These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2141 fasta sequence [GCTTTAGCTGCTTGGCCAGCCAATAAGAAACAAACAAACACACCATGGATCATGATAAATATGCATTGCTACTCTAATAAGGAACTAAGGAAGTCAGCAAATGCAGGTGTTGTGTTTTTTTTTTCTCTGCATGGTCCTAGCTGTTTAATTGACAACTAGAATGCACACTATAAAGGGAGGAAAAGGAGGCAGCTAACATGAAAGTATCTCACAAAGTCACAGCTAATGTGCTAGTCAATTTGTTCTCTCACACACTGAGAAAGATGTTTTTTTTTTAGAACTGAGAAAGAGGTAAAGACTCCCTATTAGGGGGTTGGGTACAAGTATAGTAAAATGAACATGGTGAAAGGAGCTCACAAAATGGTAGTTAGCCACCAAATTTTTTCAAACATTTAGACCATCCATGCATATGTTTAGAAACTTATCTGGATTGTTCCAGATATTCTTAAAAATATTCTTTTAATACTATGGTTGTACCATAGCACATATATCATAACGCAAAGCTACAAAAAGGCAGTGACCATCTATCCTCTCATGTTTGACTTAACAAACACGTACACAAAAACCCAAAAAATGTGAAACAAGCAAGAACCGAAGGAGCTGCAAGCCACATCATGCCTTGCATCGTCACCAACAAATCAATAAATACCTTTCAAAATAAATAGACACCAGACATATTTTTGTGTCACTAGTATAATACAAGAATAAATGAATAGACACCAGACCTATTATTGTGTGACTGGTATAATGTATTTATATCCACACCAACATGATAGAGAGTACACGTTACACGTACTTTGTTTTGGTCTCATCTGAAGTCTGAAATCTGAAGCAAATAAACAAAGAATTGCAGAGAAGAAAAAATGTGCTCTCTTTGTGTTGACCACTTAGCTCATCCATGGAGATAAGCCCAGAGGATGCGTACAAAGCTTCTCTCCTCCGTTGAGCTGTATCCATGGTTGTTATTGCAAATTTAACAACTCCTTGTCACCATTGCACACAGCCAAAAACGCCCCTGTATTCCTGTACAGAAAACATGCACAAACTGTATTTTATTTCTTCAGCATGTGCTCTGCTTCTGTATTTTCGTCAGGGAGAAATGTCTGACCTTTGGAGAGAGGCTCAGTGTTTGGAGACTGTCATTTGCACTGTTTTATCCAATTTGGAGATAGTGGTATGCTACTGTCTACTACCATTGTTAGTAGTACTGTACTGTTTTAGAGTCTTGGACCATAAATATCTTACGAGTTTATAAGTCTCCCAAGATCTTTTTGCCGTTTACTCTTCACTGTAGTGTCCAGTTGTCCACTCCACTATTGCATCAGCTAATCGAAATCGACAATGGTGTGCAACCTAGTGCCTACCATTACATAGTCTCAAAGAAAGTGTACAATTATTTCAGTAAAGGACAGATCAGAAAAGAAAGAACATAAATACCAGCCATCTGCAAAAGTTATTACAACTACAATTTTATAATAACTTCTTTAATTTCTCTCTGCATGGCTTACATTACATTGTACACTCTGTATTCCTTGTGGTTGCGGCTATAAATAGGAGAGCACAAGAGTTGTAGCTTCCCTTGTCTTGCTCAAGTGTTCAATTTTTTGTGTGCGTTTTTCAGCTCGTGTGTGATTGAGAAGTACACAAGGAGAAGAAGGAGAAGACGACGCAGCTGCCATGGGAGAAGAGAAGCAGAATGACGAGAGGAAGAACAAGTACGCCGTCGGGTGCTCCATCATCGGCTCCATCATCTCGGTCCTCATGGGCTATGGTAAACTACATTAGAACACCTAATTGACATGTTATTATAACATTTTCGATATCGGTGATTTTAGTGAGATCAGTGATTTACCGCCGATCTCTGTCTCGTTCAGCATGTACGTGTTAGCGGGATTCACGTGTCACGTGAGTGCGGTGTGTGTGCGCGTCTTTCATGTAATCGCGCGCGAAAAAATAAAGAAAAAGAAGGAAAATTGGCATGATGAAAAATAATTAAATTGCAGACACTGGTGTGATGAATGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACCAACGACACGCAGGTGCATGTCCTCGCCGGGATCCTCAACGTGTGCGCGCTCGTCGGTTCCCTCACCGACGGCCGCGTCTCCTACT] [+] EMBL AK106326 [GCTTTAGCTGCTTGGCCAGCCAATAAGAAACAAACAAACACACCATGGATCATGATAAATATGCATTGCTACTCTAATAAGGAACTAAGGAAGTCAGCAAATGCAGGTGTTGTGTTTTTTTTTTCTCTGCATGGTCCTAGCTGTTTAATTGACAACTAGAATGCACACTATAAAGGGAGGAAAAGGAGGCAGCTAACATGAAAGTATCTCACAAAGTCACAGCTAATGTGCTAGTCAATTTGTTCTCTCACACACTGAGAAAGATGTTTTTTTTTTAGAACTGAGAAAGAGGTAAAGACTCCCTATTAGGGGGTTGGGTACAAGTATAGTAAAATGAACATGGTGAAAGGAGCTCACAAAATGGTAGTTAGCCACCAAATTTTTTCAAACATTTAGACCATCCATGCATATGTTTAGAAACTTATCTGGATTGTTCCAGATATTCTTAAAAATATTCTTTTAATACTATGGTTGTACCATAGCACATATATCATAACGCAAAGCTACAAAAAGGCAGTGACCATCTATCCTCTCATGTTTGACTTAACAAACACGTACACAAAAACCCAAAAAATGTGAAACAAGCAAGAACCGAAGGAGCTGCAAGCCACATCATGCCTTGCATCGTCACCAACAAATCAATAAATACCTTTCAAAATAAATAGACACCAGACATATTTTTGTGTCACTAGTATAATACAAGAATAAATGAATAGACACCAGACCTATTATTGTGTGACTGGTATAATGTATTTATATCCACACCAACATGATAGAGAGTACACGTTACACGTACTTTGTTTTGGTCTCATCTGAAGTCTGAAATCTGAAGCAAATAAACAAAGAATTGCAGAGAAGAAAAAATGTGCTCTCTTTGTGTTGACCACTTAGCTCATCCATGGAGATAAGCCCAGAGGATGCGTACAAAGCTTCTCTCCTCCGTTGAGCTGTATCCATGGTTGTTATTGCAAATTTAACAACTCCTTGTCACCATTGCACACAGCCAAAAACGCCCCTGTATTCCTGTACAGAAAACATGCACAAACTGTATTTTATTTCTTCAGCATGTGCTCTGCTTCTGTATTTTCGTCAGGGAGAAATGTCTGACCTTTGGAGAGAGGCTCAGTGTTTGGAGACTGTCATTTGCACTGTTTTATCCAATTTGGAGATAGTGGTATGCTACTGTCTACTACCATTGTTAGTAGTACTGTACTGTTTTAGAGTCTTGGACCATAAATATCTTACGAGTTTATAAGTCTCCCAAGATCTTTTTGCCGTTTACTCTTCACTGTAGTGTCCAGTTGTCCACTCCACTATTGCATCAGCTAATCGAAATCGACAATGGTGTGCAACCTAGTGCCTACCATTACATAGTCTCAAAGAAAGTGTACAATTATTTCAGTAAAGGACAGATCAGAAAAGAAAGAACATAAATACCAGCCATCTGCAAAAGTTATTACAACTACAATTTTATAATAACTTCTTTAATTTCTCTCTGCATGGCTTACATTACATTGTACACTCTGTATTCCTTGTGGTTGCGGCTATAAATAGGAGAGCACAAGAGTTGTAGCTTCCCTTGTCTTGCTCAAGTGTTCAATTTTTTGTGTGCGTTTTTCAGCTCGTGTGTGATTGAGAAGTACACAAGGAGAAGAAGGAGAAGACGACGCAGCTGCCATGGGAGAAGAGAAGCAGAATGACGAGAGGAAGAACAAGTACGCCGTCGGGTGCTCCATCATCGGCTCCATCATCTCGGTCCTCATGGGCTATGGTAAACTACATTAGAACACCTAATTGACATGTTATTATAACATTTTCGATATCGGTGATTTTAGTGAGATCAGTGATTTACCGCCGATCTCTGTCTCGTTCAGCATGTACGTGTTAGCGGGATTCACGTGTCACGTGAGTGCGGTGTGTGTGCGCGTCTTTCATGTAATCGCGCGCGA ] [+] EMBL CB669346 [ TCGGTTCCATCATCTCGGTCCTCATGGGCTATGGTAAACTACATTAGAACACCTAATTGACATGTAATTATAACGTTTTCCATATCGGGGATTTTAGTGAGATCAATGATTTACCGCCGATCTCTGTCTCGTTCAGCATGTACGTGTTAGCGGGATTCACGTGTCACCTTAGTGCCGTGTGTGTGCCCGTCTTTCATGTAATCTCGCGCGAAAAAATAAAGAAAAAGAAGGAAAATTGGCATGATGAAAAATAATTAAATTGCAGACACTGGTGTGATGAATGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACCAACGACACGCAGGTGCATGTCCTCGCCGGGATCCTCAACGTGTGCGCGCTCGTCGGTTCCCTCACCGACGGCCGCGTCTCCTACT] consensusID : consensus_10207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1979 fasta sequence [ATATTATCCAAACACCATATAAACCTTTCTCACCTTCCGGATTCCGGCCATCTTCGTTTCTCGTCTTCGCCGGCGGCCGCCGCATTTCTGATCGGCCGATATATATCGGATCTTCAGACTGGTCGCAGCAGCTCGTGTGTGATTGAGAAGTACACAAGGAGAAGAAGGAGAAGACGACGCAGCTGCCATGGGAGAAGAGAAGCAGAATGACGAGAGGAAGAACAAGTACGCCGTCGGGTGCTCCATCATCGGCTCCATCATCTCGGTCCTCATGGGCTATGACACTGGTGTGATGAGTGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACGAACGACACGCAGGTGCAGGTCCTCGCCGGGATCCTCAACGTGTGCGCGCTCGTCGGCTCCCTCACCGCCGGCCGCGTCTCCGACTGCGTCGGCCGCCGCCTCACCATCTCCCTCGCCGCCTGCATCTTCCTCGTGGGCTCCGTCCTCATGGGCCTCGCGCCCAACTTCGCCACGCTCCTCGCCGGCCGCTGCGTCGCCGGCGTCGGCGTCGGCTACGCGCTCATGATTGCGCCGGTGTACGCCGCCGAGATCGCCTCCGCCGACATCCGCGGCTCGCTCACCTCGCTCCCGGAGATCTGCATCAGCTTCGGGATACTCATCGGCTACGTGGCCAACTACCTGCTCGCCAAGCTGCCGCTGGTGTACGGGTGGCGCGCCATGCTCGGCCTCGGCGCGCTCCCGAGCGCCGCGCTCGCGCTCGGCGTGCTCGCCATGCCCGAGTCCCCGCGGTGGCTCGTCGTCCAGGGCCGCGCCGAGGAGGCGCTCTCCGTGCTCCGCCGCGTGTGCGACAGGCCCAGCGAGGCCGACGCGCGGCTCGCGGAGATCAAGGCCGCGGCGGGGCTCGCCGACGACGACGGCGCCGCCGCCAACGCGGGCAGCGGCGGCAAGGGCGTGTGGAGGGAGCTGTTCCTGCACCCGACGCCGCCGGTGCGGCGCATCGTCATCGCCGCCCTGGGGATCCACTTCTTCCAGCACCTCACCGGCATCGAGGCCGTGGTGCTCTACAGCCCGCGCATCTTCAAGGCGGCCGGCATCGCCAGCCGCAACTCGGTGCTCGCTGCGACCATCGGCGTGGGCGTCACCAAGACGGCGTTCATCCTCACCGCCATCCTCCTCGTCGACCGCATAGGCCGGCGGCCGCTCTACCTGTCAAGCCTCGCCGGCATCATCGCCTCGCTCGCCTGCCTCGGCATGGGCCTCACCGTCATCGAGCGGTCGCCGCCGCACCACTCGCCGGCGTGGGCCGTCGTGCTCGCCATCGCCACCGTGTTCACCTTCGTCGCCTCCTTCTCCATCGGCGTCGGGCCGATCACCTGGGCCTACAGCTCGGAGGTGTACCCGCTCCGCCTCCGCGCGCAGGGCGCCAGCGTCGGCGTCGCCATCAACCGCGTGATGAACGCCGGCGTGTCCATGACGTTCGTGTCGCTCTACAAGGCCATCACCATCGGCGGCGCCTTCTTCCTCTTCGCCGGGCTCGCCGTCGCCGCCGCCACGTTCTTCTACCTCCTGTGCCCGGAGACGCAGGGCAAGCCGCTGGAGGAGATCGAGGAGGTGTTCAGCCAGGGGTGGCGCGCGCGGCGCCGGGCGTCGGCGGCGGCCGTCGAGATGCCGGCCTCCGGCGGCGGCGGCGGCGGCGGCGCCCCGATGGCGTAGTGCGAAGTGCACCGCGGTGCGCGTGCGTGAACAAAGTGCAACGCACGCGTGTGGATGACGTGGAAGTGTTTGTCACTTGGGGAAAAGA-ACGAATATTCGCTAGCTAGCTAGTGGTACAGATGGCTAGAGATTGAAATGGAAGGGACCTGATACTACTACTGTTGCATTTGTAGGAAA-CGACTA-CTAGCTAACAATGTCATTCTGGTGTCGTGTGGTGTTTAGAAAAAACAAAATCGTTGAAATACAGTAAAAAAAATTAAGAAAATAAAAA] [+] EMBL AK121279 [ATATTATCCAAACACCATATAAACCTTTCTCACCTTCCGGATTCCGGCCATCTTCGTTTCTCGTCTTCGCCGGCGGCCGCCGCATTTCTGATCGGCCGATATATATCGGATCTTCAGACTGGTCGCAGCAGCTCGTGTGTGATTGAGAAGTACACAAGGAGAAGAAGGAGAAGACGACGCAGCTGCCATGGGAGAAGAGAAGCAGAATGACGAGAGGAAGAACAAGTACGCCGTCGGGTGCTCCATCATCGGCTCCATCATCTCGGTCCTCATGGGCTATGACACTGGTGTGATGAGTGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACGAACGACACGCAGGTGCAGGTCCTCGCCGGGATCCTCAACGTGTGCGCGCTCGTCGGCTCCCTCACCGCCGGCCGCGTCTCCGACTGCGTCGGCCGCCGCCTCACCATCTCCCTCGCCGCCTGCATCTTCCTCGTGGGCTCCGTCCTCATGGGCCTCGCGCCCAACTTCGCCACGCTCCTCGCCGGCCGCTGCGTCGCCGGCGTCGGCGTCGGCTACGCGCTCATGATTGCGCCGGTGTACGCCGCCGAGATCGCCTCCGCCGACATCCGCGGCTCGCTCACCTCGCTCCCGGAGATCTGCATCAGCTTCGGGATACTCATCGGCTACGTGGCCAACTACCTGCTCGCCAAGCTGCCGCTGGTGTACGGGTGGCGCGCCATGCTCGGCCTCGGCGCGCTCCCGAGCGCCGCGCTCGCGCTCGGCGTGCTCGCCATGCCCGAGTCCCCGCGGTGGCTCGTCGTCCAGGGCCGCGCCGAGGAGGCGCTCTCCGTGCTCCGCCGCGTGTGCGACAGGCCCAGCGAGGCCGACGCGCGGCTCGCGGAGATCAAGGCCGCGGCGGGGCTCGCCGACGACGACGGCGCCGCCGCCAACGCGGGCAGCGGCGGCAAGGGCGTGTGGAGGGAGCTGTTCCTGCACCCGACGCCGCCGGTGCGGCGCATCGTCATCGCCGCCCTGGGGATCCACTTCTTCCAGCACCTCACCGGCATCGAGGCCGTGGTGCTCTACAGCCCGCGCATCTTCAAGGCGGCCGGCATCGCCAGCCGCAACTCGGTGCTCGCTGCGACCATCGGCGTGGGCGTCACCAAGACGGCGTTCATCCTCACCGCCATCCTCCTCGTCGACCGCATAGGCCGGCGGCCGCTCTACCTGTCAAGCCTCGCCGGCATCATCGCCTCGCTCGCCTGCCTCGGCATGGGCCTCACCGTCATCGAGCGGTCGCCGCCGCACCACTCGCCGGCGTGGGCCGTCGTGCTCGCCATCGCCACCGTGTTCACCTTCGTCGCCTCCTTCTCCATCGGCGTCGGGCCGATCACCTGGGCCTACAGCTCGGAGGTGTACCCGCTCCGCCTCCGCGCGCAGGGCGCCAGCGTCGGCGTCGCCATCAACCGCGTGATGAACGCCGGCGTGTCCATGACGTTCGTGTCGCTCTACAAGGCCATCACCATCGGCGGCGCCTTCTTCCTCTTCGCCGGGCTCGCCGTCGCCGCCGCCACGTTCTTCTACCTCCTGTGCCCGGAGACGCAGGGCAAGCCGCTGGAGGAGATCGAGGAGGTGTTCAGCCAGGGGTGGCGCGCGCGGCGCCGGGCGTCGGCGGCGGCCGTCGAGATGCCGGCCTCCGGCGGCGGCGGCGGCGGCGGCGCCCCGATGGCGTAGTGCGAAGTGCACCGCGGTGCGCGTGCGTGAACAAAGTGCAACGCACGCGTGTGGATGACGTGGAAGTGTTTGTCACTTGGGGAAAAGA