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Oryza sativa
cluster # 10145 cluster # 10145       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10145#0 length = 2147 sequences # 5  
consensus_10145#1 length = 671 sequences # 1  
consensus_10145#2 length = 347 sequences # 1  

consensusID : consensus_10145#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2147
fasta sequence
                              [TCCCTCTCCTCCCCGTCTTCCTCCCTCTCCCGGTCTCCCCTTCGGTTGCCGCGTCACCACCACCACCACCGGGTCACTGCCACGTGGGCCCCACACCCCCACCTCCGCGACCTCGCGGCCGGTGAGCCGCACTGCGCCTCCCCTCCGCTGGGTACAAACCGAGTGACCGATCTACCACCTCCACCCACCGCCATCCCCCCCAATCCCCCCCACACGCCGCGAGATCTCCCGCCTCCTCCTCCACCCGCCATGGATCTCCTCCGCGACCGCCGCCTCGGCGCGCTGCTGGTGGTGGTGCTGGTGCTGGTGAGCGGCGCGGCGGTGGAGGCGTCGATCCACACCTACGACAGGGAGCCGTTCCGGGAGGTGGGGAACGCGTTCCTCCTCTCCGGGGGCAGCGAGGGCGTCGTCGCCGACGGGGCCGACCTCGCCGCCCCCGCCTCCTCCTTCATCAAGTTCACGAATGTTACTTTCTGGAGAACTCCGGAATCAGCTGAATCACATGCAAAAATGGCACACAGTACAGGTCTGGTACAGGCCATTTTATTTGAAGCAGCTGACAGGGATAACATTGGGGGATCTGCCTATGGTGGACAGAGGTCCATATGTTGTACCCCTGACCTTGCTAAACTAGAGGGCTGCAAACAAGGGGAAGTAATCAGGAGACCATCCTCTGATGATCCTGATTGGCCTTATGTGCTAGATACACACTTCAGTGGTAGTCACCTTTCTGTGAAGTTAGAAGATGAGGTAGTTCGCATTACCAAGACAGGCATGTACAACTTGTTCTTCATTTCCTGTGATCCAAAACTGAGAGGCCTTAGTATGAGTGGGAAGACAGTCTGGAGGAATCCTGGCGGCTACCTACCAGGGCGGATGGCACCTTTGATGAAATTTTACGTTTTTATGTCACTGGCTTATCTATTGGTCATGGTTGTCTGGTCGAGTCAGTATATAAGATTCTGGAGGGACATCATGCCAATCCAGAATTGGATCACACTAATTATTGCACTTGGCCTTTTTGAGATGACACTATGGTACTTTGAATACTTAAACTTCAACAGTAGTGGTGTACGGCCAATTGGAATCACAACTTGGGTGGTTACTGTTGGAGCCATCAGAAAAACGATTTCTCGCCTATTGATCCTTTCTATCTCAATGGGATATGGTGTTGTCCGCCCAACCCTGGGAGGACTGACCTCTAAGGTGTTGCTCCTTGGGCTGACATATTTCCTGGCTTCTGAATTGCTGGATATTGCAGAAAACGTTGGAACAATTAATGACATTTCTGGGAAAGCAAGGCTTTTCCTAGTTCTTCCTGATGCCTTTTTGGATGCTTTCCTCATACTTTGGATTTTCACTTCTCTCTCCCGCACACTTGAGAAGTTACAGGCTAGGAGGAGCTCAGTAAAGCTGGATATATACAGAAAATTTACTAATGCATTGGCGGTATCTGTAATAGCTTCAGTTGCCTGGATTGGTTATGAGGTCTATTTCAAAGCGACAGATCCCTTTAGTGAGGGGTGGCAGAGCGCATGGATCATAACTGCATTCTGGGACGTTCTTGCATTTGTTTTGCTTCTTGTGATTTGTTATCTATGGGCGCCATCCCAGAGCTCACAAAGATACGCATATTCAGGCGAAGCTGCCGACGACGATGATGAAGAATCTCAATCTCTGACGAAGGGGACCGACGGTGATGTAGGGATGGTAAAGGTTGACAAGGACAGAAGTGGTGGTGTCAGTAGTGCTTTCAGCTTGGAAGACGAGGCTGAGGAGGACAAAAGAGAGTGACCTGCTGGAGCAAGAATGCTCCAAGGTTCCTGAGCTTTCTTCTTCTTTTTGGTGGTGATTTGATCTTCTCTTTTGTACCTTCTCAGTTACACAGGTCATGTAGAAGCGCACCATTTTATCCATTCCTGCGAGGATAGTATGTTCGTGGTGTTCCATGTGGAGTTTCACATAGGCCAGGATGGTGCACATTATTTAAATGACTACACATTCACAACAGTGTACATATCTGTTTTTGTTACCGGTTGTGCATTGCCTGATGTATCATGGTATCATGTATGAAACTGGTGAACGCAGTGTTTGACAGATCTGTTTGCCTAATTGACTGGAAGTTGCAGATGAAAAATAGCCAAAGT]

