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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1240 fasta sequence
[TTTCTTTCCGCCTCTCTCTCTCGACCCGCGGCAGCACAGCACCAAGTATTTTGTGGGGGATACGAGCGGCAAAACAGGTGAAAGTAACTGCAGGCCTTGCCGCGTGGTGGTGTAGCCGCGTAGGGGTGGTATAAAGCCAAAGCCGTTGTGCGTAAGCATCCCCTCGACTTGTTCTCCCAAGTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCGAATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGCGTTGTCCTCTTCTTCGTCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCGACAGGTGCGTGCGCCGGTCCAAGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCCTCGCCGCGTCCTTCAACGGCGGCCACCTCGCCGCCGCGAGCCCGGCGCTGTTCAGGGGCGGTGTCGGCTGCGGCGCCTGCTTCCAGGTGCGGTGCAAGGACGGCAAGCTGTGCAGCACGGCGGGCGCCAAGGTGGTCGTGACGGACGAGGCGCGGTCGACGAACCGCACCGACCTCGTGCTGAGCGCCGCCGCGTACGCCGCCATGGCCCGCCCCGGCATGGCCGCGCAGCTCAGAACACGCCGCGCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGAGTACGCAGCTGGTCGCAACCTGTCGATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGAGCTGTCCATCAGGTTCCTCTACCAGGGTGGCCAAACCGACATCGTCGCCGTCGACGTCGCCACGGTCGGGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGCAGGCGCCGGCGGGGCCGCTGCAGTTCAGGGTGGTGGTCA-CCGGCGGGTACGACGGGAAGTGGGTGTGGGCCGACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCATCGAATTAAGAGCCA-CAG-CCCACAAGAACAACTTGCCTTCCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK068088 [TTTCTTTCCGCCTCTCTCTCTCGACCCGCGGCAGCACAGCACCAAGTATTTTGTGGGGGATACGAGCGGCAAAACAGGTGAAAGTAACTGCAGGCCTTGCCGCGTGGTGGTGTAGCCGCGTAGGGGTGGTATAAAGCCAAAGCCGTTGTGCGTAAGCATCCCCTCGACTTGTTCTCCCAAGTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCGAATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGCGTTGTCCTCTTCTTCGTCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCGACAGGTGCGTGCGCCGGTCCAAGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCCTCGCCGCGTCCTTCAACGGCGGCCACCTCGCCGCCGCGAGCCCGGCGCTGTTCAGGGGCGGTGTCGGCTGCGGCGCCTGCTTCCAGGTGCGGTGCAAGGACGGCAAGCTGTGCAGCACGGCGGGCGCCAAGGTGGTCGTGACGGACGAGGCGCGGTCGACGAACCGCACCGACCTCGTGCTGAGCGCCGCCGCGTACGCCGCCATGGCCCGCCCCGGCATGGCCGCGCAGCTCAGAACACGCCGCGCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGAGTACGCAGCTGGTCGCAACCTGTCGATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGAGCTGTCCATCAGGTTCCTCTACCAGGGTGGCCAAACCGACATCGTCGCCGTCGACGTCGCCACGGTCGGGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGCAGGCGCCGGCGGGGCCGCTGCAGTTCAGGGTGGTGGTCA CCGGCGGGTACGACGGGAAGTGGGTGTGGGCCGACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCATCGAATTAAGAGCCA C ]
[+] EMBL AK066611 [ TTGTTCTCCCAAGTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCGAATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGCGTTGTCCTCTTCTTCGTCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCGACAGGTGCGTGCGCCGGTCCAAGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCCTCGCCGCGTCCTTCAACGGCGGCCACCTCGCCGCCGCGAGCCCGGCGCTGTTCAGGGGCGGTGTCGGCTGCGGCGCCTGCTTCCAGGTGCGGTGCAAGGACGGCAAGCTGTGCAGCACGGCGGGCGCCAAGGTGGTCGTGACGGACGAGGCGCGGTCGACGAACCGCACCGACCTCGTGCTGAGCGCCGCCGCGTACGCCGCCATGGCCCGCCCCGGCATGGCCGCGCAGCTCAGAACACGCCGCGCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGAGTACGCAGCTGGTCGCAACCTGTCGATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGAGCTGTCCATCAGGTTCCTCTACCAGGGTGGCCAAACCGACATCGTCGCCGTCGACGTCGCCACGGTCGGGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGCAGGCGCCGGCGGGGCCGCTGCAGTTCAGGGTGGTGGTCA CCGGCGGGTACGACGGGAAGTGGGTGTGGGCCGACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCATCGAATTAAGA ]
