAAGTTTCAGCACAGGGTTCTAAATCAGCACATACCATCAAGCAAGGCCCACT CAAATATAGCAGCGAAACCTACAAGCATATCGACCACCTCATTCAAAGAATTCTGCAGATGTTCAGGATAAGCTTTTTGGTGGGCTTGCTTCTACGGGAGGAGAGATGA CCAAAATGCACTGAGAAATAAGAAGC CAGAGAGAAACNGAAGGAGAAGAAGGCTGCTGAAGGATCCGGAGCCTCTGCTGATGACAATTAAATCCACTTCTACTCAGTGAAATGGTGTCTC ATCCAGAAAAATGGCATTTTGCCATTTGAAATGTAATCACGCGAATATGCTGTCAAAGTAAC CTGCCTGGGAAACTGTCCTTGATTCCGCGCGATTAATGCACCCTGCTTCTTAGAaaaaaaaaa ]
[+] EMBL BE039597 [ AATTTAGTGACATTGCCGACCTCACGATATCGTTGGGTAGCATAAAAATTGAAGAAACGAAAAAACAAGTTTCAGCACAGGGTTCTAAATCAGCACA ACCATCAAGCAAGGCCC CTGCAAATATAGCAGCGAAACCTAC AGCATATCGACCACCTCATTCAAAGAATTCTGCAGATGTTCAGGATAAGCTTTTTGGTGGGCTTGCTTCTACGGGAGGAGAGATGAGCAAAAATGCACTGAGAAATAAGAAGCGCAGAGAGAAACAGAAGGAGAAGAAGGCTGCTGAAGGATCCGGAGCCTCTGCTGATGACAATTAAATCCACTTCTACTCAGTGAAATGGTGTCTCAATCCAGAAAAATGGCATTTTGCCATTTGAAATGTAATCACGCGAATATGCTGTCAAAGTAACACTGCCTGGGAAACTGTC ]
[-] EMBL CB636510 [ TTGCCGACCTCACGATATCGTTGGGTAGCATAAAAATTGAAGAAACGAAAAAACAAGTTTCAGCACAGGGTTCTAAATCAGCACA ACCATCAAGCAAGGCCC CTGCAAATATAGCAGCGAAACCTAC AGCATATCGACCACCTCATTCAAAGAATTCTGCAGATGTTCAGGATAAGCTTTTTGGTGGGCTTGCTTCTACGGGAGGAGAGATGAGCAAAAATGCACTGAGAAATAAGAAGCGCAGAGAGAAACAGAAGGAGAAGAAGGCTGCTGAAGGATCCGGAGCCTCTGCTGATGACAATTAAATCCACTTCTACTCAGTGAAATGGTGTCTCAATCCAGAAAAATGGCATTTTGCCATTTGAAATGTAATCACGCGAATATGCTGTCAAAGTAACACTGCCTGGGAAACTGTCCTTGATTCCGCGCGATTAATGCACCCTGCTTCTTAGATCTGTTGTTTCTTGAAACAAGAACGGCTCGAAATTTTGATAGTTTTTGAAGTTTGAACTGATGGTTTGTATGACAAAACCAAAAGATACTATCAAAGCTA TCCATTC ]
[+] EMBL AU162342 [ ATGAGCAAAAATGCACTGAGAAATAAGAAGCGCAGAGAGAAACAGAAGGAGAAGAAGGCTGCTGAAGGATCCGGAGCCTCTGCTGATGACAATTAAATCCACTTCTACTCAGTGAAATGGTGTCTCAATCCAGAAAAATGGCATTTTGCCATTTGAAATGTAATCACGCGAATATGCTGTCAAAGTAACACTGCCTGGGAAACTGTCCTTGATTCCGCGCGATTAATGCACCCTGCTTCTTAGATCTGTTGTTTCTTGATACAAGAACGGCTCGAAATTTTGATAGTTTTTGAAGTTTGAACTGATGGTTTGTATGACAAAACCAAAAGATACTATCAAAGCTACTCCTTTCATTTCGTTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[ACAAGAACGGCTCGAAATTTTGATAGTTTTTGAAGTATGAACTGATGGTTTGTATGACAAAACCAAAAGATACTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAAAAAAAAAACAAAGGGCCGCACACATACCCCATTCCCAACAGCTACGCAGTACTGAATTGATAAAGCCCTCAAACACCG]
[+] EMBL CA758219 [ACAAGAACGGCTCGAAATTTTGATAGTTTTTGAAGTATGAACTGATGGTTTGTATGACAAAACCAAAAGATACTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAAAAAAAAAACAAAGGGCCGCACACATACCCCATTCCCAACAGCTACGCAGTACTGAATTGATAAAGCCCTCAAACACCG]
consensusID : consensus_10143#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 98 fasta sequence
[GCAATCAGGCTAACCGCTCGAAATTTTGATAGTTTTTGAAGTTTGAACTGATGGTTTGTATGACACCAAAGATACTATCAAGCTACTCCTTTCAAAAA]
[+] EMBL BI795258 [GCAATCAGGCTAACCGCTCGAAATTTTGATAGTTTTTGAAGTTTGAACTGATGGTTTGTATGACACCAAAGATACTATCAAGCTACTCCTTTCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10143#0 TCCTCTCAAAAAGGATGGTCCGGTGCATGATGTGCAGTGGTCTTACTCAGGTTCAGAATT 60
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 TGCTGTGGTCTATGGATTTATGCCGGCCAGAGCAACAATATTCAACAAAAAATGCAACCC 120
