These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1966 fasta sequence [CCCTAATTTCGCCTCGGCCTCGCCACGCCGCCGCACCATGGCCGCAGCCGCCGCGTCGTCCACGCCCCTCTTCTCGCCCTGCTGCGCCGCCGCGACCGCCAAGCTCGGGGCGGCGTGCCCGTCGTCGTACGGATCCCGGCGGAGGCCGTGCACGCGCCGTGGACGCCTCTCGGTGGTGGCCGTGCAGACGGGCCCGCAGAAGCCATCGCCGTCGTCGTCGTCCCAGGCGGGGACGGAATCGGAGACGCTGCAGAACCTGCTGAAGAGGGAGTACAAGTATGGGTTCGTGTCTGATTTCGAGTCCTTCTCCATCCCCAAGGGGCTCTCCGAGGCCACGGTCCGCCGCATCTCGGAGCTCAAGGCGGAGCCGGCGTGGATGCTCGACTTCCGCCTCGCCGCCTACCGCCGGTTCCTGACCATGGTGCAGCCCACCTGGAGCGACAACGTGTACGAGCCGGTGGATCTCCAGTCCATCTGCTACTACTCCGCGCCCAAGACCAAGCCCAAGCTCAACAGCCTCGACGAGGTCGACCCGGAGCTTCTCAACACCTTCGATCGCCTCGGGATCCCGCTCAGCGAGCAGAAGCGCCTCGCCAACGTCGCCGTCGATGCCGTCATCGACTCCACCTCCATCGCCACCACCCACCGGGAGGAGCTCATGAAGAAGGGCGTCATCTTTTGCTCCATTTCCGAGGCCATCCGCGAGTACCCGGACCTTGTCAAGCGCTACCTTGGCAGCGTCGTGCCGCCGGCAGATAACTACTATGCTGCCCTCAATTCGGCCGTGTTCAGCGATGGGTCGTTCTGCTATGTGCCCAAGGATACGGTTTGCCCAATGGAGATATCGACATACTTTAGGATCAACGACAAGGAGACCGGGCAATTTGAGAGGACTCTAATTGTGGCTGATGAGAGGAGCACGGTTAGCTATCTGGAAGGGTGTACTGCTCCAGCTTATGACTCCAACCAGCTCCATGCGGCGGTTGTGGAGCTTGTGTGTGAGGAGCAGGCAGAGATCAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGATGAGGAGGGGAAGGGGGGCATTTACAACTTTGTTACTAAGAGAGGACGGTGCAAAGGGCGGGGCTCTAAGATCTCATGGACACAGGTTGAGACAGGTTCAGCAATTACATGGAAGTACCCAAGTGTGGAGCTTCTTGGGGATGATACTGTTGGAGAGTTCTACTCAGTTGCACTGACGAAGGATTACCAGCAGGCAGACACAGGGACAAAAATGATCCACA-AGGGAAAGAATTCGCGGAGTCGGATTATATCCAAAGGTATCTCAGCTGGGAAGTCACGGAATTGCTACCGTGGGTTGGTCCAGATAAACTCAGGCGCAGAAAATGCTTATAATTCTTCACAGTGTGATTCTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATAGGGGAGGACCAGCTATTTTAT-TTCCAAC-AAAGGGGGATAGACCATGAAAAGGCTGTTGCAGCGATGATTGGTGGATTCTGCAGGGCTGTTTTCGAGAATCTTCCTTACGAGTTTGCACATGAGATGGAT-GCACTTATGAACCTGAA-GCTTGA-GGGATCAG-TTGGTTAATTAGATGGAGCAAAATGTCTTTGCAGTACAACACAACAATTATTTAGATGTCCTTTGTACAGAAGTATGAGAAGAATAAATTGCATGAGCAATGGACGTTTTCCTAGCCTTGTCTACCA-CTAGGGATGTCCTTGGCAACAAAGAAAATTCTGTTACTTATCTACTGTTTTATCCCTTTTTGTTTCTGTTTCTTCTGTTGTAAACAAACCCTTATTAGAATGCGTAGCCACACTAGAAATGTCTCCAAAAAAGCTACACAAGAAATGGAATATGCTTTTTTAGACTTAAAAAAAA] [+] EMBL AK121100 [CCCTAATTTCGCCTCGGCCTCGCCACGCCGCCGCACCATGGCCGCAGCCGCCGCGTCGTCCACGCCCCTCTTCTCGCCCTGCTGCGCCGCCGCGACCGCCAAGCTCGGGGCGGCGTGCCCGTCGTCGTACGGATCCCGGCGGAGGCCGTGCACGCGCCGTGGACGCCTCTCGGTGGTGGCCGTGCAGACGGGCCCGCAGAAGCCATCGCCGTCGTCGTCGTCCCAGGCGGGGACGGAATCGGAGACGCTGCAGAACCTGCTGAAGAGGGAGTACAAGTATGGGTTCGTGTCTGATTTCGAGTCCTTCTCCATCCCCAAGGGGCTCTCCGAGGCCACGGTCCGCCGCATCTCGGAGCTCAAGGCGGAGCCGGCGTGGATGCTCGACTTCCGCCTCGCCGCCTACCGCCGGTTCCTGACCATGGTGCAGCCCACCTGGAGCGACAACGTGTACGAGCCGGTGGATCTCCAGTCCATCTGCTACTACTCCGCGCCCAAGACCAAGCCCAAGCTCAACAGCCTCGACGAGGTCGACCCGGAGCTTCTCAACACCTTCGATCGCCTCGGGATCCCGCTCAGCGAGCAGAAGCGCCTCGCCAACGTCGCCGTCGATGCCGTCATCGACTCCACCTCCATCGCCACCACCCACCGGGAGGAGCTCATGAAGAAGGGCGTCATCTTTTGCTCCATTTCCGAGGCCATCCGCGAGTACCCGGACCTTGTCAAGCGCTACCTTGGCAGCGTCGTGCCGCCGGCAGATAACTACTATGCTGCCCTCAATTCGGCCGTGTTCAGCGATGGGTCGTTCTGCTATGTGCCCAAGGATACGGTTTGCCCAATGGAGATATCGACATACTTTAGGATCAACGACAAGGAGACCGGGCAATTTGAGAGGACTCTAATTGTGGCTGATGAGAGGAGCACGGTTAGCTATCTGGAAGGGTGTACTGCTCCAGCTTATGACTCCAACCAGCTCCATGCGGCGGTTGTGGAGCTTGTGTGTGAGGAGCAGGCAGAGATCAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGATGAGGAGGGGAAGGGGGGCATTTACAACTTTGTTACTAAGAGAGGACGGTGCAAAGGGCGGGGCTCTAAGATCTCATGGACACAGGTTGAGACAGGTTCAGCAATTACATGGAAGTACCCAAGTGTGGAGCTTCTTGGGGATGATACTGTTGGAGAGTTCTACTCAGTTGCACTGACGAAGGATTACCAGCAGGCAGACACAGGGACAAAAATGATCCACA AGGGAAAGAATTCGCGGAGTCGGATTATATCCAAAGGTATCTCAGCTGGGAAGTCACGGAATTGCTACCGTGGGTTGGTCCAGATAAACTCAGGCGCAGAAAATGCTTATAATTCTTCACAGTGTGATTCTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATAGGGGAGGACCAGCTATTTTAT TTCCAAC AAAGGGGGATAGACCATGAAAAGGCTGTTGCAGCGATGATTGGTGGATTCTGCAGGGCTGTTTTCGAGAATCTTCCTTACGAGTTTGCACATGAGATGGAT GCACTTATGAACCTGAA GCTTGA GGGATCAG TTGGTTAATTAGATGGAGCAAAATGTCTTTGCAGTACAACACAACAATTATTTAGATGTCCTTTGTACAGAAGTATGAGAAGAATAAATTGCATGAGCAATGGACGTTTTCCTAGCCTTGTCTACCA CTAGGGATGTCCTTGGCAACAAAGAAAATTCTGTTACTTATCTACTGTTTTATCCCTTTTTGTTTCTGTTTCTTCTGTTGTAAACAAACCCTTATTAGAATGCGTAGCCACACTAGAAATGTCTCCAAAAAAGCTACACAAGAAATGGAATCTGCTTTTTTAGACTTA ] [+] EMBL CB677331 [ GCTCAACAGCCTCGACGAGGTCGACCCGGAGCTTCTCAACACCTTCGATCGCCTCGGGATCCCGCTCAGCGAGCAGAAGCGCCTCGCCAACGTCGCCGTCGATGCCGTCATCGACTCCACCTCCATCGCCACCACCCACCGGGAGGAGCTCATGAAGAAGGGCGTCATCTTTTGCTCCATTTCCGAGGCCATCCGCGAGTACCCGGACCTTGTCAAGCGCTACCTTGGCAGCGTCGTGCCGCCGGCAGATAACTACTATGCTGCCCTCAATTCGGCCGTGTTCAGCGATGGGTCGTTCTGCTATGTGCCCAAGGATACGGTTTGCCCAATGGAGATATCGACATACTTTAGGATCAACGACAAGGAGACCGGGCAATTTGAGAGGACTCTAATTGTGGCTGATGAGAGGAGCACGGTTAGCTATCTGGAAGGGTGTACTGCTCCAGCTTATGACTCCAACCAGCTCCATGCGGCGGTTGTGGAGCTTGTGTGTGAGGAGCAGGCAGAGATCAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGATGAGGAGGGGAAGGGGGGCATTTACAACTTTGTTACTAAGAGAGGACGGTGCAAAGGGCGGGGCTCTAAGATCTCATGGACACAGGTTGAGACAGGTTCAGCAATTACATGGAAGTACCCAAGTGTGGAGCTTCTTGGGGATGATACTGTTGGAGAGTTCTACTCAGTTGCACTGACGAAGGATTACCAGCAGGCAGACACAGGGACAAAAATGATCCACANAGGG AAGAATTCGCGGAGTCGGATTATATCCAAAGGTATCTCAGCTGGGAAGTCAC ] [+] EMBL CF304499 [ GATCAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGATGAGGAGGGGAAGGGGGGCATTTACAACTTTGTTACTAAGAGAGGACGGTGCAAAGGGCGGGGCTCTAAGATCTCATGGACACAGGTTGAGACAGGTTCAGCAATTACATGGAAGTACCCAAGTGTGGAGCTTCTTGGGGATGATACTGTTGGAGAGTTCTACTCAGTTGCACTGACGAAGGATTACCAGCAGGCAGACACAGGGACAAAAATGATCCACA AGGGAAAGAATTCGCGGAGTCGGATTATATCCAAAGGTATCTCAGCTGGGAAGTCACGGAATTGCTACCGT ] [+] EMBL BQ905996 [ ATTCTTTGCTGATTGGGGATAACGCTGCTGCCAACACCTATCCGACTATTCAGGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATAGGGGAGGACCAGCTATTTTAT TTCCAAC AAAGGGGGATAGACCATGAAAAGGCTGTTGCAGCGATGATTGGTGGATTCTGCAGGGCTGTTTTCGAGAATCTTCCTTACGAGTTTGCACATGAGATGGAT GCACTTATGAACCTGAA GCTTGA GGGATCAG TTGGTTAATTAGATGGAGCAAAATGTCTTTGCAGTACAACACAACAATTATTTAGATGTCCTTTGTACAGAAGTATGAGAAGAATAAATTGCATGAGC ATGGACGTTTTCCTAGCCTTGTCTACCA CTAGGGATGTCCTTGGCAACAAAGAAAATTCTGTTACTTATCTACTGTTTTATCCCTTTTTGTTTCTGTTTCTTCTGTTGTAAACAAACCCTTATTAGAATGCGTAGCCACACTAGAAATGTCTCCAAAAAAGCTACACAAGAAATGGAATATGCTTTTTTAGACTTAAAAA ] [+] EMBL BQ908709 [ CTGCCAACACCTATCCGACTATTCAGGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGCACTTCAAAAATAGGGGAGGACCAGCTATTTTAT TTCCAACTCAAGGGGGATAGACCATGAAAAGGCTGTTGCAGCGATGATTGGTGGATTCTGCAGGGCTGTTTTCGAGAATCTTCCTTACGAGTTTGCACATGAGATGGAT GCACTTATGAACCTGAAGGCTGGAGGGGATCAG TTGGTTAATTAGATGGAGCAAAATGTCTTTGCAGTACAACACAACAATTATTTAGATGTCCTTTGTACAGAAGTATGAGAAGAATAAATTGCATGAGCAATGGACGTTTTCCTAGCCTTGTCTACCA CTAGGGATGTCCTTGGCAACAAAGAAAATTCTGTTACTTATCTACTGTTTTATCCCTTTTTGTTTCTGTTTCTTCTGTTGTAAAC AACCCTTATTAGAATGCGTAGCCACACTAGAAATGTCTCC AAAAAGCTACACAAGAAATGGAATATGCTTTTTTAGACTTAAAAAAAA] [+] EMBL BM419701 [ TTTATGTTCC AC AAAGGGGGATAGACCATGAAAAGGCTGTTGCAGCGATGATTGGTGGATTCTGCAGGGCTGTTTTCGAGAATCTTCCTTACGAGTTTGCACATGAGATGGATCGCACTTATGAACCTGAA GCTTGA GGGATCAGCTTGGTTAATTAGATGGAGCAAAATGTCTTTGCAGTACAACACAACAATTATTTAGATGTCCTTTGTACAGAAGTATGAGAAGAATAAATTGCATGAGCAATGGACGTTTTCCTAGCCTTGTCTACCACCTAGGGATGTCCTTGGCAACAAAGAAAATTCTGTTACTTATCTACTGTTTTATCCCTTTTTGTTTCTGTTTCTTCTGTTGTAAACAAACCCTTATTAGAATGCGTAGCCACACTAGAAATGTCTCCAAAAAAGCTACACAAGAAATGGAATATGCTTTTTTAGACTTAAAAA ] consensusID : consensus_10196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence [CGAGATTTGAGAGGACTCTAATTGTAGCTGATGAGAGGAGCACGGTTAGCTATCTSGAAGTGGTGTACTGCTCCAGCTTATGACTCCAACCAGCTCCATGCGGCGGTKTGTAGAGCTTGTGTGTGAGGAGCAGGCATGAGATCAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGWTTGWGGAGGGGAAGGATGGCATTTACAACTTTGTTACTAAGAGAGGACGGTACAWAGKGGCGGGACTCTAAKATCTCATKKGSACACAGGTTGTGACAGGTTCAGCAATTACATGGGAGTACCCAAGTRATKGTAGCTTCTTGGTGGTTAATACTGTTGGAGAGTTCTACTC] [+] EMBL BE229486 [CGAGATTTGAGAGGACTCTAATTGTAGCTGATGAGAGGAGCACGGTTAGCTATCTSGAAGTGGTGTACTGCTCCAGCTTATGACTCCAACCAGCTCCATGCGGCGGTKTGTAGAGCTTGTGTGTGAGGAGCAGGCATGAGATCAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGWTTGWGGAGGGGAAGGATGGCATTTACAACTTTGTTACTAAGAGAGGACGGTACAWAGKGGCGGGACTCTAAKATCTCATKKGSACACAGGTTGTGACAGGTTCAGCAATTACATGGGAGTACCCAAGTRATKGTAGCTTCTTGGTGGTTAATACTGTTGGAGAGTTCTACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10196#0 CCCTAATTTCGCCTCGGCCTCGCCACGCCGCCGCACCATGGCCGCAGCCGCCGCGTCGTC 60 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 CACGCCCCTCTTCTCGCCCTGCTGCGCCGCCGCGACCGCCAAGCTCGGGGCGGCGTGCCC 120 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 GTCGTCGTACGGATCCCGGCGGAGGCCGTGCACGCGCCGTGGACGCCTCTCGGTGGTGGC 180 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 CGTGCAGACGGGCCCGCAGAAGCCATCGCCGTCGTCGTCGTCCCAGGCGGGGACGGAATC 240 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 GGAGACGCTGCAGAACCTGCTGAAGAGGGAGTACAAGTATGGGTTCGTGTCTGATTTCGA 300 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 GTCCTTCTCCATCCCCAAGGGGCTCTCCGAGGCCACGGTCCGCCGCATCTCGGAGCTCAA 360 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 GGCGGAGCCGGCGTGGATGCTCGACTTCCGCCTCGCCGCCTACCGCCGGTTCCTGACCAT 420 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 GGTGCAGCCCACCTGGAGCGACAACGTGTACGAGCCGGTGGATCTCCAGTCCATCTGCTA 480 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 CTACTCCGCGCCCAAGACCAAGCCCAAGCTCAACAGCCTCGACGAGGTCGACCCGGAGCT 540 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 TCTCAACACCTTCGATCGCCTCGGGATCCCGCTCAGCGAGCAGAAGCGCCTCGCCAACGT 600 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 CGCCGTCGATGCCGTCATCGACTCCACCTCCATCGCCACCACCCACCGGGAGGAGCTCAT 660 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 GAAGAAGGGCGTCATCTTTTGCTCCATTTCCGAGGCCATCCGCGAGTACCCGGACCTTGT 720 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 CAAGCGCTACCTTGGCAGCGTCGTGCCGCCGGCAGATAACTACTATGCTGCCCTCAATTC 780 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 GGCCGTGTTCAGCGATGGGTCGTTCTGCTATGTGCCCAAGGATACGGTTTGCCCAATGGA 840 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 GATATCGACATACTTTAGGATCAACGACAAGGAGACCGGGCAATTTGAGAGGACTCTAAT 900 consensus_10196#1 --------------------------------------CGAGATTTGAGAGGACTCTAAT 22 * ****************** consensus_10196#0 TGTGGCTGATGAGAGGAGCACGGTTAGCTATCTGGAAG-GGTGTACTGCTCCAGCTTATG 959 consensus_10196#1 TGTAGCTGATGAGAGGAGCACGGTTAGCTATCTSGAAGTGGTGTACTGCTCCAGCTTATG 82 *** ***************************** **** ********************* consensus_10196#0 ACTCCAACCAGCTCCATGCGGCGGTT-GTGGAGCTTGTGTGTGAGGAGCAGGCA-GAGAT 1017 consensus_10196#1 ACTCCAACCAGCTCCATGCGGCGGTKTGTAGAGCTTGTGTGTGAGGAGCAGGCATGAGAT 