These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1156 fasta sequence [TTTGGAGCTCTCGGGTCGGGATCGATCGATTGATCGGAGAGGAAGGGGAAGAACTCCGGAGGGGGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCAGCGGCGGAACGCGGAGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGCCTCAAGGTCATCTGCCCCATCTGCAAGGTGACGAATGAATCCGTCTCCTCTTCCCTTCCTGCTTGCTAATCCAACCAGTAGCTTGTAGCCTGCCGTATTCGGTATTCCCTCCCCAGCCCTAAGGCTAGACCGCTAGATTGGATGGATTCATGGAGGATTCGAGGGGATGGCTGGATCTTTAGCTTCTTGTTATCGTCTCATCCACGATCCACCCAGCCCTATGCTCCTATCCCATGCGATCTGAAAATCTCGAGCCGAGTGATCGATTTTGTCCGTCTTCGTCTATAGTCCCCGGATGCACCCCAATTACGGGGTAAGGAGAGACAGGGAGTTGATGTGGAAATTTCATAGGGGATAATTTTCTATTATTGTAATTGTTCTAACTTCGTCTCTCTAAGCACTGCATCTAGCCTGCCTGCCAAGGGTGGAACTAGTATGATTACATTACCCTAGTGATGTTCTTTTGGGAGATATTGCTGCTGTTATATTGTTTGTCCATTACCATTTCTATGATAATCACCGATCAAGGGC-GGATCCAGAAACAAAAAGTTGGGGGGACTCAAATACTGAGTACACCGATATAAACACATAA-TCTCAGTATTAAACTATGCTAAAATGCTATTATGAGACCTTTAGCACCTCCTACCTTATCAACTATATTCCCCTGCACCCAC-GTTGGATCCGCCCCTGCCTCTGATGAATACTGTGTTATGGTTGAACAATCAGGAAGGGTTGGGGAATATAGTTCTAGGCAAAATTTGTAGTTGGATCAATCATTTATTCTCAGTTTTGGTTATATTATACTGATGAGTGTGTAGTCGAGAGGTAGGTCCAAAGATGAGCATCTTTAAAGGAGAAAATTGCATCTCAGTGTCTGTACTGCAAGTTTTTGGTTGGTGCCTATTAGTACCACATTTTTTCCCCTTTGGGAAAATATCACACTGCTCATATCTTCCATCTGAACTATTTATGTTAA] [+] EMBL AK121308 [TTTGGAGCTCTCGGGTCGGGATCGATCGATTGATCGGAGAGGAAGGGGAAGAACTCCGGAGGGGGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCAGCGGCGGAACGCGGAGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGCCTCAAGGTCATCTGCCCCATCTGCAAGGTGACGAATGAATCCGTCTCCTCTTCCCTTCCTGCTTGCTAATCCAACCAGTAGCTTGTAGCCTGCCGTATTCGGTATTCCCTCCCCAGCCCTAAGGCTAGACCGCTAGATTGGATGGATTCATGGAGGATTCGAGGGGATGGCTGGATCTTTAGCTTCTTGTTATCGTCTCATCCACGATCCACCCAGCCCTATGCTCCTATCCCATGCGATCTGAAAATCTCGAGCCGAGTGATCGATTTTGTCCGTCTTCGTCTATAGTCCCCGGATGCACCCCAATTACGGGGTAAGGAGAGACAGGGAGTTGATGTGGAAATTTCATAGGGGATAATTTTCTATTATTGTAATTGTTCTAACTTCGTCTCTCTAAGCACTGCATCTAGCCTGCCTGCCAAGGGTGGAACTAGTATGATTACATTACCCTAGTGATGTTCTTTTGGGAGATATTGCTGCTGTTATATTGTTTGTCCATTACCATTTCTATGATAATCACCGATCAAGGGC GGATCCAGAAACAAAAAGTTGGGGGGACTCAAATACTGAGTACACCGATATAAACACATAA TCTCAGTATTAAACTATGCTAAAATGCTATTATGAGACCTTTAGCACCTCCTACCTTATCAACTATATTCCCCTGCACCCAC GTTGGATCCGCCCCTGCCTCTGATGAATACTGTGTTATGGTTGAACAATCAGGAAGGGTTGGGGAATATAGTTCTAGGCAAAATTTGTAGTTGGATCAATCATTTATTCTCAGTTTTGGTTATATTATACTGATGAGTGTGTAGTCGAGAGGTAGGTCCAAAGATGAGCATCTTTAAAGGAGAAAATTGCATCTCAGTGTCTGTACTGCAAGTTTTTGGTTGGTGCCTATTAGTACCACATTTTTTCCCCTTTGGGAAAATATCACACTGCTCATATCTTCCATCTGAACTATTTATGTTAA] [+] EMBL CA766154 [ AGATCGATGCGCAGCGGCGGAACGCGGAGAAGAACC GAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGCCTCAAGGTCATCTGCCCCATCTGCAAGGTGACGAATGAATCCGTCTCCTCTTCCCTTCCTGCTTGCTAATCCAACCAGNAGCTTGTAGCCTGCCGTATTCGGTATTCCCTCCCCAGCCCTAAGGCTAGACCGCTAGATTGGATGGATTCATGGAGGATTCGAGGGGATGGCTGGATCTTTAGCTTCTTGTTATCGTCTCATCCACGATCCACCCGGCCCTATGCTCCTATCCCATGCGATCTGAAAATCTCGAGCCGAGTGATCGATTTTGTCCGTCTTCGTCTATAGTCCCCGGATGCACCTCAATTACAGGGTAAGGAGAGACAGGGAGTTGATGTGGAAATTTCATAGGGGATAATTTTCTATTATTGNAATTGNTCTAACTTCGTCTCTCTGAGCACTGCATCTAGCCTGCCTGCCAAGGGTGGAACTAGTATGATTACATTACCCTAGTGATGTTCTTTTGGGAGATATTGCTGCTGGTATATTGTTNGTCCATTACCATTNCTATGATAATCACCGATCAAGGGCGGGATCCAGAAACAAAAAGNTGGGGGGACTCAAATACTGAGTACACCGATATAAACACATAATTCTCAGTATTAAACTATGCTNAAATGCTATTATGAGACCTTTAGCACCTNCTATCTTATNAACTATATTCCCCTGCANCCNCGGTGGGATCCGNCCCTGGCTCTGAg ] consensusID : consensus_10208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 582 fasta sequence [TTTGGAGCTCTCGGGTCGGGATCGATCGATTGATCGGAGAGGAAGGGGAAGAACTCCGGAGGGGGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCA-CGGCGGA-ACGCGGAGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGCCTCAAGGTCATCTGCCCCATCTGCAAGGTTCAACTGGCCAATG-AGAAACAATTGATTGATCACTATGGATCAAAGCATCCCAAGGAAAAACCCCCTAGCCCATCAGAATAATTTGTGTTGGCCCTGATGCAGAAACATAAGT-TCTGCTTGCTCTGT-CCGCGAGATTGTTCGATCTGCCCCATACTTGGACCTCAACTGAAGTTTTACTCTACAATGTATGCATTTCCTCTTGTTTCTGGCTAGAGCCGTCATAAGCTTGTGCTTTCTATGAGAAGTATATCTTTTGATATCATAATGCCGAATCCCGAATGTATATCCCAACTGCATGTGGTACATTATCGGATAAGAGGGTGTTGAATTGTCAATAAAGCTTATGAAAAGTTTGACAAAAAAAAAAAAAAAA] [+] EMBL CF310525 [TTTGGAGCTCTCGGGTCGGGATCGATCGATTGATCGGAGAGGAAGGGGAAGAACTCCGGAGGGGGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCAGCGGCGGA ACGCGGAGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGCCTCAAGGTCATCTGCCCCATCTGCAAGGTTCAACTGGCCAATG AGAAACAATTGATTGATCACTATGGATCAAAGCATCCCAAGGAAAAATTCCCTAGCCCATCAGAATAATTTGTGTTGGCCCTGATGCAGAAACATAAGT TCTGCTTGCTCTGT CCGCGAGATTGTTCGATCTGCCCCATACTTGGACCTCAACTGAAGTTTTACTCTACAATGTATGCATTTCCTCTTGTTTCTGGCTAGAGCCGTCATAAGCTTGTGCTTTCTATGAGAAGTATATCTTTTGATATCATAATGCCGAATCCCGAATGTATATCCCAACTGCATGTGGTACATTATCGGATAAGAGGGTGTTGAATTGTCAATAAAGCTTATGA ] [+] EMBL C29007 [ GGTCGGGATCGATCGATTGATCGGAGAGGAAGGGGAAGAACTCCGGAGGGNGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCA GGCGGANACG GATGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCG CGTC GCCTCAAGGTCATCTGCCCCATCTGCAAGGTTCAACTTGCCAATGAAGANACAATTGATTGATCACTATGGATCAAAGCATCCCAAGGAAAAACCCCCTAGCCCATCAGAATAATTTGTGTTTGGCCTTATGCAGAAACATAAGTCTNTGCTTTCTCTGTNCCGCGAGAT ] [+] EMBL C98039 [ cntccgGAGNAAGGGGAAGAACTCCGGAGGGGGAGNAGGAGGAGGANCCCCGNTGACNCGGGGGAANCAGAAGATCGATGCNCACCGGCGGA