[+] EMBL AK068611             [TCCCTCTCCTCCCCGTCTTCCTCCCTCTCCCGGTCTCCCCTTCGGTTGCCGCGTCACCACCACCACCACCGGGTCACTGCCACGTGGGCCCCACACCCCCACCTCCGCGACCTCGCGGCCGGTGAGCCGCACTGCGCCTCCCCTCCGCTGGGTACAAACCGAGTGACCGATCTACCACCTCCACCCACCGCCATCCCCCCCAATCCCCCCCACACGCCGCGAGATCTCCCGCCTCCTCCTCCACCCGCCATGGATCTCCTCCGCGACCGCCGCCTCGGCGCGCTGCTGGTGGTGGTGCTGGTGCTGGTGAGCGGCGCGGCGGTGGAGGCGTCGATCCACACCTACGACAGGGAGCCGTTCCGGGAGGTGGGGAACGCGTTCCTCCTCTCCGGGGGCAGCGAGGGCGTCGTCGCCGACGGGGCCGACCTCGCCGCCCCCGCCTCCTCCTTCATCAAGTTCACGAATGTTACTTTCTGGAGAACTCCGGAATCAGCTGAATCACATGCAAAAATGGCACACAGTACAGGTCTGGTACAGGCCATTTTATTTGAAGCAGCTGACAGGGATAACATTGGGGGATCTGCCTATGGTGGACAGAGGTCCATATGTTGTACCCCTGACCTTGCTAAACTAGAGGGCTGCAAACAAGGGGAAGTAATCAGGAGACCATCCTCTGATGATCCTGATTGGCCTTATGTGCTAGATACACACTTCAGTGGTAGTCACCTTTCTGTGAAGTTAGAAGATGAGGTAGTTCGCATTACCAAGACAGGCATGTACAACTTGTTCTTCATTTCCTGTGATCCAAAACTGAGAGGCCTTAGTATGAGTGGGAAGACAGTCTGGAGGAATCCTGGCGGCTACCTACCAGGGCGGATGGCACCTTTGATGAAATTTTACGTTTTTATGTCACTGGCTTATCTATTGGTCATGGTTGTCTGGTCGAGTCAGTATATAAGATTCTGGAGGGACATCATGCCAATCCAGAATTGGATCACACTAATTATTGCACTTGGCCTTTTTGAGATGACACTATGGTACTTTGAATACTTAAACTTCAACAGTAGTGGTGTACGGCCAATTGGAATCACAACTTGGGTGGTTACTGTTGGAGCCATCAGAAAAACGATTTCTCGCCTATTGATCCTTTCTATCTCAATGGGATATGGTGTTGTCCGCCCAACCCTGGGAGGACTGACCTCTAAGGTGTTGCTCCTTGGGCTGACATATTTCCTGGCTTCTGAATTGCTGGATATTGCAGAAAACGTTGGAACAATTAATGACATTTCTGGGAAAGCAAGGCTTTTCCTAGTTCTTCCTGATGCCTTTTTGGATGCTTTCCTCATACTTTGGATTTTCACTTCTCTCTCCCGCACACTTGAGAAGTTACAGGCTAGGAGGAGCTCAGTAAAGCTGGATATATACAGAAAATTTACTAATGCATTGGCGGTATCTGTAATAGCTTCAGTTGCCTGGATTGGTTATGAGGTCTATTTCAAAGCGACAGATCCCTTTAGTGAGGGGTGGCAGAGCGCATGGATCATAACTGCATTCTGGGACGTTCTTGCATTTGTTTTGCTTCTTGTGATTTGTTATCTATGGGCGCCATCCCAGAGCTCACAAAGATACGCATATTCAGGCGAAGCTGCCGACGACGATGATGAAGAATCTCAATCTCTGACGAAGGGGACCGACGGTGATGTAGGGATGGTAAAGGTTGACAAGGACAGAAGTGGTGGTGTCAGTAGTGCTTTCAGCTTGGAAGACGAGGCTGAGGAGGACAAAAGAGAGTGACCTGCTGGAGCAAGAATGCTCCAAGGTTCCTGAGCTTTCTTCTTCTTTTTGGTGGTGATTTGATCTTCTCTTTTGTACCTTCTCAGTTACACAGGTCATGTAGAAGCGCACCATTTTATCCATTCCTGCGAGGATAGTATGTTCGTGGTGTTCCATGTGGAGTTTCACATAGGCCAGGATGGTGCACATTATTTAAATGACTACACATTCACAACAGTGTACATATCTGTTTTTGTTACCGGTTGTGCATTGCCTGATGTATCATGGTATCATGTATGAAACTGGTGAACGCAGTGTTTGACAGATCTGTTTGCCTAATTGACTGGAAGTTGCAGATGAAAAATAGCCAAAGT]
