cluster # 10172

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Oryza sativa
cluster # 10172 cluster # 10172 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10172#0 length = 2385 sequences # 5

consensus_10172#1 length = 548 sequences # 2

consensusID : consensus_10172#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2385
fasta sequence

                              [CCACAGTGCGACAAGCTCTCGCCAAGTCGCTATCCAAGAAATCCCTCCCCTCTCTGTCCTACCTTGGAATCCCCACCAGGATCTCCGGCTATCCGGCGGCAGCTACCCAGCCATGGCCGCGCGCGGCGGCCTGGAGAACCCCCTCCTCGGCGGCGGCCCGGTTTCTTCTCAGGGCAGTCGGCGCCGCCGCCCGTGGACCGCGCTCGCCATCGCCGTGGCGCTGCTCGCCGTGGCGTGCGTCGTGCTGCTGCTCCTGAGCTCGGGGGGAGCGGAGCAAGGCGGTGATCGGAGCAGGGTGGTGTCCGGCGGCGGCGGCGGGGGCGTGGGGCTGAGCCCGCACGAGGTGGAGGCCGGGGTGGGCGCGGTGGCGGCGGACGACGGGAGGTGCTCGGAGGTGGGCGCCGCGGCGCTGCGCGCCGGCGGGCACGCGGCGGACGCGGCCGTGGCGGCGGCGCTCTGCCTCGGCGTGGTGCACCCGATGTCGAGCGGCGTCGGCGGCGGCGCGTTCATCGTCACCAGGGACGCCGCCTCCGGCGACGCCGTCGCCTTCGACGCCCGCGAGACAGCGCCGGCCGCGGCCACGCCGGACATGTACGCGGGCAACCCGACCTCCAAGTACAAGGGCGCGCTCGCCATGGGCGTCCCCGGCGAGCTCGCCGGCCTCCACGCCGCGTGGCCCCGCTACGGCAGGCTGCCGTGGAAGGACCTCTTCGCGCCGGCGATCAAGCTAGCGCGGGACGGCTTCACGGTGGTGCCGCCCGTCGCCGGCGCGCTCAAGGAGGCGGAGCGGGACGTGCTCGCCGACCCGGGCCTCCGCGCCGTGTTCGCGCCGCAGGGGAGGATCCTCGCCGCCGGCGAGGTGTGCCGCAACCCGGCGCTCGCGGACACGCTTGAGGCCGTCGCCAGCGGCGGCGTCGAGGCGTTCTACGGCGGCGCCATCGGCGAGAGGTTCGTCGCCGACGTGCGGCGCGCCGGGGGCATCGCGACGGTGGACGACCTGAGGGCGTACAAGGTCGAGGTGAGCGACGCCATGCGCGCCGACGCCATGGGATACACTTTCCTCGGCATGCCGCCGCCTTCCAGCGGCACAGTCGGAATGGCTCTGGTTTTGAACATCTTGGATGGATACAAATCGCTCGAGTTCTTGAAAGGGTTTCTTGGCGTGCACCGGTTCATCGAGGCGCTGAAGCACATGCTGGCCATCAGGATGGCTCTCGGCGACCCTGACTACGTCAACGTCGCCGGCAACGTCTCCCAGATGCTCTCGCCGGCGTTCGCCGACAAAATCCGGCAGCGGATCGTCGACAACACTACGTTCCCTCCCAGTTACTACTTCCCAAAATGGAGCCAGCTGAATGATCCGACGGCGACCGGAACGCGGTGGCGATGACGACGACGGTGAACTCTTACTTCGGGGCGCACGTGCTGTCGCCGTCGACGGGCATCGTGCTGAACAACGAGATGGACGACTTCTCCGTGCCGGCGGAGCGGACGCCGGACCACCTCCCGCCGGCGCCGGCGAACTTCATCGCTCCGGGAAAACGGCCTCTCTCCTCCATGACGCCGACGATCATACTAAAGAACGGACAGCTCGCCGGAGTAGTCGGCGGCAGTGGCGGGACGAACGTCATCGCGACGGCGGCCCAGGTGTTCGTGAACCATTTCATCGTCGGCATGCACCCGCTCGCCGCCGTCCAGCATCCCAGAGTCTACCACAAGCTGGTGCCGAACGTGGTGGTGTACGAGAACGAGACGGTGGTCGGCGGCGAGGTGATCGAGCTCAGCGGCGAGGCGAGGGAGTTCCTGCGGCGGAGGGGCCACCGGCTGAGGAGCACGGGCTCCGGCGCCGTCTGCCAGTTCATCGTGCAGGACTTGCTGGCGCCGGTCGGCTCGGCCGCCGACCGTCGGCAGCACGGCGGCGGGAACGTCTTCCACGGGATGCTCACCGCCGTCAGCGACCCGAGGAAAGGCGGCAGACCTGCCGGAATGTGATGGCGCATGCATGGCGCGCCACGGCATCGATTAGGCCCCCGTTTAGACAGCCGAAATTCTTACACGATTCATGTGAAAGCTGAACAAGTTTATATGGAAATTCTTCAAAATTTGTACAGCAGTGGAACGGCCGGCTGTGGCGCTCGAGCACGGGGCAGCCATGGGTGGTTTGGTGGAGAAGATGACTGGAGGTACATGAGAGGATGAACGGAGAAGATTGGGTATTTTGGTCCCAAAAATTGAAAAATACAGCCAAGGGATATTTCAGTTTTCAATGTTAGTGTCATATTTTTCAATTTCAACATGTATATAGGCAAATAGTAATGCCAAATTGTAAAATTGCAAAATTTATAATGACGTGATCAATTTTTTTTTAAAAAAAAAAAAAAAAAA]