[+] EMBL OSC109101 [ ccgCCCAAGTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCGAATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGTNTNGTCCTCTTCTTNGTCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCNACAGGTGCGTGCGCCGGTCCAAGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCCTCGCCGCGTCCTTCAACGGCG ]
[+] EMBL BI811148 [ GGAGAAGA CCGTCC CCGCGCGA CTGTCCATCAGGTTCCTCTACCAGGGT GCCCAACCGACATCGTCGCCGTCGACGTCGCCACGGTC GGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGCAGGCGCCGGCGGGGCCGCTGCAGTTCA GGTGGTGGTCACCCGGCGGGTACGACGGGAAGTGGGTGT GGCCGTCGGCGAGGTCCTGCCGCGGCGGTGGACGGCCAGACGGGTGTACGACGCCGGCGTGCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCATCGAATTAAGAGCCACCAGCCCCACAAGAACAACTTGCTTTCCGTTGCAAAAAAAAAA ]
[+] EMBL AU102133 [ GGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGTGCAGGCGCCGGCGGGGCCNCTGCAGTTCAGGGTGGTGGTNA CCGGCGGGTACGACGGGAAGTGGGTGTGGGCNGACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGATCGCCGACGTCNCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGNGTGGAAGTGACACACACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTAGCCATCCNTCGAATTAAGAGCCA CAG CCCACAAGAACAACTTGCCTTCCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL CF315159 [ CCATCGAATTAAGAGCCA CAG CCCACAAGAACAACTTGCCTTCCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence
[GGTCGGTTCGTCGAACTGGAAGTTCATGACGCTGGACTACGGCCGGCGTGGAGCACGGCACCAGGCACCGCGGGGTCCGCTTCCAAGTTCAGGTGTGTTCACGGCGGGTACGACGGGAATTGGGTTGGCCCTCGGCGAGGTCCTCCCGCGGTGGACGGCCAGACGGGTGTACGACGCCGGCGTCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGTGACACGCAGGAGTGGAAGTGACACACACCGCATTACATGTACATTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTACCATCCATCGAATTAAGACCACAGCCCACAAGAAAAAAAAAA]
[+] EMBL BI809434 [GGTCGGTTCGTCGAACTGGAAGTTCATGACGCTGGACTACGGCCGGCGTGGAGCACGGCACCAGGCACCGCGGGGTCCGCTTCCAAGTTCAGGTGTGTTCACGGCGGGTACGACGGGAATTGGGTTGGCCCTCGGCGAGGTCCTCCCGCGGTGGACGGCCAGACGGGTGTACGACGCCGGCGTCAGATCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGTGACACGCAGGAGTGGAAGTGACACACACCGCATTACATGTACATTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGGACGCATTGAGCAGCTACCATCCATCGAATTAAGACCACAGCCCACAAGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10193#0 TTTCTTTCCGCCTCTCTCTCTCGACCCGCGGCAGCACAGCACCAAGTATTTTGTGGGGGA 60
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 TACGAGCGGCAAAACAGGTGAAAGTAACTGCAGGCCTTGCCGCGTGGTGGTGTAGCCGCG 120
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 TAGGGGTGGTATAAAGCCAAAGCCGTTGTGCGTAAGCATCCCCTCGACTTGTTCTCCCAA 180
