These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 612 fasta sequence [TTCCTCCCCCGTCCACCGCTGCTCGCGAATCACCACAGATCGCCGCGGCGGAGACGAAGAGCGGCGGCGCAGAGGCTCTCAGATCCGGCGAGATGGCGGCGAAGGCGATCTCGAGCCCCGTGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCACCGCCTCTTTCTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATCGCATCTGTTTTTCTGGGGTTTGGATCTCTTTTCGTGCTTCTTGCAAGT-GGTGTTTATGTCTGATCGCCTGGGGCCATGCAGAAAGCATTTTGTTGTGTTATCTATTCCATAGTGAAAGTTCATCTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTCCTACTTCTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAATTGACGAGAGGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCTACAGTGCACCGAAAGATTGCGGTCTTTGCTGTGACACACCCGAAGATTGTGTATTTGCTCGTGGACACCTAAAAAATATGGTAAT] [+] EMBL C74679 [TTCCTCCCCCGTCCACCGCTGCTCGCGAATCACCACAGATCGCCGCGGCGGAGACGAAGAGCGGCGGCGCAGAGGCTCTCAGATCCGGCGANATGGCGGCGAAGGCGATCTCGAGCCCCGTGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGNCCCCGTCGGCCTCATGTTCACCGCCTCTTTCTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATCGCATCTGTTTTTCTGGGGTTTGGATCTCTTTTCGTGCTTCTTGCAAGTGGGTGTTTATGTCTGATCGCCTGGGGCCATGCAGAAAGCATTTTGTTGTGTTA NNAATCCATA ] [+] EMBL CF316016 [ TCCACCGCTGCTCGCGAATCACC CAGATCGCCGCGGCGGAGACGAAGAGCGGCGGCGCAGAGGCTCTCAGATCCGGCGAGATGGCGGCGAAGGCGATCTCGAGCCCCGTGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCACCGCCTCTTTCTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATCGCATCTGTTTTTCTGGGGTTTGGATCTCTTTTCGTGCTTCTTGCAAGT GGTGTTTATGTCTGATCGCCTGGGGCCATGCAGAAAGCATTTTGTTGTGTTATCTATTCCATAGTGAAAGTTCATCTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTCCTACTTCTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAATTGACGAGAGGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCTAC ] [+] EMBL CF321032 [ TCCACCGCTGCTCGCGAATCACCACAGATCGCCGCGGCGGAGACGAAGAGCGGCGGCGCAGAGGCTCTCAGATCCGGCGAGATGGCGGCGAAGGCGATCTCGAGCCCCGTGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCACCGCCTCTTTCTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATCGCATCTGTTTTTCTGGGGTTTGGATCTCTTTTCGTGCTTCTTGCAAGT GGTGTTTATGTCTGATCGCCTGGGGCCATGCAGAAAGCATTTTGTTGTGTTATCTATTCCATAGTGAAAGTTCATCTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTCCTACTTCTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAATTGACGAGAGGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCT ] [+] EMBL AK121337 [ CTGCTCGCGAATCACCACAGATCGCCGCGGCGGAGACGAAGAGCGGCGGCGCAGAGGCTCTCAGATCCGGCGAGATGGCGGCGAAGGCGATCTCGAGCCCCGTGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCACCGCCTCTTTCTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATCGCATCTGTTTTTCTGGGGTTTGGATCTCTTTTCGTGCTTCTTGCAAGT GGTGTTTATGTCTGATCGCCTGGGGCCATGCAGAAAGCATTTTGTTGTGTTATCTATTCCATAGTGAAAGTTCATCTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTCCTACTTCTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAATTGACGAGAGGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCTACAGTGCACCGAAAGATTGCGGTCTTTGCTGTGACACACCCGAAGATTGTGTATTTGCTCGTGGACACCTAAAAAATATGGTAAT] consensusID : consensus_10211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 539 fasta sequence [CGCGGCGGAGACGAAGGCGACGACGAGCCGACCGAGGAGGACGCGGCGCAGGCTCGGATCCGGCGAGAT-GC-GCGAAGGTGATCTCGAGCCCCGTGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCACCGCCTCTTTTTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATCGCATCTGTTTTTTTGGGGTTTGGATCTCTTTTCGTGCTTCTTGCAAGTGGTGTTTATGTCTGATCG-CCTGGG-GCCATGCAGAAAGCATTTTGTTGTGTTATCTATTCCATAGTGAAAGTTCATTTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTCCTACTTTTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAA-TTGACGAGAGGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCTACAGTGCCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI803030 [CGCGGCGGAGACGAAGGCGACGACGAGCCGACCGAGGAGGACGCGGCGCAGGCTCGGATCCGGCGAGAT GC