[+] EMBL AK120703             [CCACAGTGCGACAAGCTCTCGCCAAGTCGCTATCCAAGAAATCCCTCCCCTCTCTGTCCTACCTTGGAATCCCCACCAGGATCTCCGGCTATCCGGCGGCAGCTACCCAGCCATGGCCGCGCGCGGCGGCCTGGAGAACCCCCTCCTCGGCGGCGGCCCGGTTTCTTCTCAGGGCAGTCGGCGCCGCCGCCCGTGGACCGCGCTCGCCATCGCCGTGGCGCTGCTCGCCGTGGCGTGCGTCGTGCTGCTGCTCCTGAGCTCGGGGGGGGCGGAGCAAGGCGGTGATCGGAGCAGGGTGGTGTCCGGCGGCGGCGGCGGGGGCGTGGGGCTGAGCCCGCACGAGGTGGAGGCCGGGGTGGGCGCGGTGGCGGCGGACGACGGGAGGTGCTCGGAGGTGGGCGCCGCGGCGCTGCGCGCCGGCGGGCACGCGGCGGACGCGGCCGTGGCGGCGGCGCTCTGCCTCGGCGTGGTGCACCCGATGTCGAGCGGCGTCGGCGGCGGCGCGTTCATCGTCACCAGGGACGCCGCCTCCGGCGACGCCGTCGCCTTCGACGCCCGCGAGACAGCGCCGGCCGCGGCCACGCCGGACATGTACGCGGGCAACCCGACCTCCAAGTACAAGGGCGCGCTCGCCATGGGCGTCCCCGGCGAGCTCGCCGGCCTCCACGCCGCGTGGCCCCGCTACGGCAGGCTGCCGTGGAAGGACCTCTTCGCGCCGGCGATCAAGCTAGCGCGGGACGGCTTCACGGTGGTGCCGCCCGTCGCCGGCGCGCTCAAGGAGGCGGAGCGGGACGTGCTCGCCGACCCGGGCCTCCGCGCCGTGTTCGCGCCGCAGGGGAGGATCCTCGCCGCCGGCGAGGTGTGCCGCAACCCGGCGCTCGCGGACACGCTTGAGGCCGTCGCCAGCGGCGGCGTCGAGGCGTTCTACGGCGGCGCCATCGGCGAGAGGTTCGTCGCCGACGTGCGGCGCGCCGGGGGCATCGCGACGGTGGACGACCTGAGGGCGTACAAGGTCGAGGTGAGCGACGCCATGCGCGCCGACGCCATGGGATACACTTTCCTCGGCATGCCGCCGCCTTCCAGCGGCACAGTCGGAATGGCTCTGGTTTTGAACATCTTGGATGGATACAAATCGCTCGAGTTCTTGAAAGGGTTTCTTGGCGTGCACCGGTTCATCGAGGCGCTGAAGCACATGCTGGCCATCAGGATGGCTCTCGGCGACCCTGACTACGTCAACGTCGCCGGCAACGTCTCCCAGATGCTCTCGCCGGCGTTCGCCGACAAAATCCGGCAGCGGATCGTCGACAACACTACGTTCCCTCCCAGTTACTACTTCCCAAAATGGAGCCAGCTGAATGATCCGACGGCGACCGGAACGCGGTGGCGATGACGACGACGGTGAACTCTTACTTCGGGGCGCACGTGCTGTCGCCGTCGACGGGCATCGTGCTGAACAACGAGATGGACGACTTCTCCGTGCCGGCGGAGCGGACGCCGGACCACCTCCCGCCGGCGCCGGCGAACTTCATCGCTCCGGGAAAACGGCCTCTCTCCTCCATGACGCCGACGATCATACTAAAGAACGGACAGCTCGCCGGAGTAGTCGGCGGCAGTGGCGGGACGAACGTCATCGCGACGGCGGCCCAGGTGTTCGTGAACCATTTCATCGTCGGCATGCACCCGCTCGCCGCCGTCCAGCATCCCAGAGTCTACCACAAGCTGGTGCCGAACGTGGTGGTGTACGAGAACGAGACGGTGGTCGGCGGCGAGGTGATCGAGCTCAGCGGCGAGGCGAGGGAGTTCCTGCGGCGGAGGGGCCACCGGCTGAGGAGCACGGGCTCCGGCGCCGTCTGCCAGTTCATCGTGCAGGACTTGCTGGCGCCGGTCGGCTCGGCCGCCGACCGTCGGCAGCACGGCGGCGGGAACGTCTTCCACGGGATGCTCACCGCCGTCAGCGACCCGAGGAAAGGCGGCAGACCTGCCGGAATGTGATGGCGCATGCATGGCGCGCCACGGCATCGATTAGGCCCCCGTTTAGACAGCCGAAATTCTTACACGATTCATGTGAAAGCTGAACAAGTTTATATGGAAATTCTTCAAAATTTGTACAGCAGTGGAACGGCCGGCTGTGGCGCTCGAGCACGGGGCAGCCATGGGTGGTTTGGTGGAGAAGATGACTGGAGGTACATGAGAGGATGAACGGAGAAGATTGGGTATTTTGGTCCCAAAAATTGAAAAATACAGCCAAGGGATATTTCAGTTTTCAATGTTAGTGTCATATTTTTCAATTTCAACATGTATATAGGCAAATAGTAATGCCAAATTGTAAAATTGCAAAATTTATAATGACGTGATCAATTTTTTTTTAAAAAAAA          ]