ACGAATATTCGCTAGCTAGCTAGTGGTACAGATGGCTAGAGATTGAAATGGAAGGGACCTGATACTACTACTGTTGCATTTGTAGGAAA CGACTA CTAGCTAACAATGTCATTCTGGTGTCGTGTGGTGTTTAGAAAAAACAAAATCGTTGAAATACAGTAAAAAAAATTAAGAAAATAAAAA] [-] EMBL CB669345 [ CGCAACTCGGTGCTCGCTGCGACCATCGGCGTGGGCGTCACCAAGACGGCGTTCATCCTCACCGCCATCCTCCTCGTCGACCGCATAGGCCGGCGGCCGCTCTACCTGTCAAGCCTCGCCGGCATCATCGCCTCGCTCGCCTGCCTCGGCATGGGCCTCACCGTCATCGAGCGGTCGCCGCCGCACCACTCGCCGGCGTGGGCCGTCGTGCTCGCCATCGCCACCGTGTTCACCTTCGTCGCCTCCTTCTCCATCGGCGTCGGGCCGATCACCTGGGCCTACAGCTCGGAGGTGTACCCGCTCCGCCTCCGCGCGCAGGGCGCCAGCGTCGGCGTCGCCATCAACCGCGTGATGAACGCCGGCGTGTCCATGACGTTCGTGTCGCTCTACAAGGCCATCACCATCGGCGGCGCCTTCTTCCTCTTCGCCGGGCTCGCCGTCGCCGCCGCCACGTTCTTCTACCTCCTGTGCCCGGAGACGCAGGGCAAGCCGCTGGAGGAGATCGAGGAGGTGTTCAGCCAGGGGTGGCGCGCGCGGCGCCGGGCGTCGGCGGCGGCCGTCGAGATGCCGGCCTCCGGCGGCGGCGGCGGCGGCGGCGCCCCGATGGCGTAGTGCGAAGTGCACCGCGGTGCGCGTGCGTGAACAAAGTGCAACGCACGCGTGTGGATGACGTGGAAGTGTTTGTCACTTGGGGAAAAGACACGAATATTCGCTAGCTAGCTAGTGGT ] [-] EMBL CB642398 [ CGGCGGCCGCTTTACCTGTCAAGCCTCGCCGGCATCATCGCCTCGCTCGCCTGCCTCGGCATGGGCCTCACCGTCATCGAGCGGTCGCCGCCGCACCACTCGCCGGCGTGGGCCGTCGTGCTCGCCATCGCCACCGTGTTCACCTTCGTCGCCTCCTTCTCCATCGGCGTCGGGCCGATCACCTGGGCCTACAGCTCGGAGGTGTACCCGCTCCGCCTCCGCGCGCAGGGCGCCAGCGTCGGCGTCGCCATCAACCGCGTGATGAACGCCGGCGTGTCCATGACGTTCGTGTCGCTCTACAAGGCCATCACCATCGGCGGCGCCTTCTTCCTCTTCGCCGGGCTCGCCGTCGCCGCCGCCACGTTCTTCTACCTCCTGTGCCCGGAGACGCAGGGCAAGCCGCTGGAGGAGATCGAGGAGGTGTTCAGCCAGGGGTGGCGCGCGCGGCGCCGGGCGTCGGCGGCGGCCGTCGAGATGCCGGCCTCCGGCGGCGGCGGCGGCGGCGGCGCCCCGATGGCGTAGTGCGAAGTGCACCGCGGTGCGCGTGCGTGAACAAAGTGCAACGCACGCGTGTGGATGACGTGGAAGTGTTTGTCACTTGGGGAAAAGA ACGAATATTCGCTAGCTAGCTAGTGGTACAGATGGCTAGAGATTGAAATGGAAGGGACCTGATACTACTACTGTTGCATTTGTAGGAAAGCGACTATCTAGCTAACAATGTCAaacaaaaa ] consensusID : consensus_10207#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [GTGCGTTTTTCAGCTCGTGTGTGATTGAGAAGTACACAAGGAGAAGAAGGAGAAGACGACGCAGCTGCCATGGGAGAAGAGAAGCAGAATGACGAGAGGAAGAACAAGTACGCCGTCGGGTGCTCCATCATCGGCTCCATCATCTCGGTCCTCATGGGCTATGACACTGGTGTGATGAGTGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACGAACGACACGCAGGTGCAGGTCCTCGCCGGGATCCTCAACGTGTGCGCGCTCGTCGGCTCCCTCACCGCCGGCCGCGTCTCCGACTGCGTCGGCCGCCGCCTCACCATCTCCCTCGCCGCCTGCATCTTCCTCGTGGGCTCCGTCCTCATGGGCCTCGCGCCCAACTTCGCCACGCTCCTCGCCGGCCGCTGCGTCGCCGGCGTCGGCGTCGGCTACGCGCTCATGATTGCGCCGGTGTACGCCGCCGAGATCGCCTCCGCCGACATCCGCGGCTCGCTCACCTCGCTCCCGGAGATCTGCATCAGCTTCGGGATACTCATCGGCTACGTGGCCAACTACCTGCTCGCCAAGCTGCCGCTGGTGTACGGGTGGCGCGCCATGCTCGGCCTCGGCGCGCTCCCGAGCGCCGCGCTCGCGCTCGGCGTGCTCGCCATGCCCGAGTCCCCGCGGTGGCTCGTCGTCCAGGGCCGCGCCGAGGAGGCGCTCTCCGTGCTCCGCCGCGTGTGCGACAGGCCCAGCGAGGCCGACGCGCGGCTCGCGGAGATCAAGGCGCGGCG] [+] EMBL CB642397 [GTGCGTTTTTCAGCTCGTGTGTGATTGAGAAGTACACAAGGAGAAGAAGGAGAAGACGACGCAGCTGCCATGGGAGAAGAGAAGCAGAATGACGAGAGGAAGAACAAGTACGCCGTCGGGTGCTCCATCATCGGCTCCATCATCTCGGTCCTCATGGGCTATGACACTGGTGTGATGAGTGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACGAACGACACGCAGGTGCAGGTCCTCGCCGGGATCCTCAACGTGTGCGCGCTCGTCGGCTCCCTCACCGCCGGCCGCGTCTCCGACTGCGTCGGCCGCCGCCTCACCATCTCCCTCGCCGCCTGCATCTTCCTCGTGGGCTCCGTCCTCATGGGCCTCGCGCCCAACTTCGCCACGCTCCTCGCCGGCCGCTGCGTCGCCGGCGTCGGCGTCGGCTACGCGCTCATGATTGCGCCGGTGTACGCCGCCGAGATCGCCTCCGCCGACATCCGCGGCTCGCTCACCTCGCTCCCGGAGATCTGCATCAGCTTCGGGATACTCATCGGCTACGTGGCCAACTACCTGCTCGCCAAGCTGCCGCTGGTGTACGGGTGGCGCGCCATGCTCGGCCTCGGCGCGCTCCCGAGCGCCGCGCTCGCGCTCGGCGTGCTCGCCATGCCCGAGTCCCCGCGGTGGCTCGTCGTCCAGGGCCGCGCCGAGGAGGCGCTCTCCGTGCTCCGCCGCGTGTGCGACAGGCCCAGCGAGGCCGACGCGCGGCTCGCGGAGATCAAGGCGCGGCG] consensusID : consensus_10207#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [ACCTGCATCTTCCTCGCGGGCTCCGTCCTCATGGGCCTCGCCCCCAACTTCGCCACACTCCTCGCCGGCCGCTGTGGCGTCGGCGTCGGCTCCCTTGGCGTTCCTGCACCCGACGCCGCCGGTGCGGCGCATCGTCATCGCCGCCCTGGGGATCTACTTCTTCCAGCACCTCACCGGCATAGAGGTCGTGGTGCTGTACGGCCCGAGCATCTTCAAGGCGGCCAGCATAGCTAGCCGCAACTCGGTGCTCGCGGCGACGATCGGCGTGGGCGTAACCAAGACGGCGTTCATCATCGCCTCCCTTGATGCGTCTCAAGCTGGCGTCCCCGGCCGCTGTAGCCCGCCGCCGCTCCGCCTACTCCAGCAGCGCCATTAACGACACCCTCCCGCCGTTGCCGGAGCCGTGCATGGAGCAGCGACCATCCTTGTCGACGTCAGGAGCGGTTTCCTTTGAGGACGCCAGAGCCATGCCGCTGGGAAAGGAGTTTCCTCAAGTCCGTGCTGGTCGGCGCGTGAAATTTGGACAATTTGTCGTGGCTTATTTTGTTTTGTTTTTTCAATCTTCAATTTCTTGTTTCGAGATGTTGAACTGATGTAGTGGTTTTGGTTTTGAGCATTGTAGGATCTGTCGTCATTGTTTAGCTCGTGTATAGATGTGTCCCAGCACT] [+] EMBL AK062341 [ACCTGCATCTTCCTCGCGGGCTCCGTCCTCATGGGCCTCGCCCCCAACTTCGCCACACTCCTCGCCGGCCGCTGTGGCGTCGGCGTCGGCTCCCTTGGCGTTCCTGCACCCGACGCCGCCGGTGCGGCGCATCGTCATCGCCGCCCTGGGGATCTACTTCTTCCAGCACCTCACCGGCATAGAGGTCGTGGTGCTGTACGGCCCGAGCATCTTCAAGGCGGCCAGCATAGCTAGCCGCAACTCGGTGCTCGCGGCGACGATCGGCGTGGGCGTAACCAAGACGGCGTTCATCATCGCCTCCCTTGATGCGTCTCAAGCTGGCGTCCCCGGCCGCTGTAGCCCGCCGCCGCTCCGCCTACTCCAGCAGCGCCATTAACGACACCCTCCCGCCGTTGCCGGAGCCGTGCATGGAGCAGCGACCATCCTTGTCGACGTCAGGAGCGGTTTCCTTTGAGGACGCCAGAGCCATGCCGCTGGGAAAGGAGTTTCCTCAAGTCCGTGCTGGTCGGCGCGTGAAATTTGGACAATTTGTCGTGGCTTATTTTGTTTTGTTTTTTCAATCTTCAATTTCTTGTTTCGAGATGTTGAACTGATGTAGTGGTTTTGGTTTTGAGCATTGTAGGATCTGTCGTCATTGTTTAGCTCGTGTATAGATGTGTCCCAGCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10207#1 --------ATATTATCCAAACACCATATAAACCTTTCTCACCTTCCGGATTCCGGCCATC 52 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 GCTTTAGCTGCTTGGCCAGCCAATAAGAAACAAACAAACACACCATGGATCATGATAAAT 60 consensus_10207#1 TTCGTTTCTCGTCTTCGCCGGCGGCCGCCGCATTTCTGATCGGCCGATATATATCGGATC 112 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 ATGCATTGCTACTCTAATAAGGAACTAAGGAAGTCAGCAAATGCAGGTGTTGTGTTTTTT 120 consensus_10207#1 TTCAGACTGGTCGCAGC-AGCTCGTGTGTGATTGAGAAGTACACA-AGGAGAAGAAGGAG 170 consensus_10207#2 ------GTGCGTTTTTC-AGCTCGTGTGTGATTGAGAAGTACACA-AGGAGAAGAAGGAG 52 consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 TTTTCTCTGCATGGTCCTAGCTGTTTAATTGACAACTAGAATGCACACTATAAAGGGAGG 180 consensus_10207#1 AAGACGACGCAGCTGCCATGGGAGAAGAG-----AAGCAGAATGACGAGAGGAAGAACAA 225 consensus_10207#2 AAGACGACGCAGCTGCCATGGGAGAAGAG-----AAGCAGAATGACGAGAGGAAGAACAA 107 consensus_10207#3 ---ACC-TGCATCTTCCTCGCGGGCTCCGTCCTCATGGGCCTCGCCCCCAACTTCGCCAC 