[+] EMBL CB637430             [                                                                                                                                                                                                                         CGGGAGATCTCCCGCCTTCTCCTCCACCCGCCATGGATCTCCTCCGCGACCGCCGCCTCAGCGCGCTGCTGGTGGTGGTGCTGGTGCTGGTGAGCGGCGCGGCGGTGGAGGCGTCGATCCACACCTACGACAGGGAGCCGTTCCGGGAGGTGGGGAACGCGTTCCTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB638976             [                                                                                                                                                                                                                         CGCGAGATCTCCCGCCTCCTCCTCCACCCGCCATGGATCTCCTCCGCGACCGCCGCCTCGGCGCGCTGCTGGTGGTGGTGCTGGTGCTGGTGAGCGGCGCGGCGGTGGAGGCGTCGATCCACACCTACGACATGGAGCCGTTCCGGGAGGTGGGGAACGCGTTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB637014             [                                                                                                                                                                                                                                                                                                                                                                                                                                         CCTCGCCGCCCCCGCCTCCTCCTTCATCAAGTTCACGAATGTTACTTTCTGGAGAACTCCGGAATCAGCTGAATCACATGCAAAAATGGCACACAGTACAGGTCTGGTACAGGCCATTTTATTTGAAGCAGCTGACAGGGATAACATTGGGGGATCTGCCTATGGTGGACAGAGGTCCATATGTTGTACCCCTGACCTTGCTAAACTANAGGGCTGCAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB097199             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTGTTGTCCGCCCAACCCTGGGAGGACTGACCTCTAAGGTGTTGCTCCTTGGGCTGACATATTTCCTGGCTTCTGAATTGCTGGATATTGCAGAAAACGTTGGAACAATTAATGACATTTCTGGGAAAGCAAGGCTTTTCCTAGTTCTTCCTGATGCCTTTTTGGATGCTTTCCTCATACTTTGGATTTTCACTTCTCTCTTCCGCACACTTGAAAAGTTACAGGCTAGGAGGAGCTCAG NAAGCTGGATATTTACAGAAAA TTACTAATGCATTGGCGGGATCTGGAAAACCTT AANTGCCTGGATTGGTT TTNGG CCATTT AAAG GAAAAANCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]