[+] EMBL C91850               [                TCTCGCCAAGTCGCTATCCAAGAAATCCCTCCCCTCTCTGTCCTACCTTGGAATCCCCACCAGGATCTCCGGCTATCCGGCGGCAGCTACCCAGCCATGGCCGCGCGCGGCGGCCTGGAGAACCCCCTNCTNGGCGGCGGCCCGGTTTCTTCTCAGGGCAGTCGGCGCCG CGCCCGTGGACCGCGCTCGACATCGACGTGGCGCTGCTCGCCGTGGCGTGCGTCGTGCTGCTGNTCCTGAGCTCGGGGGGAGCGGANAAAGGCGGTGATCGGAGCAGGGTGGTGTCCGNCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU056150             [                                                     CTGTCCTACCTTGGAATCCCCACCAGGATCTCCGGCTATCCGGCGGCAGCTACCCAGCCATGGCCGCGCGCGGCGGCCTGGAGAACCCCCTCCTCGGCGGCGGCCCGGTTTCTTCTCAGGGCAGTCGGCGCCGCCGCCCGTGGACCGCGCTCGCCATCGCCGTGGCGCTGCTCGCCGTGGCGTGCGTCGTGCTGCTGCTCCTGAGCTCGGGGGGAGCGGAGCAAGGCGGTGATCGGAGCAGGGTGGTGTCCGGCGGCGGCGGCGGGGGCGTGGGGCTGAGCCCGCACGAGGTGGAGGCCGGGGTGGGCGCNGTGGCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB669769             [                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCGTGGCGGGGGCGCTCTGCCTCGGCGTGGTGCACCCGATGTCGAGCGGCGTCGGCGGCGGCGCGTTCATCGTCACCAGGGACGCCGCCTCCGGCGACGCCGTCGCCTTCGACGCCCGCGAGACCGCGCCGGCCGCGGCCACGCCGGACATGTACGCGGGCAACCCGACCTCCAAGTACAAGGGCGCGCTCGCCATGGGCGTCCCCGGCGAGCTCGCCGGCCTCCACGCCGCGTGGTCCCGCTACGGCAGGCTGCCGTGGAAGGACCTCTTCGCGCCGGCGATCAAGCTAGCGCGGGACGGCTTCACGGTGGTGCCGCCCGTCGCCGGCGCGCTCAAGGAGGCGGAGCGGGACGTGCTCGCCGACCCGGGCCTCCGCGCCGTGTTCGCGCCGCAGGGGAGGATCCTCGCCGCCGGCGAGGTGTGCCGCAACCCGGCGCTCGCGGACACGCTTGAGGCCGTCGCCAGCGGCGGCGTCGAGGCGTTCTACGGCGGCGCCATCGGCGAGAGGTTCGTCGCCGACGTGCGGCGCGCCGGGGGCATCGCGACGGTGGACGACCTGAGGGCGTACAAGGTCGAGGTGAGCGACGCCATGCGCGCCGACGCCATGGGATACACTTTCCTCGGCATGCCGCCGCCTTCCAGCGGCACAGTCGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU056151             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTTTGNTGGAGNAGATGACTGGAGGTNCNTGNGAGGATGAACGGAGAAGATTGGGTATTTTGGTCCCAAAAATTGANAAATACAGCCAAGGGATATTTCAGTTTTCAATGTTAGTGTCATATTTTTCAATTTCAACATGTATATAGGCAAATAGTAATGCCAAATTGTAAAATTGCAAAATTTATAATGACGTGATCAATTTTTTTTTAAAAAAAAAAAAAAAAAA]




