These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10201#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 689 fasta sequence [CCCAGCTTGGATGTGTGCTTACAGAAGTCATCAGTGACAAAATGGAGAAGCGATGTTCCATTCTTGCACTACTTGGCTTAGTACTGCTGTTCTCCAACGTTATTGCTGAGGGAGCAGGCCTGAACAAAGCGATCTTTTCTCGCAAAGGTCTGAAAGAAGAACGCAAACTAGCTGTCACTGGAACAGCCTCATCCCTTGGCGGTTTACAAGGGCAATCGTCAAGCACCGGTGTTGGAGGTGTTAGCAGCAACAATGCTGAAAGTACAAATTCTGAAACTGGAGACTCTTCGTCAGCCTACACACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATCGGAAGATCATCCACAACAGCCAGAT-GAACAAACCGTAATGACCATGGATTGTCCCGAAGGAC-GTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGTGCCTTCGGCTATATAAACAAATATTTATGCATGTGTTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGATGCCCATGGTTTATGGTTAATAGCCAAAGCA] [+] EMBL AK121226 [CCCAGCTTGGATGTGTGCTTACAGAAGTCATCAGTGACAAAATGGAGAAGCGATGTTCCATTCTTGCACTACTTGGCTTAGTACTGCTGTTCTCCAACGTTATTGCTGAGGGAGCAGGCCTGAACAAAGCGATCTTTTCTCGCAAAGGTCTGAAAGAAGAACGCAAACTAGCTGTCACTGGAACAGCCTCATCCCTTGGCGGTTTACAAGGGCAATCGTCAAGCACCGGTGTTGGAGGTGTTAGCAGCAACAATGCTGAAAGTACAAATTCTGAAACTGGAGACTCTTCGTCAGCCTACACACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATCGGAAGATCATCCACAACAGCCAGAT GAACAAACCGTAATGACCATGGATTGTCCCGAAGGAC GTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGCTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGTGCCTTCGGCTATATAAACAAATATTTATGCATGTGTTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGATGCCCATGGTTTAT ] [+] EMBL CF293742 [ CAGCTTGGATGTGTGCTTACAGAAGTCATCAGTGACAAAATGGAGAAGCGATGTTCCATTCTTGCACTACTTGGCTTAGTACTGCTGTTCTCCAACGTTATTGCTGAGGGAGCAGGCCTGAACAAAGCGATCTTTTCTCGCAAAGGTCTGAAAGAAGAACGCAAACTAGCTGTCACTGGAACAGCCTCATCCCTTGGCGGTTTACAAGGGCAATCGTCAAGCACCGGTGTTGGAGGTGTTAGCAGCAACAATGCTGAAAGTACAAATTCTGAAACTGGAGACTCTTCGTCAGCCTACACACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATCGGAAGATCATCCACAACAGCCAGAT GAACAAACCGTAATGACCATGGATTGTCCCGAAGGAC GTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGTGCCTTCGGCTATATAAACAAATATTTATGCATGTGTTTCGCATGCATAGTAAaaa ] [+] EMBL CF295255 [ GCTTGGATGTGTGCTTACAGAAGTCATCAGTGACAAAATGGAGAAGCGATGTTCCATTCTTGCACTACTTGGCTTAGTACTGCTGTTCTCCAACGTTATTGCTGAGGGAGCAGGCCTGAACAAAGCGATCTTTTCTCGCAAAGGTCTGAAAGAAGAACGCAAACTAGCTGTCACTGGAACAGCCTCATCCCTTGGCGGTTTACAAGGGCAATCGTCAAGCACCGGTGTTGGAGGTGTTAGCAGCAACAATGCTGAAAGTACAAATTCTGAAACTGGAGACTCTTCGTCAGCCTACACACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATCGGAAGATCATCCACAACAGCCAGAT GAACAAACCGTAATGACCATGGATTGTCCCGAAGGAC GTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGTGCCTTCGGCTATATAAACA ] [+] EMBL OSS15593A [ ATCAGTGACAAAATGGAGAAGCGATGTTCCATTCTTGCACTACTTGGCTTAGTACTGCTGTTCTCCAACGTTATTGCTGAGGGAGCAGGCCTGAACAAAGCGATCTTTTCTCGCAAAGGTCTGAAAGAAGAACGCAAACTAGCTGTCACTGGAACAGCCTCATCCCTTGGCGGTTTACAAGGGCAATCGTCAAGCACCGGTGTTGGAGGTGTTAGCAGCAACAATGCTGAAAGTACAAATTCTGAAACTGGAGACTCTTCGTCAGCCTACACACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATCGGAAGATCATCCACAACAGCCAGNTGGAACAAACCGTAATGACCATGGATTGTCCCGNAGGACGGTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGGAGTATNACAAGNGTCTTTTAAT ] [+] EMBL CB683765 [ TTGCACTACTTGGCTTAGTACTGCTGTTCTCCAACGTTATTGCTGAGGGAGCAGGCCTGAACAAAGCGATCTTTTCTCGCAAAGGTCTGAAAGAAGAACGCAAACTAGCTGTCACTGGAACAGCCTCATCCCTTGGCGGTTTACAAGGGCAATCGTCAAGCACCGGTGTTGGAGGTGTTAGCAGCAACAATGCTGAAAGTACAAATTCTGAAACTGGAGACTCTTCGTCAGCCTACACACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATCGGAAGATCATCCACAACAGCCAGAT GAACAAACCGTAATGACCATGGATTGTCCCGAAGGAC GTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGTGCCTTCGGCTATATAAACAAATATTTATGCATGTGTTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGATGCCCATGGTTTATGGTTAATAGCCAAAGCA] [-] EMBL