142 ************************* ** ************************ ***** consensus_10196#0 CAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGAT-GAGGAGGGGAAGGGGGGCATTT 1076 consensus_10196#1 CAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGWTTGWGGAGGGGAAGGATGGCATTT 202 *********************************** * * *********** ******* consensus_10196#0 ACAACTTTGTTACTAAGAGAGGACGGTGCAAAGGG-CGGGGCTCTAAGATCTCATGG--A 1133 consensus_10196#1 ACAACTTTGTTACTAAGAGAGGACGGTACAWAGKGGCGGGACTCTAAKATCTCATKKGSA 262 *************************** ** ** * **** ****** ******* * consensus_10196#0 CACAGGTTGAGACAGGTTCAGCAATTACATGGAAGTACCCAAGTG--TGGAGCTTCTTGG 1191 consensus_10196#1 CACAGGTTGTGACAGGTTCAGCAATTACATGGGAGTACCCAAGTRATKGTAGCTTCTTGG 322 ********* ********************** *********** * ********** consensus_10196#0 -GGATGATACTGTTGGAGAGTTCTACTCAGTTGCACTGACGAAGGATTACCAGCAGGCAG 1250 consensus_10196#1 TGGTTAATACTGTTGGAGAGTTCTACTC-------------------------------- 350 ** * ********************** consensus_10196#0 ACACAGGGACAAAAATGATCCACAAGGGAAAGAATTCGCGGAGTCGGATTATATCCAAAG 1310 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 GTATCTCAGCTGGGAAGTCACGGAATTGCTACCGTGGGTTGGTCCAGATAAACTCAGGCG 1370 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 CAGAAAATGCTTATAATTCTTCACAGTGTGATTCTTTGCTGATTGGGGATAACGCTGCTG 1430 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 CCAACACCTATCCGACTATTCAGGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAA 1490 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 GCACTTCAAAAATAGGGGAGGACCAGCTATTTTATTTCCAACAAAGGGGGATAGACCATG 1550 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 AAAAGGCTGTTGCAGCGATGATTGGTGGATTCTGCAGGGCTGTTTTCGAGAATCTTCCTT 1610 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 ACGAGTTTGCACATGAGATGGATGCACTTATGAACCTGAAGCTTGAGGGATCAGTTGGTT 1670 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 AATTAGATGGAGCAAAATGTCTTTGCAGTACAACACAACAATTATTTAGATGTCCTTTGT 1730 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 ACAGAAGTATGAGAAGAATAAATTGCATGAGCAATGGACGTTTTCCTAGCCTTGTCTACC 1790 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 ACTAGGGATGTCCTTGGCAACAAAGAAAATTCTGTTACTTATCTACTGTTTTATCCCTTT 1850 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 TTGTTTCTGTTTCTTCTGTTGTAAACAAACCCTTATTAGAATGCGTAGCCACACTAGAAA 1910 consensus_10196#1 ------------------------------------------------------------ consensus_10196#0 TGTCTCCAAAAAAGCTACACAAGAAATGGAATATGCTTTTTTAGACTTAAAAAAAA 1966 consensus_10196#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||