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 TCTTCTGGAGCTTTTTTAAGGCCCCTACAATACAATAAGATGGAACCCAAAAGGGCGATT 180
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 TATCGTTTTAGCAGGGTTTGGTAATTTGCCTGGTGACATGGCATTCTGGGATTATTCAGA 240
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 AAAGAAATTGGTAGGAAAAACAAAGGCTGAATGTTCTGTTACGAGTGAATGGTCCCCTGA 300
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 TGGTCGCCATTTTATGACTGCTACAACAGCTCCGAGACTCCAAATAGACAACGGGATTAA 360
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 AATATTTGACCACAATGGATCTCTGCAGTTCAAGAAGATGTTTGAAAAGCTGTATCAGGC 420
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 TGACTGGAAGCCAGAAGCGCCTGAAAAATTTAGTGACATTGCCGACCTCACGATATCGTT 480
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 GGGTAGCATAAAAATTGAAGAAACGAAAAAACAAGTTTCAGCACAGGGTTCTAAATCAGC 540
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 ACAACCATCAAGCAAGGCCCCTGCAAATATAGCAGCGAAACCTACAGCATATCGACCACC 600
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 TCATTCAAAGAATTCTGCAGATGTTCAGGATAAGCTTTTTGGTGGGCTTGCTTCTACGGG 660
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 AGGAGAGATGAGCAAAAATGCACTGAGAAATAAGAAGCGCAGAGAGAAACAGAAGGAGAA 720
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 GAAGGCTGCTGAAGGATCCGGAGCCTCTGCTGATGACAATTAAATCCACTTCTACTCAGT 780
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 GAAATGGTGTCTCAATCCAGAAAAATGGCATTTTGCCATTTGAAATGTAATCACGCGAAT 840
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 ATGCTGTCAAAGTAACACTGCCTGGGAAACTGTCCTTGATTCCGCGCGATTAATGCACCC 900
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 TGCTTCTTAGATCTGTTGTTTCTTGAAACAAG--AACGGCTCGAAATTTTGATAGTTTTT 958
consensus_10143#2 -----------------------GCAATCAGGCTAACCGCTCGAAATTTTGATAGTTTTT 37
consensus_10143#1 ---------------------------ACAAG--AACGGCTCGAAATTTTGATAGTTTTT 31
** * *** **********************
consensus_10143#0 GAAGTTTGAACTGATGGTTTGTATGACAAAACCAAAAGATACTATCAAAGCTATCCATTC 1018
consensus_10143#2 GAAGTTTGAACTGATGGTTTGTATGACA----CCAAAGATACTATCAAG-----CTACTC 88
consensus_10143#1 GAAGTATGAACTGATGGTTTGTATGACAAAACCAAAAGATACTATCAAAAAAAAAAAAAA 91
***** ********************** * ************** *
consensus_10143#0 ATTTCGTTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------ 1060
consensus_10143#2 CTTTCAAAAA-------------------------------------------------- 98
consensus_10143#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 151
*
consensus_10143#0 ------------------------------------------------------------
consensus_10143#2 ------------------------------------------------------------
consensus_10143#1 AAGATAAAAAAAAAACAAAGGGCCGCACACATACCCCATTCCCAACAGCTACGCAGTACT 211
consensus_10143#0 -------------------------
consensus_10143#2 -------------------------
consensus_10143#1 GAATTGATAAAGCCCTCAAACACCG 236
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||