>consensus_10145#0 TCCCTCTCCTCCCCGTCTTCCTCCCTCTCCCGGTCTCCCCTTCGGTTGCCGCGTCACCAC CACCACCACCGGGTCACTGCCACGTGGGCCCCACACCCCCACCTCCGCGACCTCGCGGCC GGTGAGCCGCACTGCGCCTCCCCTCCGCTGGGTACAAACCGAGTGACCGATCTACCACCT CCACCCACCGCCATCCCCCCCAATCCCCCCCACACGCCGCGAGATCTCCCGCCTCCTCCT CCACCCGCCATGGATCTCCTCCGCGACCGCCGCCTCGGCGCGCTGCTGGTGGTGGTGCTG GTGCTGGTGAGCGGCGCGGCGGTGGAGGCGTCGATCCACACCTACGACAGGGAGCCGTTC CGGGAGGTGGGGAACGCGTTCCTCCTCTCCGGGGGCAGCGAGGGCGTCGTCGCCGACGGG GCCGACCTCGCCGCCCCCGCCTCCTCCTTCATCAAGTTCACGAATGTTACTTTCTGGAGA ACTCCGGAATCAGCTGAATCACATGCAAAAATGGCACACAGTACAGGTCTGGTACAGGCC ATTTTATTTGAAGCAGCTGACAGGGATAACATTGGGGGATCTGCCTATGGTGGACAGAGG TCCATATGTTGTACCCCTGACCTTGCTAAACTAGAGGGCTGCAAACAAGGGGAAGTAATC AGGAGACCATCCTCTGATGATCCTGATTGGCCTTATGTGCTAGATACACACTTCAGTGGT AGTCACCTTTCTGTGAAGTTAGAAGATGAGGTAGTTCGCATTACCAAGACAGGCATGTAC AACTTGTTCTTCATTTCCTGTGATCCAAAACTGAGAGGCCTTAGTATGAGTGGGAAGACA GTCTGGAGGAATCCTGGCGGCTACCTACCAGGGCGGATGGCACCTTTGATGAAATTTTAC GTTTTTATGTCACTGGCTTATCTATTGGTCATGGTTGTCTGGTCGAGTCAGTATATAAGA TTCTGGAGGGACATCATGCCAATCCAGAATTGGATCACACTAATTATTGCACTTGGCCTT TTTGAGATGACACTATGGTACTTTGAATACTTAAACTTCAACAGTAGTGGTGTACGGCCA ATTGGAATCACAACTTGGGTGGTTACTGTTGGAGCCATCAGAAAAACGATTTCTCGCCTA TTGATCCTTTCTATCTCAATGGGATATGGTGTTGTCCGCCCAACCCTGGGAGGACTGACC TCTAAGGTGTTGCTCCTTGGGCTGACATATTTCCTGGCTTCTGAATTGCTGGATATTGCA GAAAACGTTGGAACAATTAATGACATTTCTGGGAAAGCAAGGCTTTTCCTAGTTCTTCCT GATGCCTTTTTGGATGCTTTCCTCATACTTTGGATTTTCACTTCTCTCTCCCGCACACTT GAGAAGTTACAGGCTAGGAGGAGCTCAGTAAAGCTGGATATATACAGAAAATTTACTAAT GCATTGGCGGTATCTGTAATAGCTTCAGTTGCCTGGATTGGTTATGAGGTCTATTTCAAA GCGACAGATCCCTTTAGTGAGGGGTGGCAGAGCGCATGGATCATAACTGCATTCTGGGAC GTTCTTGCATTTGTTTTGCTTCTTGTGATTTGTTATCTATGGGCGCCATCCCAGAGCTCA CAAAGATACGCATATTCAGGCGAAGCTGCCGACGACGATGATGAAGAATCTCAATCTCTG ACGAAGGGGACCGACGGTGATGTAGGGATGGTAAAGGTTGACAAGGACAGAAGTGGTGGT GTCAGTAGTGCTTTCAGCTTGGAAGACGAGGCTGAGGAGGACAAAAGAGAGTGACCTGCT GGAGCAAGAATGCTCCAAGGTTCCTGAGCTTTCTTCTTCTTTTTGGTGGTGATTTGATCT TCTCTTTTGTACCTTCTCAGTTACACAGGTCATGTAGAAGCGCACCATTTTATCCATTCC TGCGAGGATAGTATGTTCGTGGTGTTCCATGTGGAGTTTCACATAGGCCAGGATGGTGCA CATTATTTAAATGACTACACATTCACAACAGTGTACATATCTGTTTTTGTTACCGGTTGT GCATTGCCTGATGTATCATGGTATCATGTATGAAACTGGTGAACGCAGTGTTTGACAGAT CTGTTTGCCTAATTGACTGGAAGTTGCAGATGAAAAATAGCCAAAGT