56 consensus_10207#0 AAAAGGAGGCAGCTAACATGAAAGTATCTCA---CAAAGTCACAGCTAATGTGCTAGTCA 237 * *** ** * * * * consensus_10207#1 GTACGCCGTCGGGTGCTCCATCATCGGC-TCCATCATCTCGGTCCTC-ATGGGCT--ATG 281 consensus_10207#2 GTACGCCGTCGGGTGCTCCATCATCGGC-TCCATCATCTCGGTCCTC-ATGGGCT--ATG 163 consensus_10207#3 ACTCCTCGCCGGCCGCTGTGGCGTCGGCGTCGGCTCCCTTGGCGTTC-CTGCACCCGACG 115 consensus_10207#0 ATTTGTTCTCTCACACACTGAGAAAGATGTTTTTTTTTTAGAACTGAGAAAGAGGTAAAG 297 * * * * * * * * consensus_10207#1 ACACTGGTGTGATGAGTGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACGAACGACA 341 consensus_10207#2 ACACTGGTGTGATGAGTGGGGCGATGCTGTTCATCAAGGAGGACCTGAAGACGAACGACA 223 consensus_10207#3 CCGCCGGTGCGGCGCATCGT-CATCGCCGCCC-TGGGGATCTACTTCT--TCCAGCACCT 171 consensus_10207#0 ACTCCCTATTAGGGGGTTGGGTACAAGTATAGTAAAATGAACATGGTGAAAGGAGC-TCA 356 * * * * * * * * * consensus_10207#1 CGCAGGTGCAGGTCCTCGCCGGGATCCTC--AACGTGTGCGCGCTCGTCGGCTCCCTC-- 397 consensus_10207#2 CGCAGGTGCAGGTCCTCGCCGGGATCCTC--AACGTGTGCGCGCTCGTCGGCTCCCTC-- 279 consensus_10207#3 CACCGGCATAGAGG-TCGTGGTGCTGTAC--GGCCCGAGCATCTTCAAGGCGGCCAGC-- 226 consensus_10207#0 CAAAATGGTAGTTAGCCACCAAATTTTTTCAAACATTTAGACCATCCATGCATATGTTTA 416 * ** * * * ** * consensus_10207#1 -ACCGCCGGCCGCGTCTC--CGACTGCGTCGGCCGCCGCC---TCACCATCTCCCTCGCC 451 consensus_10207#2 -ACCGCCGGCCGCGTCTC--CGACTGCGTCGGCCGCCGCC---TCACCATCTCCCTCGCC 333 consensus_10207#3 -ATAGCTAGCCGCAACTCGGTGCTCGCGGCGACGATCGGCG--TGGGCGTAACCAAGACG 283 consensus_10207#0 GAAACTTATCTGGATTGTTCCAGATATTCTTAAAAATATTCTTTTAATACTATGGTTGTA 476 * * * * consensus_10207#1 GCCTGCATCTTC--CTCGTGGGCTCCGTCCTCA--TGGGCCTCGCGCCCAACTTCGCCAC 507 consensus_10207#2 GCCTGCATCTTC--CTCGTGGGCTCCGTCCTCA--TGGGCCTCGCGCCCAACTTCGCCAC 389 consensus_10207#3 GCGTTCATCATCGCCTCCCTTGATGCGTCTCAAGCTGGCGTCCCCGGCCGCTGTAGCCCG 343 consensus_10207#0 CCATAGCACATATATCATAACGCAAAGCTACAAAAAGGCAGTGACCATCTATCCTCTCAT 536 * * * * * * * ** * * * consensus_10207#1 GCTC--CTCGCCGGCCGC-TGCGTCGCCGGCGTCGGCGTCGGCTACGCGCTCATGATTGC 564 consensus_10207#2 GCTC--CTCGCCGGCCGC-TGCGTCGCCGGCGTCGGCGTCGGCTACGCGCTCATGATTGC 446 consensus_10207#3 CCGC--CGCTCCGCCTAC-TCCAGCAGCGCCATTAACGACACCCTCCCGCCGTTGCCGGA 400 consensus_10207#0 GTTTGACTTAACAAACACGTACACAAAAACCCAAAAAATGTGAAACAAGCAAGAACCGAA 596 * * * * * * * ** consensus_10207#1 GCCGGTGTACGCCGCCGAGATCGCCTCCGCCGACATCCGCGGCTCGCT-----CACCTC- 618 consensus_10207#2 GCCGGTGTACGCCGCCGAGATCGCCTCCGCCGACATCCGCGGCTCGCT-----CACCTC- 500 consensus_10207#3 GCCG-TGCATGGAGCAGCGACCATCCTTGTCGACGTCAGGAGCGGTTT-----CCTTTGA 454 consensus_10207#0 GGAGCTGCAAGCCACATC-ATGCCTTGCATCGTCACCAACAAATCAATAAATACCTTTCA 655 * * ** * * * * ** * * * * * consensus_10207#1 -GCTCC-CGGAGATCTGCATCAGCTTCGGGATACTCATCGGCTACGTGGCCAACTACCTG 676 consensus_10207#2 -GCTCC-CGGAGATCTGCATCAGCTTCGGGATACTCATCGGCTACGTGGCCAACTACCTG 558 consensus_10207#3 GGACGC-CAGAGCCATGCCGCTGGGAAAGGAGTTTCCTCAAGTCCGTG---------CTG 504 consensus_10207#0 AAATAAATAGACACCAGACATATTTTTGTGTCACTAGTATAATACAAGAATAAATGAATA 