These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1354 fasta sequence [GGTGAACGGGATCGGGGCGCTGTGCTCGTTCGGCGTCGCCGCCGCCGCCACCGTCTGCGTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCACCGGCAGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACAAGGTTAATTTGGTGACTCATTTCCAGTCCTATGTTTCTACTTTCTACCAAATCCATCATCAATCATTTTCTTTTGTCTATGGAAGATTACTTTTTTTTCTCATATAATTTAGTAGAATCATCCAAAATGGCGATCACTCATCCTTACTTTCGAAGTCACCGTGACTTTGTCACTGATATGTGACGTGACTTTGAAGGTAGAACATCCTAAACATCCTAATCCTTCTATAACTATGCGATTAGTAGCCAGATTTTACAAAACCGATGAAAACCGATCTTCTCGGACCAGCTCAAGAATACAAACCGTTTAGCTTGTTGGTCAAGTTAGAAAATATTCAAACTATAATTTTAATTTTTGATAAAATTTTATCGGTAGTCAATGGTTTTCAAACAATTTTCGTCAAAACCAAGAAAAAACATTGATTTCTTGGTTTTTGGCTCTGGATTGGTTTGGTGAATCTTGCTAGTAGCTTACTTGTGCTGTTGTGCATATGTATACCTAAATTAATTAATTAATTCAGATGCAGCTTGAGCCTTTCTAATATGAAGTTTCTACTAGAAGCACAAGAAGAAATCTTAATGATTTTGGCACGATGTTATTATGGGCTGATACAAATACAGAATCTAAAACCATCATATCGTTTACGTTCTAGTAAAAGAAAATTGGTTACTGACACCATGTTTTTTCATTCAATGTACAACTGAACAAAATTAGCTACTCAATCTTATCCATGAGAACTTTGCCTGAATCATGGTTTGATTTGTTGATCTGCAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGGTCAAGTACAATTAAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAAGGGGTTCATTAATGATGGAGAAGCTACTTTACTGAAAAAAAAGA] [+] EMBL CB657735 [GGTGAACGGGATCGGGGCGCTGTGCTCGTTCGGCGTCGCCGCCGCCGCCACCGTCTGCGTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCACCGGCAGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACAAGGTTAATTTGGTGACTCATTTCCAGTCCTATGTTTCTACTTTCTACCAAATCCATCATCAATCATTTTCTTTTGTCTATGGAAGATTACTTTTTTTTCTCATATAATTTAGTAGAATCATCCAAAATGGCGATCACTCATCCTTACTTTCGAAGTCACCGTGACTTTGTCACTGATATGTGACGTGACTTTGAAGGTAGAACATCCTAAACATCCTAATCCTTCTATAACTATGCGATTAGTAGCCAGATTTTACAAAACCGATGAAAACCGATCTTCTCGGACCAGCTCAAGAATACAAACCGTTTAGCTTGTTGGTCAAGTTAGAAAATATTCAAACTATAATTTTAATTTTTGATAAAATTTTATCGGTAGTCAATGGTTTTCAAACAATTTTCGTCAAAACCAAGAAAAAACATTGATTTCTTGGTTTTTGGCTCTGGATTGGTTTGGTGAATCTTGCTAGTAGCTTACTTGTGCTGTTGTGCATATGTATACCTAAATTAATTAATTAATTCAGATGCAGCTTGAGCCTTTCTAATATGAAGTTTCTACTAGAAGCACAAGAAGAAATCTTAATGATTTTGGCACGATGTTATTATGGGCTGATACAAATACAGAATCTAAAACCATCATATCGTTTACGTTCTAGTAAAAGAAAATTGGTTACTGACA ] [-] EMBL CB657736 [ TGATTTCTTGGTTTTTGGCTCTGGATTGGTTTGGTGAATCTTGCTAGTAGCTTACTTGTGCTGTTGTGCATATGTATACCTAAATTAATTAATTAATTCAGATGCAGCTTGAGCCTTTCTAATATGAAGTTTCTACTAGAAGCACAAGAAGAAATCTTAATGATTTTGGCACGATGTTATTATGGGCTGATACAAATACAGAATCTAAAACCATCATATCGTTTACGTTCTAGTAAAAGAAAATTGGTTACTGACACCATGTTTTTTCATTCAATGTACAACTGAACAAAATTAGCTACTCAATCTTATCCATGAGAACTTTGCCTGAATCATGGTTTGATTTGTTGATCTGCAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGGTCAAGTACAATTAAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAAGGGGTTCATTAATGATGGAGAAGCTACTTTACTGAAAAAAAAGA] consensusID : consensus_10214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 758 fasta sequence [TGCCAACGTGGTCGACGGCGACGACGACGGCGGCGGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGAAGGCGGGGGCGGAGTGCGTGGTGTTCAGGGTGGGGAAGCTGCGGGTGAACGGGATCGGGGCGCTGTGCTCGTTCGGCGTCGCCGCCGCCGCCACCGTCTGCGTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCACCGGC-AGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACAAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGGTCAAGTACAATTAAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAATAGGTTCATTAATGATGGAGAAGCTACTTTACTGAAAAAAAGTTGTTTTTGATTGGTGAACTGGTAACATAACTGAACCAGTTGGTGGTTTTCNNNNNNNNNN] [+] EMBL CB630565 [TGCCAACGTGGTCGACGGCGACGACGACGGCGGCGGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGAAGGCGGGGGCGGAGTGCGTGGTGTTCAGGGTGGGGAAGCTGCGGGTGAACGGGATCGGGGCGCTGTGCTCGTTCGGCGTCGCCGCCGCCGCCACCGTCTGCGTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCATCGGC AGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACAAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGAGGGGGTGGCTCTACTACGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCTACCAATTAATTATTACAATGTGTATGATCAAGTACAATTAAAGTTGCCATTGTATCAAGTATCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCA ] [-] EMBL CB630566 [ AGGGGAAGAAGGCGGGGGCGGAGTGCGTGGTGTTCAGGGTGGGGAAGCTGCGGGTGAACGGGATCGGGGCGCTGTGCTCGTTCGGCGTCGCCGCCGCCGCCACCGTCTGCGTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCATCGGC AGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACAAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGATCAAGTACAATTAAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAATAGGTT ] [+] EMBL AU055920 [ GTGGTGTTCAGGGTGGGGAAGCTGCGGGTGAACGGGATCGGGGCGCTGTGCTCGTTCGGCGTCG CGCCGCCGCCACCGTCTGCGTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCACCGGC AGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACAAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGGTCAAGTACAATTAAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAATAGGTTCATTAATGATGGAGAAGCTACTTTACTGAAAAAA ] [+] EMBL CA754694 [ TGTGCTCGTTCGGCGTCGCCGCCGCCGCCACCGTCTGCGTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCACCGGC AGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACNAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGGTCAAGTACAATTAAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATCGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGCTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAATAGGTTCATTAATGATGGAGAAGCTACTGTACTGAAGATGAGTTGTTTTTGATTGGTGAACTGGTAACATAACTGAACCAGTTGGTGGTTTTCNNNNNNNNNN] [+] EMBL AU095906 [ GTCTTCCTCGTCGGCGGCAGGCTGCAGCACCACCACCGGCAAGCAGCAGCAGCACAAGATCCAGCTTCAGCTCTATGGCGATGACAAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAGGCAATGTCATCTGTGATGGGNGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGCTACTATGAGGGCTTTTGATCAACCAATTAATTATTANAATGTGTATGGTCAAGTACAATTAAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGCCTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAATAATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAAGATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAATAGGTTCATTAATGATGGAGAAGCTACTTTACTGAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10214#0 GGTGAACGGGATCGGGGCGCTGTGCTCGTTCGGCGTCGCCGCCGCCGCCACCGTCTGCGT 60 consensus_10214#1 ------------------------------------------------------------ consensus_10214#0 CTTCCTCGTCGGCGGCAGGCTGCAGCACCACCACCGGCAGCAGCAGCAGCACAAGATCCA 120 consensus_10214#1 ------------------------------------------------------------ consensus_10214#0 GCTTCAGCTCTATGGCGATGACAAGGTTAATTTGGTGACTCATTTCCAGTCCTATGTTTC 180 consensus_10214#1 ------------------------------------------------------------ consensus_10214#0 TACTTTCTACCAAATCCATCATCAATCATTTTCTTTTGTCTATGGAAGATTACTTTTTTT 240 consensus_10214#1 ------------------------------------------------------------ consensus_10214#0 TCTCATATAATTTAGTAGAATCATCCAAAATGGCGATCACTCATCCTTACTTTCGAAGTC 300 consensus_10214#1 ------------------------------------------------------------ consensus_10214#0 ACCGTGACTTTGTCACTGATATGTGACGTGACTTTGAAGGTAGAACATCCTAAACATCCT 360 consensus_10214#1 ------------------------------------------------------------ consensus_10214#0 AATCCTTCTATAACTATGCGATTAGTAGCCAGATTTTACAAAACCGATGAAAACCGATCT 420 consensus_10214#1 ------------------------------------------------------------ consensus_10214#0 TCTCGGACCAGCTCAAGAATACAAACCGTTTAGCTTGTTGGTCAAGTTAGAAAATATTCA 480 consensus_10214#1 ------------------------------------------------------------ consensus_10214#0 AACTATAATTTTAATTTTTGATAAAATTTTATCGGTAGTCAATGGTTTTCAAACAATTTT 540 consensus_10214#1 ------------------------------------------------------------ consensus_10214#0 CGTCAAAACCAAGAAAAAACATTGATTTCTTGGTTTTTGGCTCTGGATTGGTTTGGTGAA 600 consensus_10214#1 ------------------------------------------------------------ consensus_10214#0 TCTTGCTAGTAGCTTACTTGTGCTGTTGTGCATATGTATACCTAAATTAATTAATTAATT 660 consensus_10214#1 --------------------------------------TGCC-AACGTGGTCGACGGCGA 21 * ** ** * * * consensus_10214#0 CAGATGCAGCTTGAGCCTTTCTAATATGAAGTTTCTACTAGAAGCACAAGAAGAAATCTT 720 consensus_10214#1 CGACGACGGCGGCGGCGAGGAGGAGGAGGAGG----AGGAGGAGGAGGAGGGGAAGAAGG 77 * * ** ** * * ** * ** ** * ** *** consensus_10214#0 AATGATTTTGGCACGATGTTATTATGGGCTGATACAAATACAGA-ATCTAAAACCATCAT 779 consensus_10214#1 CGGGGGCGGAGTGCG-TGGTGTT-CAGGGTGGGGAAGCTGCGGGTGAACGGGATCGGGGC 135 * * ** ** * ** ** ** * * * * * * consensus_10214#0 ATCGTTTACGTTCTAGTAAAAGAAAATTGGTTACTGACACCATGTTTTTTCATTCAATGT 839 consensus_10214#1 GCTGTGCTCGTTC-GGCGTCGCCGCCGCCGCCACCGTCTGCGT-CTTCCTCGTCGGCGGC 193 ** ***** * * ** * * * * ** ** * * consensus_10214#0 ACAACTGAACAAAATTAGCTACTCAATCTTATCCATGAGAACTTTGCCTGAATCATGGTT 899 consensus_10214#1 AGGCTGCAGCACCACCACCGGCAGCAGCAGCAGCACAAGATCCA-GCTTCAGCTCTA--- 249 * * ** * * * * * * ** *** * ** * * * consensus_10214#0 TGATTTGTTGATCTGCAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAG 959 consensus_10214#1 -----TGGCGATGACAAGAGAATGCAGCAGGTTGTGCAGCAGACATCAAGGCTGAACCAG 304 ** *** ******************************************** consensus_10214#0 GCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGC 1019 consensus_10214#1 GCAATGTCATCTGTGATGGGAGGGGGTGGCTCAACTAGGGCAAACATATCGTTTGGTGGC 364 ************************************************************ consensus_10214#0 TACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGGTCAAGTACAATT 1079 consensus_10214#1 TACTATGAGGGCTTTTGATCAACCAATTAATTATTACAATGTGTATGGTCAAGTACAATT 424 ************************************************************ consensus_10214#0 AAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGC 1139 consensus_10214#1 AAAGTTGCCATTGTAGCAAGTAGCAACTTAATTTGATATGGCACCCTACTCCCTAGTGGC 484 ************************************************************ consensus_10214#0 CTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAAT 1199 consensus_10214#1 CTTCATATATGCTGCAATCACCTTAGCTATGTGTTTACTACGTGTACACTAGATGTAAAT 544 ************************************************************ consensus_10214#0 AATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAA 1259 consensus_10214#1 AATTGGGTTCTTAGACCTTAGCACATATAGATGATGAGGATGGAATTATAGATTTATTAA 604 ************************************************************ consensus_10214#0 GATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAAGGGGTTCAT 1319 consensus_10214#1 GATGATAGTTAAGGAAAATAACAATTGTTTGACTTGTGCCTGAAGTCAAAATAGGTTCAT 664 *************************************************** ******* consensus_10214#0 TAATGATGGAGAAGCTACTTTACTGAAAAAAAAGA------------------------- 1354 consensus_10214#1 TAATGATGGAGAAGCTACTTTACTGAAAAAAAGTTGTTTTTGATTGGTGAACTGGTAACA 724 ******************************** consensus_10214#0 ---------------------------------- consensus_10214#1 TAACTGAACCAGTTGGTGGTTTTCNNNNNNNNNN 758 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||