>consensus_10172#0
CCACAGTGCGACAAGCTCTCGCCAAGTCGCTATCCAAGAAATCCCTCCCCTCTCTGTCCT
ACCTTGGAATCCCCACCAGGATCTCCGGCTATCCGGCGGCAGCTACCCAGCCATGGCCGC
GCGCGGCGGCCTGGAGAACCCCCTCCTCGGCGGCGGCCCGGTTTCTTCTCAGGGCAGTCG
GCGCCGCCGCCCGTGGACCGCGCTCGCCATCGCCGTGGCGCTGCTCGCCGTGGCGTGCGT
CGTGCTGCTGCTCCTGAGCTCGGGGGGAGCGGAGCAAGGCGGTGATCGGAGCAGGGTGGT
GTCCGGCGGCGGCGGCGGGGGCGTGGGGCTGAGCCCGCACGAGGTGGAGGCCGGGGTGGG
CGCGGTGGCGGCGGACGACGGGAGGTGCTCGGAGGTGGGCGCCGCGGCGCTGCGCGCCGG
CGGGCACGCGGCGGACGCGGCCGTGGCGGCGGCGCTCTGCCTCGGCGTGGTGCACCCGAT
GTCGAGCGGCGTCGGCGGCGGCGCGTTCATCGTCACCAGGGACGCCGCCTCCGGCGACGC
CGTCGCCTTCGACGCCCGCGAGACAGCGCCGGCCGCGGCCACGCCGGACATGTACGCGGG
CAACCCGACCTCCAAGTACAAGGGCGCGCTCGCCATGGGCGTCCCCGGCGAGCTCGCCGG
CCTCCACGCCGCGTGGCCCCGCTACGGCAGGCTGCCGTGGAAGGACCTCTTCGCGCCGGC
GATCAAGCTAGCGCGGGACGGCTTCACGGTGGTGCCGCCCGTCGCCGGCGCGCTCAAGGA
GGCGGAGCGGGACGTGCTCGCCGACCCGGGCCTCCGCGCCGTGTTCGCGCCGCAGGGGAG
GATCCTCGCCGCCGGCGAGGTGTGCCGCAACCCGGCGCTCGCGGACACGCTTGAGGCCGT
CGCCAGCGGCGGCGTCGAGGCGTTCTACGGCGGCGCCATCGGCGAGAGGTTCGTCGCCGA
CGTGCGGCGCGCCGGGGGCATCGCGACGGTGGACGACCTGAGGGCGTACAAGGTCGAGGT
GAGCGACGCCATGCGCGCCGACGCCATGGGATACACTTTCCTCGGCATGCCGCCGCCTTC
CAGCGGCACAGTCGGAATGGCTCTGGTTTTGAACATCTTGGATGGATACAAATCGCTCGA
GTTCTTGAAAGGGTTTCTTGGCGTGCACCGGTTCATCGAGGCGCTGAAGCACATGCTGGC
CATCAGGATGGCTCTCGGCGACCCTGACTACGTCAACGTCGCCGGCAACGTCTCCCAGAT
GCTCTCGCCGGCGTTCGCCGACAAAATCCGGCAGCGGATCGTCGACAACACTACGTTCCC
TCCCAGTTACTACTTCCCAAAATGGAGCCAGCTGAATGATCCGACGGCGACCGGAACGCG
GTGGCGATGACGACGACGGTGAACTCTTACTTCGGGGCGCACGTGCTGTCGCCGTCGACG
GGCATCGTGCTGAACAACGAGATGGACGACTTCTCCGTGCCGGCGGAGCGGACGCCGGAC
CACCTCCCGCCGGCGCCGGCGAACTTCATCGCTCCGGGAAAACGGCCTCTCTCCTCCATG
ACGCCGACGATCATACTAAAGAACGGACAGCTCGCCGGAGTAGTCGGCGGCAGTGGCGGG
ACGAACGTCATCGCGACGGCGGCCCAGGTGTTCGTGAACCATTTCATCGTCGGCATGCAC
CCGCTCGCCGCCGTCCAGCATCCCAGAGTCTACCACAAGCTGGTGCCGAACGTGGTGGTG
TACGAGAACGAGACGGTGGTCGGCGGCGAGGTGATCGAGCTCAGCGGCGAGGCGAGGGAG
TTCCTGCGGCGGAGGGGCCACCGGCTGAGGAGCACGGGCTCCGGCGCCGTCTGCCAGTTC
ATCGTGCAGGACTTGCTGGCGCCGGTCGGCTCGGCCGCCGACCGTCGGCAGCACGGCGGC
GGGAACGTCTTCCACGGGATGCTCACCGCCGTCAGCGACCCGAGGAAAGGCGGCAGACCT
GCCGGAATGTGATGGCGCATGCATGGCGCGCCACGGCATCGATTAGGCCCCCGTTTAGAC
AGCCGAAATTCTTACACGATTCATGTGAAAGCTGAACAAGTTTATATGGAAATTCTTCAA
AATTTGTACAGCAGTGGAACGGCCGGCTGTGGCGCTCGAGCACGGGGCAGCCATGGGTGG
TTTGGTGGAGAAGATGACTGGAGGTACATGAGAGGATGAACGGAGAAGATTGGGTATTTT
GGTCCCAAAAATTGAAAAATACAGCCAAGGGATATTTCAGTTTTCAATGTTAGTGTCATA
TTTTTCAATTTCAACATGTATATAGGCAAATAGTAATGCCAAATTGTAAAATTGCAAAAT
TTATAATGACGTGATCAATTTTTTTTTAAAAAAAAAAAAAAAAAA