GCGAAGGTGATCTCGAGCCCCGTGCCGGTGGATTGGTACCCAACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCACCGCCTCTTTCTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCTACAGCAACCATCGCGTCTGTTTTTCTGGGCTTTGGATCTCTTTTCGTGCTCCTTGCAAGTGGTGTTTATGTCTGATCGCCCTGGGCCCCATGCAGAAAGCATTTTGTTGTGTTATCTATTCCATAGTGAAAGTTCATCTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTCCTATTTCTTAGGTAATAT CCTTATCGACATGGATATGCTTTAGATAAAAACCCCACCAGAGGTG TTAAGACTaaaaaaaa ] [-] EMBL CF321033 [ GAGATGGCGGCGAAGGCGATCTCGAGCCCCGTGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCACCGCCTCTTTTTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATCGCATCTGTTTTTTTGGGGTTTGGATCTCTTTTCGTGCTTCTTGCAAGTGGTGTTTATGTCTGATCG CCTGGG GCCATGCAGAAAGCATTTTGTTGTGTTATCTATTCCATAGTGAAAGTTCATTTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTCCTACTTTTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAA TTGACGAGAGGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCTACAGTGCCCCGAAAAAAAAAAAAAAAAA ] [-] EMBL CF316017 [ TGGACTGGTACCCGACGCTGGCCGTTGTCATGGTTGCCGTCGGCCTCATGTTCACCGCCTCTTTTTTTATTTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGGAGATTGCCACAGCAACCATTGCATTTGTTTTTTTGGGGTTTGGATCTCTTTTCGTGCTTTTTGCAAGTGGTGTTTATGTTTGATCG CCTGGG GCCATGCAAAAAGCATTTTGTTGTGTTATCTATTCCAAAGTGAAAGTTCATTTAGGATATGTAAGGTCCTGAAATTACGGGCATGTTCCTACTTTTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAA TTGACGAAAGGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGGTACAGTGCCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10211#0 TTCCTCCCCCGTCCACCGCTGCTCGCGAATCACCACAGATCGCCGCGGCGGAGACGAAGA 60 consensus_10211#1 -----------------------CGCGGCGGAGACGAAGGCGACGACGAGCCGACCGAGG 37 **** * * ** ** * * *** ** consensus_10211#0 GCGGCGGCGCAGAGGCTCTCAGATCCGGCGAGATGGCGGCGAAGGCGATCTCGAGCCCCG 120 consensus_10211#1 AGGACGCGGCGCAGGCTC--GGATCCGGCGAGATG--CGCGAAGGTGATCTCGAGCCCCG 93 * ** ** ****** ************** ******* ************** consensus_10211#0 TGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCA 180 consensus_10211#1 TGCCGGTGGACTGGTACCCGACGCTGGCCGTCGTCATGGTCGCCGTCGGCCTCATGTTCA 153 ************************************************************ consensus_10211#0 CCGCCTCTTTCTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGG 240 consensus_10211#1 CCGCCTCTTTTTTCATCTATGAAGCGACTTCATCCAGGCGTAACCGTAGCTTAGCAAAGG 213 ********** ************************************************* consensus_10211#0 AGATTGCCACAGCAACCATCGCATCTGTTTTTCTGGGGTTTGGATCTCTTTTCGTGCTTC 300 consensus_10211#1 AGATTGCCACAGCAACCATCGCATCTGTTTTTTTGGGGTTTGGATCTCTTTTCGTGCTTC 273 ******************************** *************************** consensus_10211#0 TTGCAAGTGGTGTTTATGTCTGATCGCCTGGGGCCATGCAGAAAGCATTTTGTTGTGTTA 360 consensus_10211#1 TTGCAAGTGGTGTTTATGTCTGATCGCCTGGGGCCATGCAGAAAGCATTTTGTTGTGTTA 333 ************************************************************ consensus_10211#0 TCTATTCCATAGTGAAAGTTCATCTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTC 420 consensus_10211#1 TCTATTCCATAGTGAAAGTTCATTTAGGATATGTAAGGTCCTGAAATTACGTGCATGTTC 393 *********************** ************************************ consensus_10211#0 CTACTTCTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAATTGACGAGA 480 consensus_10211#1 CTACTTTTTAGGTAATATGCCTTATCGACATGGGTATGCTTTAGATAAAAATTGACGAGA 453 ****** ***************************************************** consensus_10211#0 GGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCTACAGTGCACCGAA 540 consensus_10211#1 GGTGTTTAAGACTTATTTTTGTGCCATTATATTAGGCAAAATTTGCTACAGTGCCCCGAA 513 ****************************************************** ***** consensus_10211#0 AGATTGCGGTCTTTGCTGTGACACACCCGAAGATTGTGTATTTGCTCGTGGACACCTAAA 600 consensus_10211#1 AAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------- 539 * * * * * consensus_10211#0 AAATATGGTAAT 612 consensus_10211#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||