715 ** * * * * * * * * consensus_10207#1 CTCGCCAAGCTGCCGCTGGTGTA--CGG-GTGGCGCGCCATGCTCGGCCTCGGCGCGCTC 733 consensus_10207#2 CTCGCCAAGCTGCCGCTGGTGTA--CGG-GTGGCGCGCCATGCTCGGCCTCGGCGCGCTC 615 consensus_10207#3 GTCGGCGCG-------TGAAATT--TGG-ACAATTTGTCGTGGCTTATTTTGTTTTGTTT 554 consensus_10207#0 GACACCAGACCTATTATTGTGTGACTGGTATAATGTATTTATATCCACACCAACATGATA 775 * * * * ** * * consensus_10207#1 CCGAGCGCCGCGCTCGCGCTCGGCGTGCTCGCCATGCCCGAGTCC------CCGCGGTGG 787 consensus_10207#2 CCGAGCGCCGCGCTCGCGCTCGGCGTGCTCGCCATGCCCGAGTCC------CCGCGGTGG 669 consensus_10207#3 TT-----TCAATCTTCAATTTCTTGT-TTCGAGATGTT-GAACTG------ATGTAGTGG 601 consensus_10207#0 GAGAGTACACGTTACACGTACTTTGTTTTGGTCTCATCTGAAGTCTGAAATCTGAAGCAA 835 ** * * ** * * consensus_10207#1 CT---CGTCGTCCAGGGCCGCGCCGAGGAGGCGCTCTCCGTGCTCCGC-CGCGTGTGCGA 843 consensus_10207#2 CT---CGTCGTCCAGGGCCGCGCCGAGGAGGCGCTCTCCGTGCTCCGC-CGCGTGTGCGA 725 consensus_10207#3 TT---T-TGGTTTTGAGCATTGT--AGGATCTGTCGTCATTGTTTAGCTCGTGTATAGAT 655 consensus_10207#0 ATAAACAAAGAATTGCAGAGAAGAAAAAATGTGCTCTCTTTGTGTTGACCACTTAGCTCA 895 * * * * * * ** ** * * * consensus_10207#1 CAGGCCCAGCGAGGCCGACGCGCGGCTCGCGGAGATCAAGGCCGCGGCGGGGCTCGCCGA 903 consensus_10207#2 CAGGCCCAGCGAGGCCGACGCGCGGCTCGCGGAGATCAAGGC-GCGGCG----------- 773 consensus_10207#3 GTGTCCCAGCACT----------------------------------------------- 668 consensus_10207#0 TCCATGGAGATAAGCCCAGAGGATGCGTACAAAGCTTCTCTCCTCCGTTGAGCT-GTATC 954 ** consensus_10207#1 CGACGACGGCGCCGCCGCCAACGCGGGCAGCGGCGGCAAGGGCGTGTGGAGGGAGCTGTT 963 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 CATGGTTGTTATTGCAAATTTAACAACTCCTTGTCACCATTGCACACAGCCAAAAACGCC 1014 consensus_10207#1 CCTGCACCCG---ACGCCGCCGGTGCGGCGCATCGTCATCGCCGCCCTGGGGATCCACTT 1020 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 CCTGTATTCCTGTACAGAAAACATGCACAAACTGTATTTTATTTCTTCAGCATGTGCTCT 1074 consensus_10207#1 CTTCCAGCACCTCACCGGCATCGAGGCCGTGGTGCTCTACAGCCCGCGCATCTTCAAGGC 1080 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 GCTTCTGTATTTTCGTCAGGGAGAAATGTCTGACCTTTGGAGAGAGGCTCAGTGTTTGGA 1134 consensus_10207#1 GGCCGGCATCGCCAGCCGCAACTCGGTGCTCGCTGCGACCATCGGCGTGGGCGTCACCAA 1140 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 GACTGTCATTTGCACTGTTTTATCCAATTTGGAGATAGTGGTATGCTACTGTCTACTACC 1194 consensus_10207#1 GACGGCGTTCATCCTCACCGCCATCCTCCTCGTCGACCGCATAGGCCGGCGGCCGCTCTA 1200 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 ATTGTTAGTAGTACTGTACTGTTTTAGAGTCTTGGACCATAAATATCTTACGAGTTTATA 1254 consensus_10207#1 CCTGTCAAGCCTCGCCGGCATCATCGCCTCGCTCGCCTGCCTCGGCATGGGCCTCACCGT 1260 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 AGTCTCCCAAGATCTTTTTGCCGTTTACTCTTCACTGTAGTGTCCAGTTGTCCACTCCAC 1314 consensus_10207#1 CATCGAGCGGTCGCCGCCGCACCACTCGCCGGCGTGGGCCGTCGTGCTCGCCATCGCCAC 1320 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 TATTGCATCAGC-TAATCGAAATCGACAATGGTGTGCAACCTAGTGCCTACCATTACATA 1373 consensus_10207#1 