consensusID : consensus_10172#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 548
fasta sequence

                              [GGCTTCGGCCCACCGCCCCGCAGCACGCGCGGGAACGTCTTCCACGGGATGCTCACCGCC-GTC-AGC-GACCCCA-GGAAAGGCGGC-AGACCTGCCGGGATGTGATGACGCATGACGGCATCGATTAGGCCCCCGTTTAGACAGCCGAAATTC-TTAC---AATTCATGTGAAAAGTGAACAAGTTTATATGGAAATTCTTCA-AAATTTGTACAGCGATGTCGTTGTGGCCGTTGGCGGCGCTCCGGCGGTGGAGCTCGAGCTGGGCGGCGCGGCAGCCATGGGTGGTTTGGTGGAGAAGATGACTGGAGATACATGAGGGGATGAACAGAGAAGAATGGGTATTTTGGTCCCGAAAAATTGAAAAATACAGCCACAGGGATATTTCAGTTTTCAATGTGGTGTCATATTTTTCAATTTCAACATGTATATAGGC-AATAGTAATGCCATATTGTAAAATTGTAACATTTATAATGACGTGGATGATTTTTTTTAAAAAAAAATCAGTTCGTCAAAAAAAAAAAAGATGAGAGCTCCTGATTCTGCCAAAAAAAAA]