CF293743 [ AAATTCTGAAACTGGAGACTCTTCGTCAGCCTACACACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATCGGAAGATCATCCACAACAGCCAGAT GAACAAACCGTAATGACCATGGATTGTCCCGAAGGAC GTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGTGCCTTCGGCTATATAAACAAATATTTATGCATGTGTTTCGCATGCATAGTAAaaaaa ] consensusID : consensus_10201#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [CTTCCCAACCCATGGACCAATTGGTCCCCAATGGNAATCCAAGGTTAATCCGGGAAAGGAATCCAATCCNANCCAATCCAGCCAGAATGAACCAAACCGTAATGACCATGGATTGTCCCGAAGGACGTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGCTGTCGGCTATATAAACAAATATTTATGCATGTGTTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGATGCCCATGGTTTATGGTTAAA] [+] EMBL AU101823 [CTTCCCAACCCATGGACCAATTGGTCCCCAATGGNAATCCAAGGTTAATCCGGGAAAGGAATCCAATCCNANCCAATCCAGCCAGAATGAACCAAACCGTAATGACCATGGATTGTCCCGAAGGACGTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGAAGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTGGACTTGGCTTGTATAAATCTACCTGGCTGTCGGCTATATAAACAAATATTTATGCATGTGTTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGATGCCCATGGTTTATGGTTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10201#0 CCCAGCTTGGATGTGTGCTTACAGAAGTCATCAGTGACAAAATGGAGAAGCGATGTTCCA 60 consensus_10201#1 ------------------------------------------------------------ consensus_10201#0 TTCTTGCACTACTTGGCTTAGTACTGCTGTTCTCCAACGTTATTGCTGAGGGAGCAGGCC 120 consensus_10201#1 ------------------------------------------------------------ consensus_10201#0 TGAACAAAGCGATCTTTTCTCGCAAAGGTCTGAAAGAAGAACGCAAACTAGCTGTCACTG 180 consensus_10201#1 ------------------------------------------------------------ consensus_10201#0 GAACAGCCTCATCCCTTGGCGGTTTACAAGGGCAATCGTCAAGCACCGGTGTTGGAGGTG 240 consensus_10201#1 ------------------------------------------------------------ consensus_10201#0 TTAGCAGCAACAATGCTGAAAGTACAAATTCTGAAACTGGAGACTCTTCGTCAGCCTACA 300 consensus_10201#1 ---------------------------------------------CTTC-CCAACCCATG 14 **** ** ** * consensus_10201#0 CACCGATGAGTACTGCCACCACCACAGACTCCCACCATGACATGTCCATGGATCAGTATC 360 consensus_10201#1 GACCAATTGGT-------CCCCAATGGNAATCCAAGGTTA---ATCCGGGAA--AGGAAT 62 *** ** ** ** * * * *** * * *** * * ** * consensus_10201#0 GGAAGATCATCCACAACAGCCAGA-TGAAC-AAACCGTAATGACCATGGATTGTCCCGAA 418 consensus_10201#1 CCAATCCNANCCAATCCAGCCAGAATGAACCAAACCGTAATGACCATGGATTGTCCCGAA 122 ** * *** ******** ***** ***************************** consensus_10201#0 GGACGTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGA 478 consensus_10201#1 GGACGTACCATTGGTGCAGCATCGTCCTTATACTTCATGGGGTATCAAGTTATGCAACGA 182 ************************************************************ consensus_10201#0 AGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTG 538 consensus_10201#1 AGTATAACAAGAGTCTTTTAATTAATGTATATATATAAACTCGGGTATTATTATATGCTG 242 ************************************************************ consensus_10201#0 GACTTGGCTTGTATAAATCTACCTGGTGCCTTCGGCTATATAAACAAATATTTATGCATG 598 consensus_10201#1 GACTTGGCTTGTATAAATCTACCTGG--CTGTCGGCTATATAAACAAATATTTATGCATG 300 ************************** * ***************************** consensus_10201#0 TGTTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGA 658 consensus_10201#1 TGTTTCGCATGCATAGTAATGTATGCGCTAGATTATGTGTCGAATAAATCAGATGGGAGA 360 ************************************************************ consensus_10201#0 TGCCCATGGTTTATGGTTAATAGCCAAAGCA 689 consensus_10201#1 TGCCCATGGTTTATGGTTAAA---------- 381 ******************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||