CGTGTTCACCTTCGTCGCCTCCTTCTCCATCGGCGTCGGGCCGATCACCTGGG--CCTAC 1378 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 GTCTCAAAGAAAGTGTACAATTATTTCAGTAAAGGACAGATCAGAAAAGAAAGAACATAA 1433 consensus_10207#1 AGCTCGGAGGTGTACCCGCTCCGCCTCCGCGCGCAGGGCGCCAGCGTCGGCGTCGCCATC 1438 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 ATACCAGCCATCTGCAAAAGTTATTACAACTACAATTTTATAATAACTTCTTTAATTTCT 1493 consensus_10207#1 AACCGCGTGATGAACGCCGGCGTGTCCATGACGTTCGTGTCGCTCTACAAGGCCATCACC 1498 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 CTCTGCATGGCTTACATTACATTGTACACTCTGTATTCCTTGTGGTTGCGGCTATAAATA 1553 consensus_10207#1 ATCGGCGGCGCCTTCTTCCTCTTCGCCGGGCTCGCCGTCGCCGCCGCCACGTTCTTCTAC 1558 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 GGAGAGCACAAGAGTTGTAGCTTCCCTTGTCTTGCTCAAGTGTTCAATTTTTTGTGTGCG 1613 consensus_10207#1 CTCCTGTGCCCGGAGACGCAGGGCAAG--CCGCTGGAGGAGATCGAGGAGGTGTTCAGCC 1616 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 TTTTTCAGCTCGTGTGTGATTGAGAAGTACACAAGGAGAAGAAGGAGAAGACGACGCAGC 1673 consensus_10207#1 AGGGGTGGCGCGCGCGGCGCCGGGCGTCGGCGGCGGCCGTCGAGATGCCGGC-----CTC 1671 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 TGCCATGGGAGAAGAGAAGCAGAATGACGAGAGGAAGAACAAGTACGCCGTCGGGTGCTC 1733 consensus_10207#1 CGGCGGCGGCGGCGGCGGCGGCGCCCCGATGGCGTAGTGCGAAGTGCACCGCGGTGCGCG 1731 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 CATCATCGGCTCCATCATCTCGGTCCTCATGGGCTATGGTAAACTACATTAGAACACCTA 1793 consensus_10207#1 TGCGTGAACAAAGTGCAACGCACGCG-TGTGGATGACGTGGAAGTGTTTGTCACTTGGGG 1790 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 ATTGACATGTTATTATAACATTTTCGATATCGGTGATTTTAGTGAGATCAGTGATTTACC 1853 consensus_10207#1 AAAAGAACGAATATTCGCTAGCTAGCTAGTGGTACAGATGGCTAGAGATTGAAATGGAAG 1850 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 GCCGATCTCTGTCTCGTTCAGCATGTACGTGTTAGCGGGATTCACGTGTCACGTGAGTGC 1913 consensus_10207#1 GGACCTGATAC-TACTACTGTTGCATTTGTAGGAAACGACTACTAGCTAACAATGTCATT 1909 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 GGTGTGTGTGCGCGTCTTTCATGTAATCGCGCGCGAAAAAATAAAGAAAAAGAAGGAAAA 1973 consensus_10207#1 CTGGTGTCGTGTGGTGTTTAGAAAAAACAAAATCGTTGAAATACAGTAAAAAAAATTAAG 1969 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 TTGGCATGATGAAAAATAATTAAATTGCAGACACTGGTGTGATGAATGGGGCGATGCTGT 2033 consensus_10207#1 AAAATAAAAA-------------------------------------------------- 1979 consensus_10207#2 ------------------------------------------------------------ consensus_10207#3 ------------------------------------------------------------ consensus_10207#0 TCATCAAGGAGGACCTGAAGACCAACGACACGCAGGTGCATGTCCTCGCCGGGATCCTCA 2093 consensus_10207#1 ------------------------------------------------ consensus_10207#2 ------------------------------------------------ consensus_10207#3 ------------------------------------------------ consensus_10207#0 ACGTGTGCGCGCTCGTCGGTTCCCTCACCGACGGCCGCGTCTCCTACT 2141 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||