[+] EMBL BI811403             [GGCTTCGGCCCACCGCCCCGCAGCACGCGCGGGAACGTCTTCCACGGGATGCTCACCGCC GTC AGC GACCCCA GGAAAGGCGGC AGACCTGCCGGGATGTGATGACGCATGACGGCATCGATTAGGCCCCCGTTTAGACAGCCGAAATTC TTAC   AATTCATGTGAAAAGTGAACAAGTTTATATGGAAATTCTTCA AAATTTGTACAGCGATGTCGTTGTGGCCGTTGGCGGCGCTCCGGCGGTGGAGCTCGAGCTGGGCGGCGCGGCAGCCATGGGTGGTTTGGTGGAGAAGATGACTGGAGATACATGAGGGGATGAACAGAGAAGAATGGGTATTTTGGTCCCGAAAAATTGAAAAATACAGCCACAGGGATATTTCAGTTTTCAATGTGGTGTCATATTTTTCAATTTCAACATGTATATAGGC AATAGTAATGCCATATTGTAAAATTGTAACATTTATAATGACGTGGATGATTTTTTTTAAAAAAAAATCAGTTCGTCAAAAAAAAAA                                 ]
[+] EMBL BI811205             [                             CGGGAACGTCTTCCACGGGATGCTCACCGCCGGTCAAGCGGACCCCAGGGAAAGGCGGCAAGACCTGCCGGGATGTGATGACGCATGACGGCATCGATTAGGCCCCCGTTTAGACAGCCGAAATTCGTTACAAGAATTCATGTGAAAAGTGAACAAGTTTATATGGAAATTCTTCAGAAATTTGTACAGCGATGTCGTTGT GCC TT GCGGCGCTCCGGCGGTGGAGCTCGAGCT GGCGGCGC GCAGCCATGGGT GTTT GTGGAGAAGATGACTGGAGATACATGAGGGGATGAACAGAGAAGAATGGGTATTTTGGTCCCGAAAAATTGAAAAATACAGCCA AGGGATATTTCAGTTTTCAATGTGGTGTCATATTTTTCAATTTCAACATGTATATAGGCAAATAGTAATGCCATATTGTAAAATTGTAACATTTATAATGACGTGGATGATTTTTTTTAAAAAAAAATCAGTTCGTCACAACTCTGAAAGATGAGAGCTCCTGATTCTGCCAAAAAAAAA]