consensusID : consensus_10145#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence
                              [TGCAAAGCGCATGGATAATAACTGCATTTTGGGGCGTTCTTGCCTTGGTCTGCCTCTTGGGATTTGTTATCTATGGGCGCCATCCCAGAGCTCCCAAAGATACGCGTATTCAGGCGAAGCTGCTGACGACGATGATGAAAAGTTTCCATCTTTGACGAAGGGGACCCACGGTGAAGTAGGGATGGTAAAGGTTGCCAAGGACAGAAGTGGTGGTGTCAGTAGTGCTTTCAGCTTGGAAGACGAGGCTGAGGAGGGCAAAAAAGAGTAGTATCCTATTGTTCCATATGGCCAGATTCCCGGAAACAAGTGACCTGCTGGAGCAAGAATGCTCCAAGGTTCCTGAGCCTTTTTTTTTTTTTTGGGGGGGATTTGATCTTCTCATTTGGACCCTTTCAGTTACCCAGGTCATGTAGAAGCGCCCCCTTTTATCCCTTCCTGCGAGGATAGTATGTTCGTGGTGTTCCCTGGGGAGTTTCACATAGGCCAGGATGGTGCCCCTTATTTAAATGGCTACCCCTTTCCAACAGTGTACATATTTGTTTTTGTTACCGGTTGTGCCTTGCCTGATGTATCATGGGATCATGTATGAAACTGGTGAACCCAGTGTTTGACAGATCTGTTTGCCTAATTGGCTGGAAGTTGCAGATGAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA762126             [TGCAAAGCGCATGGATAATAACTGCATTTTGGGGCGTTCTTGCCTTGGTCTGCCTCTTGGGATTTGTTATCTATGGGCGCCATCCCAGAGCTCCCAAAGATACGCGTATTCAGGCGAAGCTGCTGACGACGATGATGAAAAGTTTCCATCTTTGACGAAGGGGACCCACGGTGAAGTAGGGATGGTAAAGGTTGCCAAGGACAGAAGTGGTGGTGTCAGTAGTGCTTTCAGCTTGGAAGACGAGGCTGAGGAGGGCAAAAAAGAGTAGTATCCTATTGTTCCATATGGCCAGATTCCCGGAAACAAGTGACCTGCTGGAGCAAGAATGCTCCAAGGTTCCTGAGCCTTTTTTTTTTTTTTGGGGGGGATTTGATCTTCTCATTTGGACCCTTTCAGTTACCCAGGTCATGTAGAAGCGCCCCCTTTTATCCCTTCCTGCGAGGATAGTATGTTCGTGGTGTTCCCTGGGGAGTTTCACATAGGCCAGGATGGTGCCCCTTATTTAAATGGCTACCCCTTTCCAACAGTGTACATATTTGTTTTTGTTACCGGTTGTGCCTTGCCTGATGTATCATGGGATCATGTATGAAACTGGTGAACCCAGTGTTTGACAGATCTGTTTGCCTAATTGGCTGGAAGTTGCAGATGAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10145#1 TGCAAAGCGCATGGATAATAACTGCATTTTGGGGCGTTCTTGCCTTGGTCTGCCTCTTGG GATTTGTTATCTATGGGCGCCATCCCAGAGCTCCCAAAGATACGCGTATTCAGGCGAAGC TGCTGACGACGATGATGAAAAGTTTCCATCTTTGACGAAGGGGACCCACGGTGAAGTAGG GATGGTAAAGGTTGCCAAGGACAGAAGTGGTGGTGTCAGTAGTGCTTTCAGCTTGGAAGA CGAGGCTGAGGAGGGCAAAAAAGAGTAGTATCCTATTGTTCCATATGGCCAGATTCCCGG AAACAAGTGACCTGCTGGAGCAAGAATGCTCCAAGGTTCCTGAGCCTTTTTTTTTTTTTT GGGGGGGATTTGATCTTCTCATTTGGACCCTTTCAGTTACCCAGGTCATGTAGAAGCGCC CCCTTTTATCCCTTCCTGCGAGGATAGTATGTTCGTGGTGTTCCCTGGGGAGTTTCACAT AGGCCAGGATGGTGCCCCTTATTTAAATGGCTACCCCTTTCCAACAGTGTACATATTTGT TTTTGTTACCGGTTGTGCCTTGCCTGATGTATCATGGGATCATGTATGAAACTGGTGAAC CCAGTGTTTGACAGATCTGTTTGCCTAATTGGCTGGAAGTTGCAGATGAAAAAAAAAAAA AAAAAAAAAAA