ACNCGGAGAAGACCCAGAANTCGAAGGGGTCCCAGCTCGAGNCCCGCGCCGTCGGCCTCAAGGTCATNTNCCCCATCTGCANGGTTCAANTGNCCANTG NGAANCAATTGATTGATCACTNTGGATCAAAGCATCCCANGGAAAAACCCCCTAGCCCATCAGAATAATTTGTGTTGNCCCTGATGCAGAAACATAAGT TCTGCTTGCTCTGT CCGCGAGATTGTTCGATCTGCCCCATACTTGGACCTCAACTGAAGTTTTACTCTACAATGTATGCATTTCCTCTTGTTTCTGGCTAGAGCCGTCATAAGCTTGTGCTTTCTATGAGAAGTATATCTTTTGATATCATAATGCCGAATCCCGAATGTATATCCCAACTGCATGTGGTACATTATCGGATAAGAGGGTGTTGAATTGTCAATAAAGCTTATGAAAAGTTTGACAAAAAAAAAAAAAAAA] [+] EMBL C98038 [ AAGAACTCCGGA GGGGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCA CGGCGGA ACGCGGAGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGCCTCAAGGTCATCTGCCCCATCTGCAAGGTTCAACTGGCCAATG AGAAACAATTGATTGATCACTATGGATCAAAGCATCCCAAGGAAAAACCCCCTAGCCCATCAGAATAATTTGTGTTGGCCCTGATGCAGAAACATAAGT TCTGCTTGCTCTGT CCGCGAGATTGTTCGATCTGCCCCATACTTGGACCTCAACTGAAGTTTTACTCTACAATGTATGCATTTCCTCTTGTTTCTGGCTAGAGCCGTCATAAGCTTGTGCTTTCTATGAGAAGTATATCTTTTGATATCATAATGCCGAATCCCGAATGTATATCCCAACTGCATGTGGTACATTATCGGATAAGANGGTGTTGAATTGTCAATAAAGCTTATGAAAAGTTTGACAA ] [+] EMBL AU172377 [ CCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGCCTCAAGGTCATCTGCCCCATCTGCAAGGTTCAACTGGCCAATG AGAAACAATTGATTGATCACTATGGATCAAAGCATCCCAAGGAAAAACCCCCTAGCCCATCAGAATAATTTGTGTTGGCCCTGATGCAGAAACATAAGT TCTGCTTGCTCTGT CCGCGAGATTGTTCGATCTGCCCCATACTTGGACCTCAACTGAAGTTTTACTCTACAATGTATGCATTTCCTCTTGTTTCTGGCTAGAGCCGTCATAAGCTTGTGCTTTCTATGAGAAGTATATCTTTTGATATCATAATGCCGAATCCCGAATGTATATCCCAACTGCATGTGGTACATTATCGGATAAGAGGGTGTTGAATTGTCAATAAAGCTTATGAAAAGTTTGACAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10208#0 TTTGGAGCTCTCGGGTCGGGATCGATCGATTGATCGGAGAGGAAGGGGAAGAACTCCGGA 60 consensus_10208#1 TTTGGAGCTCTCGGGTCGGGATCGATCGATTGATCGGAGAGGAAGGGGAAGAACTCCGGA 60 ************************************************************ consensus_10208#0 GGGGGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCAGCGG 120 consensus_10208#1 GGGGGAGGAGGAGGAGGAGCACCGATGACGCGGGGGAAGCAGAAGATCGATGCGCA-CGG 119 ******************************************************** *** consensus_10208#0 CGGAACGCGGAGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGC 180 consensus_10208#1 CGGAACGCGGAGAAGAACCAGAAGTCGAAGGGGTCCCAGCTCGAGGCCCGCGCCGTCGGC 179 ************************************************************ consensus_10208#0 CTCAAGGTCATCTGCCCCATCTGCAAGGT--GACGAATGAATCCGTCTCCTCT--TCCCT 236 consensus_10208#1 CTCAAGGTCATCTGCCCCATCTGCAAGGTTCAACTGGCCAATGAGAAACAATTGATTGAT 239 ***************************** ** *** * * * * * consensus_10208#0 