>consensus_10172#1
GGCTTCGGCCCACCGCCCCGCAGCACGCGCGGGAACGTCTTCCACGGGATGCTCACCGCC
GTCAGCGACCCCAGGAAAGGCGGCAGACCTGCCGGGATGTGATGACGCATGACGGCATCG
ATTAGGCCCCCGTTTAGACAGCCGAAATTCTTACAATTCATGTGAAAAGTGAACAAGTTT
ATATGGAAATTCTTCAAAATTTGTACAGCGATGTCGTTGTGGCCGTTGGCGGCGCTCCGG
CGGTGGAGCTCGAGCTGGGCGGCGCGGCAGCCATGGGTGGTTTGGTGGAGAAGATGACTG
GAGATACATGAGGGGATGAACAGAGAAGAATGGGTATTTTGGTCCCGAAAAATTGAAAAA
TACAGCCACAGGGATATTTCAGTTTTCAATGTGGTGTCATATTTTTCAATTTCAACATGT
ATATAGGCAATAGTAATGCCATATTGTAAAATTGTAACATTTATAATGACGTGGATGATT
TTTTTTAAAAAAAAATCAGTTCGTCAAAAAAAAAAAAGATGAGAGCTCCTGATTCTGCCA
AAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10172#0      CCACAGTGCGACAAGCTCTCGCCAAGTCGCTATCCAAGAAATCCCTCCCCTCTCTGTCCT 60
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      ACCTTGGAATCCCCACCAGGATCTCCGGCTATCCGGCGGCAGCTACCCAGCCATGGCCGC 120
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      GCGCGGCGGCCTGGAGAACCCCCTCCTCGGCGGCGGCCCGGTTTCTTCTCAGGGCAGTCG 180
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      GCGCCGCCGCCCGTGGACCGCGCTCGCCATCGCCGTGGCGCTGCTCGCCGTGGCGTGCGT 240
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      CGTGCTGCTGCTCCTGAGCTCGGGGGGAGCGGAGCAAGGCGGTGATCGGAGCAGGGTGGT 300
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      GTCCGGCGGCGGCGGCGGGGGCGTGGGGCTGAGCCCGCACGAGGTGGAGGCCGGGGTGGG 360
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      CGCGGTGGCGGCGGACGACGGGAGGTGCTCGGAGGTGGGCGCCGCGGCGCTGCGCGCCGG 420
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      CGGGCACGCGGCGGACGCGGCCGTGGCGGCGGCGCTCTGCCTCGGCGTGGTGCACCCGAT 480
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      GTCGAGCGGCGTCGGCGGCGGCGCGTTCATCGTCACCAGGGACGCCGCCTCCGGCGACGC 540
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      CGTCGCCTTCGACGCCCGCGAGACAGCGCCGGCCGCGGCCACGCCGGACATGTACGCGGG 600
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      CAACCCGACCTCCAAGTACAAGGGCGCGCTCGCCATGGGCGTCCCCGGCGAGCTCGCCGG 660
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      CCTCCACGCCGCGTGGCCCCGCTACGGCAGGCTGCCGTGGAAGGACCTCTTCGCGCCGGC 720
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      GATCAAGCTAGCGCGGGACGGCTTCACGGTGGTGCCGCCCGTCGCCGGCGCGCTCAAGGA 780
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      GGCGGAGCGGGACGTGCTCGCCGACCCGGGCCTCCGCGCCGTGTTCGCGCCGCAGGGGAG 840
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      GATCCTCGCCGCCGGCGAGGTGTGCCGCAACCCGGCGCTCGCGGACACGCTTGAGGCCGT 900
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      CGCCAGCGGCGGCGTCGAGGCGTTCTACGGCGGCGCCATCGGCGAGAGGTTCGTCGCCGA 960
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      CGTGCGGCGCGCCGGGGGCATCGCGACGGTGGACGACCTGAGGGCGTACAAGGTCGAGGT 1020
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      GAGCGACGCCATGCGCGCCGACGCCATGGGATACACTTTCCTCGGCATGCCGCCGCCTTC 1080
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      CAGCGGCACAGTCGGAATGGCTCTGGTTTTGAACATCTTGGATGGATACAAATCGCTCGA 1140
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      GTTCTTGAAAGGGTTTCTTGGCGTGCACCGGTTCATCGAGGCGCTGAAGCACATGCTGGC 1200
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      CATCAGGATGGCTCTCGGCGACCCTGACTACGTCAACGTCGCCGGCAACGTCTCCCAGAT 1260
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      GCTCTCGCCGGCGTTCGCCGACAAAATCCGGCAGCGGATCGTCGACAACACTACGTTCCC 1320
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      TCCCAGTTACTACTTCCCAAAATGGAGCCAGCTGAATGATCCGACGGCGACCGGAACGCG 1380
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      GTGGCGATGACGACGACGGTGAACTCTTACTTCGGGGCGCACGTGCTGTCGCCGTCGACG 1440
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      GGCATCGTGCTGAACAACGAGATGGACGACTTCTCCGTGCCGGCGGAGCGGACGCCGGAC 1500
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      CACCTCCCGCCGGCGCCGGCGAACTTCATCGCTCCGGGAAAACGGCCTCTCTCCTCCATG 1560
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      ACGCCGACGATCATACTAAAGAACGGACAGCTCGCCGGAGTAGTCGGCGGCAGTGGCGGG 1620
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      ACGAACGTCATCGCGACGGCGGCCCAGGTGTTCGTGAACCATTTCATCGTCGGCATGCAC 1680
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      CCGCTCGCCGCCGTCCAGCATCCCAGAGTCTACCACAAGCTGGTGCCGAACGTGGTGGTG 1740
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      TACGAGAACGAGACGGTGGTCGGCGGCGAGGTGATCGAGCTCAGCGGCGAGGCGAGGGAG 1800
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      TTCCTGCGGCGGAGGGGCCACCGGCTGAGGAGCACGGGCTCCGGCGCCGTCTGCCAGTTC 1860
consensus_10172#1      ------------------------------------------------------------
                                                                                   