consensusID : consensus_10145#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence
                              [NGNCNTNGATGGANGGACAAAAGAGAGTGACCTGCTGGAGCAAGAATGCTCCAAGGTTCCTGAGCTTTCTTCTTCTTTTTGGTGGTGATTTGATCTTCTCTTTTGTACCTTCTCAGTTACACAGGTCATGTAGAAGCGCACCATTTTATCCATTCCTGCGAGGATAGTATGTTCGTGGTGTTCCATGTGGAGTTTCACATAGGCCAGGATGGTGCACATTATTTAAATGACTACACATTCACAACAGTGTACATATCTGTTTTTGTTACCGGTTGTGCATTGCCTGATGTATCATGGGTATCATGTATGAAACTNGTGAACGCAGTTTTTGACAGATCTGTTTGCCT]

[+] EMBL AU162221             [NGNCNTNGATGGANGGACAAAAGAGAGTGACCTGCTGGAGCAAGAATGCTCCAAGGTTCCTGAGCTTTCTTCTTCTTTTTGGTGGTGATTTGATCTTCTCTTTTGTACCTTCTCAGTTACACAGGTCATGTAGAAGCGCACCATTTTATCCATTCCTGCGAGGATAGTATGTTCGTGGTGTTCCATGTGGAGTTTCACATAGGCCAGGATGGTGCACATTATTTAAATGACTACACATTCACAACAGTGTACATATCTGTTTTTGTTACCGGTTGTGCATTGCCTGATGTATCATGGGTATCATGTATGAAACTNGTGAACGCAGTTTTTGACAGATCTGTTTGCCT]