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 GTAAACCACTTCAGTTTCAGAGTTTTCGAGCGAGCACGTTTTCGTAGCTTCCGTCGATCG 240
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 AATTCATGGCCGTTCGGTGTTGCTCTTCCATGGCGAGCGCCAGCGTTGTCCTCTTCTTCG 300
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 TCGTCGTCGGCATGTCGGCGTCGATGGTCTCCGGCTGCGACAGGTGCGTGCGCCGGTCCA 360
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 AGGCCGGATTCCGCGACTCGTCGATCGCGCTGAACGCCGGTTCTTGCGGGTACGGCTCCC 420
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 TCGCCGCGTCCTTCAACGGCGGCCACCTCGCCGCCGCGAGCCCGGCGCTGTTCAGGGGCG 480
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 GTGTCGGCTGCGGCGCCTGCTTCCAGGTGCGGTGCAAGGACGGCAAGCTGTGCAGCACGG 540
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 CGGGCGCCAAGGTGGTCGTGACGGACGAGGCGCGGTCGACGAACCGCACCGACCTCGTGC 600
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 TGAGCGCCGCCGCGTACGCCGCCATGGCCCGCCCCGGCATGGCCGCGCAGCTCAGAACAC 660
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 GCCGCGCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGAGTACGCAGCTGGTCGCAACC 720
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 TGTCGATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGAGCTGTCCATCAGGTTCCTCT 780
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 ACCAGGGTGGCCAAACCGACATCGTCGCCGTCGACGTCGCCACGGTCGGGTCGTCGAACT 840
consensus_10193#1 -------------------------------------------GGTCGGTTCGTCGAACT 17
****** **********
consensus_10193#0 GGAAGTTCATGACGCGGGACTACGGGCCGGCGTGGAGCACGGCGC-AGGCGCCGGCGGGG 899
consensus_10193#1 GGAAGTTCATGACGCTGGACTACGG-CCGGCGTGGAGCACGGCACCAGGCACCGCGGGGT 76
*************** ********* ***************** * **** *** ***
consensus_10193#0 CCGCTGC--AGTTCAGGGTGGTGGTCACCGGCGGGTACGACGGGAAGTGGGTGTGGGCCG 957
consensus_10193#1 CCGCTTCCAAGTTCAGGT--GTGTTCAC-GGCGGGTACGACGGGAATTGGGT--TGGCCC 131
***** * ******** *** **** ***************** ***** ****
consensus_10193#0 ACGGCGAGGTCCTGCCGCGGCGGTGGACGGCCGGACGGGTGTACGACGCCGGCGTGCAGA 1017
consensus_10193#1 TCGGCGAGGTCCTCCCGCGG---TGGACGGCCAGACGGGTGTACGACGCCGGCGT-CAGA 187
************ ****** ********* ********************** ****
consensus_10193#0 TCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGCGACACGCAGGAGTGGAAGTGACACA 1077
consensus_10193#1 TCGCCGACGTCGCGCAGGAAGGGTGCTACCCGTGTGACACGCAGGAGTGGAAGTGACACA 247
********************************** *************************
consensus_10193#0 CACCGCATTAACATGTACAGTTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGG 1137
consensus_10193#1 CACCGCATTA-CATGTACA-TTTTTTTGCTTTCCTTTCTTTTTTCTCTCCCCTTTTTGGG 305
********** ******** ****************************************
consensus_10193#0 ACGCATTGAGCAGCTAGCCATCCATCGAATTAAGAGCCACAGCCCACAAGAACAACTTGC 1197
consensus_10193#1 ACGCATTGAGCAGCTA-CCATCCATCGAATTAAGA-CCACAGCCCACAAGAAAAAAAAAA 363
**************** ****************** **************** **
consensus_10193#0 CTTCCGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1240
consensus_10193#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||