consensus_10172#0      ATCGTGCAGGACTTGCTGGCGCCGGTCGGCTCGGCCGCCGACCGTCG-GCAGCACGGCGG 1919
consensus_10172#1      ---------------------------GGCTTCG--GCCCACCGCCCCGCAGCACGC--G 29
                                                  ****  *  *** **** *  ********   *

consensus_10172#0      CGGGAACGTCTTCCACGGGATGCTCACCGCCGTCAGCGACCCGAGGAAAGGCGGCAGACC 1979
consensus_10172#1      CGGGAACGTCTTCCACGGGATGCTCACCGCCGTCAGCGACCCCAGGAAAGGCGGCAGACC 89
                       ****************************************** *****************

consensus_10172#0      TGCCGGAATGTGATGGCGCATGCATGGCGCGCCACGGCATCGATTAGGCCCCCGTTTAGA 2039
consensus_10172#1      TGCCGGGATGTGATGACGCATG-----------ACGGCATCGATTAGGCCCCCGTTTAGA 138
                       ****** ******** ******           ***************************

consensus_10172#0      CAGCCGAAATTCTTACACGATTCATGTGAAAGCTGAACAAGTTTATATGGAAATTCTTCA 2099
consensus_10172#1      CAGCCGAAATTCTTACA--ATTCATGTGAAAAGTGAACAAGTTTATATGGAAATTCTTCA 196
                       *****************  ************  ***************************

consensus_10172#0      AAATTTGTACAGCAGTGG-------------AACGGC----CGGCTGTGGCGCTCGAGC- 2141
consensus_10172#1      AAATTTGTACAGCGATGTCGTTGTGGCCGTTGGCGGCGCTCCGGCGGTGGAGCTCGAGCT 256
                       *************  **                ****    **** **** ******** 

consensus_10172#0      -----ACGGGGCAGCCATGGGTGGTTTGGTGGAGAAGATGACTGGAGGTACATGAGAGGA 2196
consensus_10172#1      GGGCGGCGCGGCAGCCATGGGTGGTTTGGTGGAGAAGATGACTGGAGATACATGAGGGGA 316
                             ** ************************************** ******** ***

consensus_10172#0      TGAACGGAGAAGATTGGGTATTTTGGTCCC-AAAAATTGAAAAATACAGCCA-AGGGATA 2254
consensus_10172#1      TGAACAGAGAAGAATGGGTATTTTGGTCCCGAAAAATTGAAAAATACAGCCACAGGGATA 376
                       ***** ******* **************** ********************* *******

consensus_10172#0      TTTCAGTTTTCAATGTTAGTGTCATATTTTTCAATTTCAACATGTATATAGGCAAATAGT 2314
consensus_10172#1      TTTCAGTTTTCAATGT-GGTGTCATATTTTTCAATTTCAACATGTATATAGGCAA-TAGT 434
                       ****************  ************************************* ****

consensus_10172#0      AATGCCAAATTGTAAAATTGCAAAATTTATAATGACGTGATCAATTTTTTTTTAAAAAAA 2374
consensus_10172#1      AATGCCATATTGTAAAATTGTAACATTTATAATGACGTGGATGATTTTTTTTAAAAAAAA 494
                       ******* ************ ** ***************    ********* *******

consensus_10172#0      A----------AAAAAAAAAA--------------------------------- 2385
consensus_10172#1      ATCAGTTCGTCAAAAAAAAAAAAGATGAGAGCTCCTGATTCTGCCAAAAAAAAA 548
                       *          **********