>consensus_10145#2 NGNCNTNGATGGANGGACAAAAGAGAGTGACCTGCTGGAGCAAGAATGCTCCAAGGTTCC TGAGCTTTCTTCTTCTTTTTGGTGGTGATTTGATCTTCTCTTTTGTACCTTCTCAGTTAC ACAGGTCATGTAGAAGCGCACCATTTTATCCATTCCTGCGAGGATAGTATGTTCGTGGTG TTCCATGTGGAGTTTCACATAGGCCAGGATGGTGCACATTATTTAAATGACTACACATTC ACAACAGTGTACATATCTGTTTTTGTTACCGGTTGTGCATTGCCTGATGTATCATGGGTA TCATGTATGAAACTNGTGAACGCAGTTTTTGACAGATCTGTTTGCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10145#0      TCCCTCTCCTCCCCGTCTTCCTCCCTCTCCCGGTCTCCCCTTCGGTTGCCGCGTCACCAC 60
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      CACCACCACCGGGTCACTGCCACGTGGGCCCCACACCCCCACCTCCGCGACCTCGCGGCC 120
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      GGTGAGCCGCACTGCGCCTCCCCTCCGCTGGGTACAAACCGAGTGACCGATCTACCACCT 180
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      CCACCCACCGCCATCCCCCCCAATCCCCCCCACACGCCGCGAGATCTCCCGCCTCCTCCT 240
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      CCACCCGCCATGGATCTCCTCCGCGACCGCCGCCTCGGCGCGCTGCTGGTGGTGGTGCTG 300
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      GTGCTGGTGAGCGGCGCGGCGGTGGAGGCGTCGATCCACACCTACGACAGGGAGCCGTTC 360
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      CGGGAGGTGGGGAACGCGTTCCTCCTCTCCGGGGGCAGCGAGGGCGTCGTCGCCGACGGG 420
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      GCCGACCTCGCCGCCCCCGCCTCCTCCTTCATCAAGTTCACGAATGTTACTTTCTGGAGA 480
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      ACTCCGGAATCAGCTGAATCACATGCAAAAATGGCACACAGTACAGGTCTGGTACAGGCC 540
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      ATTTTATTTGAAGCAGCTGACAGGGATAACATTGGGGGATCTGCCTATGGTGGACAGAGG 600
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      TCCATATGTTGTACCCCTGACCTTGCTAAACTAGAGGGCTGCAAACAAGGGGAAGTAATC 660
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      AGGAGACCATCCTCTGATGATCCTGATTGGCCTTATGTGCTAGATACACACTTCAGTGGT 720
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      AGTCACCTTTCTGTGAAGTTAGAAGATGAGGTAGTTCGCATTACCAAGACAGGCATGTAC 780
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      AACTTGTTCTTCATTTCCTGTGATCCAAAACTGAGAGGCCTTAGTATGAGTGGGAAGACA 840
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      GTCTGGAGGAATCCTGGCGGCTACCTACCAGGGCGGATGGCACCTTTGATGAAATTTTAC 900
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      GTTTTTATGTCACTGGCTTATCTATTGGTCATGGTTGTCTGGTCGAGTCAGTATATAAGA 960
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      TTCTGGAGGGACATCATGCCAATCCAGAATTGGATCACACTAATTATTGCACTTGGCCTT 1020
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      TTTGAGATGACACTATGGTACTTTGAATACTTAAACTTCAACAGTAGTGGTGTACGGCCA 1080
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      ATTGGAATCACAACTTGGGTGGTTACTGTTGGAGCCATCAGAAAAACGATTTCTCGCCTA 1140
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      TTGATCCTTTCTATCTCAATGGGATATGGTGTTGTCCGCCCAACCCTGGGAGGACTGACC 1200
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      TCTAAGGTGTTGCTCCTTGGGCTGACATATTTCCTGGCTTCTGAATTGCTGGATATTGCA 1260
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      GAAAACGTTGGAACAATTAATGACATTTCTGGGAAAGCAAGGCTTTTCCTAGTTCTTCCT 1320
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      GATGCCTTTTTGGATGCTTTCCTCATACTTTGGATTTTCACTTCTCTCTCCCGCACACTT 1380
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      GAGAAGTTACAGGCTAGGAGGAGCTCAGTAAAGCTGGATATATACAGAAAATTTACTAAT 1440
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      GCATTGGCGGTATCTGTAATAGCTTCAGTTGCCTGGATTGGTTATGAGGTCTATTTCAAA 1500
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ------------------------------------------------------------
                                                                                   

consensus_10145#0      GCGACAGATCCCTTTAGTGAGGGGTGGCAGAGCGCATGGATCATAACTGCATTCTGGGAC 1560
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      -------------------------TGCAAAGCGCATGGATAATAACTGCATTTTGGGGC 35
                                                                                   

consensus_10145#0      GTTCTTGCATTTGTTTTGCTTCTTGTGATTTGTTATCTATGGGCGCCATCCCAGAGCTCA 1620
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      GTTCTTGC-CTTGGTCTGCCTCTTGGGATTTGTTATCTATGGGCGCCATCCCAGAGCTCC 94
                                                                                   

consensus_10145#0      CAAAGATACGCATATTCAGGCGAAGCTGCCGACGACGATGATGAAGAATCTCAATCTCTG 1680
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      CAAAGATACGCGTATTCAGGCGAAGCTGCTGACGACGATGATGAAAAGTTTCCATCTTTG 154
                                                                                   