TCCTGCTTGCTAATCCAACC-AGTAGCTTGTAGCCTGCCGTATTCGGTATTCCCTCCCCA 295 consensus_10208#1 CACTATGGATCAAAGCATCCCAAGGAAAAACCCCCTAGCCCATCAGAATAATTTGTGTTG 299 ** ** ** ** * *** * ** * consensus_10208#0 GCCCTAAGGCTAGACCGCTAGATTGGATGGATTCATGGAGGATTCGAGGGGATGGCTGGA 355 consensus_10208#1 GCCCTGATGCAGAAACATAAGTTCTGCTTGCTCTGT--------CCGCGAGATTGTTCGA 351 ***** * ** * * ** * * * * * * * * *** * * ** consensus_10208#0 TCTTTAGCTTCTTGTTATCGTCTCATCC-ACGATCCACCCAGCCCTATGCTCCTATCCCA 414 consensus_10208#1 TCT---GCCCCATACTTGGACCTCAACTGAAGTTTTACTCTACAATGTATGCATTTCCTC 408 *** ** * * * **** * * * * ** * * * * * * *** consensus_10208#0 TGCGATCTGAAAATCTCGAGCCGAGTGATCGATTTTGTCCGTCTTCGTCTATAGTCCCCG 474 consensus_10208#1 TTGTTTCTGG----CTAGAGCCG--TCAT-AAGCTTGTGC-TTTCTATGAGAAGT----- 455 * **** ** ****** * ** * **** * * * * *** consensus_10208#0 GATGCACCCCAATTACGGGGTAAGGAGAGACAGGGAGTTGATGTGGAAATTTCATAGGGG 534 consensus_10208#1 -ATATCTTTTGATATCA---TAATGCCGAATCCCGAATGTATATCCCAACTGCATGTGGT 511 ** ** * *** * * ** * ** * ** * *** ** consensus_10208#0 ATAATTTTCTATTATTGTAATTGTTCTAACTTCGTCTCTCTAAGCACTGCATCTAGCCTG 594 consensus_10208#1 ACATTATCGGATAA----GAGGGTGTTGAATT-GTC------AATAAAGCTTATGAAAAG 560 * * * * ** * * ** * * ** *** * * ** * * * consensus_10208#0 CCTGCCAAGGGTGGAACTAGTATGATTACATTACCCTAGTGATGTTCTTTTGGGAGATAT 654 consensus_10208#1 TTTGACAAAAAAAAAAAAAAAA-------------------------------------- 582 ** *** ** * * consensus_10208#0 TGCTGCTGTTATATTGTTTGTCCATTACCATTTCTATGATAATCACCGATCAAGGGCGGA 714 consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 TCCAGAAACAAAAAGTTGGGGGGACTCAAATACTGAGTACACCGATATAAACACATAATC 774 consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 TCAGTATTAAACTATGCTAAAATGCTATTATGAGACCTTTAGCACCTCCTACCTTATCAA 834 consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 CTATATTCCCCTGCACCCACGTTGGATCCGCCCCTGCCTCTGATGAATACTGTGTTATGG 894 consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 TTGAACAATCAGGAAGGGTTGGGGAATATAGTTCTAGGCAAAATTTGTAGTTGGATCAAT 954 consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 CATTTATTCTCAGTTTTGGTTATATTATACTGATGAGTGTGTAGTCGAGAGGTAGGTCCA 1014 consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 AAGATGAGCATCTTTAAAGGAGAAAATTGCATCTCAGTGTCTGTACTGCAAGTTTTTGGT 1074 consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 TGGTGCCTATTAGTACCACATTTTTTCCCCTTTGGGAAAATATCACACTGCTCATATCTT 1134 consensus_10208#1 ------------------------------------------------------------ consensus_10208#0 CCATCTGAACTATTTATGTTAA 1156 consensus_10208#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||