consensus_10145#0      ACGAAGGGGACCGACGGTGATGTAGGGATGGTAAAGGTTGACAAGGACAGAAGTGGTGGT 1740
consensus_10145#2      ------------------------------------------------------------
consensus_10145#1      ACGAAGGGGACCCACGGTGAAGTAGGGATGGTAAAGGTTGCCAAGGACAGAAGTGGTGGT 214
                                                                                   

consensus_10145#0      GTCAGTAGTGCTTTCAGCTTGGAAGACGAGGCTGAGGAGGACAAAAGAGAGT-------- 1792
consensus_10145#2      -----------------------NGNCNTNGATG-GANGGACAAAAGAGAGT-------- 28
consensus_10145#1      GTCAGTAGTGCTTTCAGCTTGGAAGACGAGGCTGAGGAGGGCAAAAAAGAGTAGTATCCT 274
                                               * *   * ** *  ** ***** *****        

consensus_10145#0      ----------------------------------GACCTGCTGGAGCAAGAATGCTCCAA 1818
consensus_10145#2      ----------------------------------GACCTGCTGGAGCAAGAATGCTCCAA 54
consensus_10145#1      ATTGTTCCATATGGCCAGATTCCCGGAAACAAGTGACCTGCTGGAGCAAGAATGCTCCAA 334
                                                         **************************

consensus_10145#0      GGTTCCTGAGCTTTCTTCTTCTTTTTGGTGGTGATTTGATCTTCTCTTTTGTACCTTCTC 1878
consensus_10145#2      GGTTCCTGAGCTTTCTTCTTCTTTTTGGTGGTGATTTGATCTTCTCTTTTGTACCTTCTC 114
consensus_10145#1      GGTTCCTGAGCCTTTTTTTTTTTTTTGGGGGGGATTTGATCTTCTCATTTGGACCCTTTC 394
                       *********** ** ** ** ******* ** ************** **** *** * **

consensus_10145#0      AGTTACACAGGTCATGTAGAAGCGCACCATTTTATCCATTCCTGCGAGGATAGTATGTTC 1938
consensus_10145#2      AGTTACACAGGTCATGTAGAAGCGCACCATTTTATCCATTCCTGCGAGGATAGTATGTTC 174
consensus_10145#1      AGTTACCCAGGTCATGTAGAAGCGCCCCCTTTTATCCCTTCCTGCGAGGATAGTATGTTC 454
                       ****** ****************** ** ******** **********************

consensus_10145#0      GTGGTGTTCCATGTGGAGTTTCACATAGGCCAGGATGGTGCACATTATTTAAATGACTAC 1998
consensus_10145#2      GTGGTGTTCCATGTGGAGTTTCACATAGGCCAGGATGGTGCACATTATTTAAATGACTAC 234
consensus_10145#1      GTGGTGTTCCCTGGGGAGTTTCACATAGGCCAGGATGGTGCCCCTTATTTAAATGGCTAC 514
                       ********** ** *************************** * *********** ****

consensus_10145#0      ACATTCACAACAGTGTACATATCTGTTTTTGTTACCGGTTGTGCATTGCCTGATGTATCA 2058
consensus_10145#2      ACATTCACAACAGTGTACATATCTGTTTTTGTTACCGGTTGTGCATTGCCTGATGTATCA 294
consensus_10145#1      CCCTTTCCAACAGTGTACATATTTGTTTTTGTTACCGGTTGTGCCTTGCCTGATGTATCA 574
                        * **  *************** ********************* ***************

consensus_10145#0      TGG-TATCATGTATGAAACTGGTGAACGCAGTGTTTGACAGATCTGTTTGCCTAATTGAC 2117
consensus_10145#2      TGGGTATCATGTATGAAACTNGTGAACGCAGTTTTTGACAGATCTGTTTGCCT------- 347
consensus_10145#1      TGG-GATCATGTATGAAACTGGTGAACCCAGTGTTTGACAGATCTGTTTGCCTAATTGGC 633
                       ***  *************** ****** **** ********************       

consensus_10145#0      TGGAAGTTGCAGATGAAAAATAGCCAAAGT-------- 2147
consensus_10145#2      --------------------------------------
consensus_10145#1      TGGAAGTTGCAGATGAAAAAAAAAAAAAAAAAAAAAAA 671
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)