These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1759 fasta sequence [TACAACATTTGAAAACATTTTTATTAAATAGTACAAGGTTTGCATGGGCCATATACCAAAACAGTATTTGTGAACCCATGGTCCTTGTTCTGAACCAAGACTTGGTTTCATGATGACACCAAACCGAAGAAAACAAACTGCGACCATATTTGTCCAAACTGAAGTTCTACCTCTGACTCTGAGTTCCATTGAATATTTGCCAATCCATCTTATTCAGCGCCTTAGCAAATTGTTCCTTTCATGTTTCAAGGCACGTAAAAACAAGTATGTACAACCAACAAAATTTGAAATCTGCTCAGGTTTCCAGATCTATGTAGCATACTAGTTCCTTCAAGAAGGTTCATAGTGTTAATTGTATGCCTGTTTGCAGTCTTGAGCAAGACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTGTGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAACATAACATGGGTGCTTTACACCACATGCATACGAAATACCAGATCTGTAATTCTGATGAATCTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTAACCGATCCCTTATCAACTATTTTTGGTGCCTTTGACTTGTGATCCTTGATGCTCCCTGCTGCTTGGAAAGGATTTCAGCTATAAGTTGCTTTTGGCCAAAGAGTTGGGCATTTCTCAAAAGCAAGTTCCTTGATGATGAGTCCACAGAATAGCCTTGACCAGTCATCCAGTCCAAGAGGCAAAGCAGTAGCTGCTTCTTATCAGGTTTCTGAATGTATCGCTGAATTGCTTTCCCAAAGATATCCTGGCTAATACGCCATCCTGAACGGTGTACTGCTTTCATAACATCGTTAATCAAATTTATGTTGCCTGATGCCATGAAAGATCTAGCAAAATTCCCCAGCGAGCGTCGAGATATGAACTCGGAATTGTCCTTAACAACTACGTATGCATCCTTGAGAAGTCCAGCTGGAACTAAGATACATAAAACCTTCTCATGAAGAGATTTACACACTGTTCTCTTTCCATATCTCAACATATTATACACAGAAAATGCTTCAGAAGGAAAACCCGCTTCTCCTAGCTGCATCATTATCTCAGAACAAAGCTCCTCATTCAATTGATGGCCCTTTGTATGCATATCTTGAATTGTCTTGTATGCTAGGTGATAGACCTTTGCCATGCAGAAGTACCTTATTAAGGTATTAAATGTGATAGCATCAGGCGATATGTTCGATTCATCCATTTTCCTAAGCATGATCATTACACTTTCCATATCATTGGTGCTGCAGTAAGCACGAAGTGATGTATTAAGCATAACCAGATCATATGTTGCATTCTTGGCCTCAAATTCTTTTGCAAGTTGTTTTGACTCTTCACGATAGCCACCTCGATGTAATGCTGATATCATGATACTGAATGCATAGCCATCTGCAGAAATAAGAAGATAAGCTCCTTAGGCAAGGACAACAAGACACAAATTCTGGGTAATAGCAGGCAGCAGCACTAGAAAATACTCCAGGGAAAAAAAATCAACATACTACTCCCACCAGTTTCATAAACAGGTTGTTTTATCATGCCAGTCAACACAAGTTAATTTTGAGCATAAAAATCATTAAAAAAATAAATGTTAGGTATATGAAAATAGCATAATCAAGTTTTTCAAAACTAGAGATTTCATTATATTTCACTTATGTAACTTCTTTTTTTAATTTATGCTA] [+] EMBL CB677984 [TACAACATTTGAAAACATTTTTATTAAATAGTACAAGGTTTGCATGGGCCATATACCAAAACAGTATTTGTGAACCCATGGTCCTTGTTCTGAACCAAGACTTGGTTTCATGATGACACCAAACCGAAGAAAACAAACTGCGACCATATTTGTCCAAACTGAAGTTCTACCTCTGACTCTGAGTTCCATTGAATATTTGCCAATCCATCTTATTCAGCGCCTTAGCAAATTGTTCCTTTCATGTTTCAAGGCACGTAAAAACAAGTATGTACAACCAACAAAATTTGAAATCTGCTCAGGTTTCCAGATCTATGTAGCATACTAGTTCCTTCAAGAAGGTTCATAGTGTTAATTGTATGCCTGTTTGCAGTCTTGAGCAAGACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTGTGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAACATAACATGGGTGCTTTACACCACATGCATACGAAATACCAGATCTGTAATTCTGATGAATCTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTAACCGATCCCTTATCAACTATTTTTGGTGCCTTTGACTTGTGATCCTTGATGCTCCCTGCTGCTTGGAAAGGATTTCAGCTATAAGTTGCTTTTGGCCAAAGAGTTGGGCATTTCTCAAAAGCAAGTTCCTTGATGATGAGTCCACAGAATAGCCTTGACCAGTCATCCAGTCCAAGAGGCAAAGCAGTAGCTGCTTCTTATCAGGTTT ] [+] EMBL CB677986 [TACAACATTTGAAAACATTTTTATTAAATAGTACAAGGTTTGCATGGGCCATATACCAAAACAGTATTTGTGAACCCATGGTCCTTGTTCTGAACCAAGACTTGGTTTCATGATGACACCAAACCGAAGAAAACAAACTGCGACCATATTTGTCCAAACTGAAGTTCTACCTCTGACTCTGAGTTCCATTGAATATTTGCCAATCCATCTTATTCAGCGCCTTAGCAAATTGTTCCTTTCATGTTTCAAGGCACGTAAAAACAAGTATGTACAACCAACAAAATTTGAAATCTGCTCAGGTTTCCAGATCTATGTAGCATACTAGTTCCTTCAAGAAGGTTCATAGTGTTAATTGTATGCCTGTTTGCAGTCTTGAGCAAGACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTGTGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAACATAACATGGGTGCTTTACACCACATGCATACGAAATACCAGATCTGTAATTCTGATGAATCTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTAACCGATCCCTTATCAACTATTTTTGGTGCCTTTGACTTGTGATCCTTGATGCTCCCTGCTGCTTGGAAAGGATTTCAGCTATAAGTTGCTTTTGGCCAAAGAGTTGGGCATTTCTCAAAAGCAAGTTCCTTG ] [+] EMBL CB662761 [ ACATTTTTATTAAATAGTAAAAGGTTTGCATGGGCCATATACCAAAACAGTATTTGTGAACCCATGGTCCTTGTTCTGAACCAAGACTTGGTTTCATGATGACACCAAACCGAAAAAAACAAACTGCGACCATATTTGTCCAAACTGAAGTTCTACCTCTGACTCTGAGTTCCATTGAATATTTGCCAATCCATCTTATTCAGCGCCTTAACAAATTGTTCCTTTCATGTTTCAAGGCACGTAAAAACAAGTATGTACAACCAACAAAATTTGAAATCTGCTCAGGTTTCCAAATCTATGTAGCATACTAGTTCCTTCAAGAAGGTTCATAGTGTTAATTGTATGCCTGTTTGCAGTCTTGAGCAAAACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTGTGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAACATAACATGGGTGCTTTACACCACATGCATACGAAATACCAAATCTGTAATTCTGATGAATCTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTAACCGATCCCTTATCAACTATTTTTGGTGCCTTTGACTTGTGATCCTTGATGCTCCCTGCTGCTTGGAAAGGATTTCAGCTATAAGTTGCTTTTGGCCAAAGAGTTGGGCATTTCTCAAAAGCAAGTTC ] [-] EMBL CB662760 [ CCTTGATGCTCCATGCTGCTTGGAAAGGATTTCAGCTATAAGTTGCTTTTGGCCAAAGAGTTGGGCATTTCTCAAAAGCAAGTTCCTTGATGATGAGTCCACAGAATAGCCTTGACCAGTCATCCAGTCCAAGAGGCAAAGCAGTAGCTGCTTCTTATCAGGTTTCTGAATGTATCGCTGAATTGCTTTCCCAAAGATATCCTGGCTAATACGCCATCCTGAACGGTGTACTGCTTTCATAACATCGTTAATCAAATTTATGTTGCCTGATGCCATGAAAGATCTAGCAAAATTCCCCAGCGAGCGTCGAGATATGAACTCGGAATTGTCCTTAACAACTACGTATGCATCCTTGAGAAGTCCAGCTGGAACTAAGATACATAAAACCTTCTCATGAAGAGATTTACACACTGTTCTCTTTCCATATCTCAACATATTATACACAGAAAATGCTTCAGAAGGAAAACCCGCTTCTCCTAGCTGCATCATTATCTCAGAACAAAGCTCCTCATTCAATTGATGGCCCTTTGTATGCATATCTTGAATTGTCTTGTATGCTAGGTGATAGACCTTTGCCATGCAGAAGTACCTTATTAAGGTATTAAATGTGATAGCATCAGGCGATATGTTCGATTCATCCATTTTCCTAAGCATGATCATTACACTTTCCATATCATTGGTGCTGCAGTAAGCACGAAGTGATGTATTAAGCATAACCAGATCATATGTTGCATTCTTGGCCTCAAATTCTTTTGCAAGTTGTTTTGACTCTTCACGATAGCCACCT ] [-] EMBL CB677985 [ GCTGGAACTAAGATACATAAAACCTTCTCATGAAGAGATTTACACACTGTTCTCTTTCCATATCTCAACATATTATACACAGAAAATGCTTCAGAAGGAAAACCCGCTTCTCCTAGCTGCATCATTATCTCAGAACAAAGCTCCTCATTCAATTGATGGCCCTTTGTATGCATATCTTGAATTGTCTTGTATGCTAGGTGATAGACCTTTGCCATGCAGAAGTACCTTATTAAGGTATTAAATGTGATAGCATCAGGCGATATGTTCGATTCATCCATTTTCCTAAGCATGATCATTACACTTTCCATATCATTGGTGCTGCAGTAAGCACGAAGTGATGTATTAAGCATAACCAGATCATATGTTGCATTCTTGGCCTCAAATTCTTTTGCAAGTTGTTTTGACTCTTCACGATAGCCACCTCGATGTAATGCTGATATCATGATACTGAATGCATAGCCATCTGCAGAAATAAGAAGATAAGCTCCTTAGGCAAGGACAACAAGACACAAATTCTGGGTAATAGCAGGCAGCAGCACTAGAAAATACTCCAGGGAAAAAAAATCAACATACTACTCCCACCAGTTTCATAAACAGGTTGTTTTATCATGCCAGTCAACACAAGTTAATTTTGAGCATAAAAATCATTAAAAAAATAAATGTTAGGTATATGAAAATAGCATAATCAAGTTTTTCAAAACTAGAGATTTCATTATATTTCACTTATGTAACTTCTTTTTTTAATTTATGCTA] [-] EMBL CB677983 [ ACCTTCTCATGAAGAGATTTACACACTGTTCTCTTTCCATATCTCAACATATTATACACAGAAAATGCTTCAGAAGGAAAACCCGCTTCTCCTAGCTGCATCATTATCTCAGAACAAAGCTCCTCATTCAATTGATGGCCCTTTGTATGCATATCTTGAATTGTCTTGTATGCTAGGTGATAGACCTTTGCCATGCAGAAGTACCTTATTAAGGTATTAAATGTGATAGCATCAGGCGATATGTTCGATTCATCCATTTTCCTAAGCATGATCATTACACTTTCCATATCATTGGTGCTGCAGTAAGCACGAAGTGATGTATTAAGCATAACCAGATCATATGTTGCATTCTTGGCCTCAAATTCTTTTGCAAGTTGTTTTGACTCTTCACGATAGCCACCTCGATGTAATGCTGATATCATGATACTGAATGCATAGCCATCTGCAGAAATAAGAAGATAAGCTCCTTAGGCAAGGACAACAAGACACAAATTCTGGGTAATAGCAGGCAGCAGCACTAGAAAATACTCCAGGGAAAAAAAATCAACATACTACTCCCACCAGTTTCATAAACAGGTTGTTTTATCATGCCAGTCAACACAAGTTAATTTTGAGCATAAAAATCATTAAAAAAATAAATGTTAGGTATATGAAAATAGCATAATCAAGTTTTTCAAAACTAGAGATTTCATTATATTTCACTTATGTAACTTCTTTTTTTAATTTAGGCTA] consensusID : consensus_10223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [TTTTAAATTGGAGGATCTGCTCAGGTTTCCAGATCTATGTAGCATACTAGTTCCTTCAAGAAGGTTCATAGNGTTAACTGACAAAACACCAAACTCAATATACACTTTCTCTGATGTTGCTGTAAAGAAATGCAAGGGAACTTACTTTTATGCCGGTTGGGAGTCTTGAGCAAGACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTGGTGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAACATAACATGGGTGCTTTACACCACATGCATACGAAATACCAGATCTGTAATTCTGATGAATCTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTAACCGATCCCTTATCAACTATTTTGGTGCCTTTGACTTGTGATCCTTGGATGCT] [-] EMBL BM420276 [TTTTAAATTGGAGGATCTGCTCAGGTTTCCAGATCTATGTAGCATACTAGTTCCTTCAAGAAGGTTCATAGNGTTAACTGACAAAACACCAAACTCAATATACACTTTCTCTGATGTTGCTGTAAAGAAATGCAAGGGAACTTACTTTTATGCCGGTTGGGAGTCTTGAGCAAGACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTGGTGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAACATAACATGGGTGCTTTACACCACATGCATACGAAATACCAGATCTGTAATTCTGATGAATCTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTAACCGATCCCTTATCAACTATTTTGGTGCCTTTGACTTGTGATCCTTGGATGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10223#0 TACAACATTTGAAAACATTTTTATTAAATAGTACAAGGTTTGCATGGGCCATATACCAAA 60 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 ACAGTATTTGTGAACCCATGGTCCTTGTTCTGAACCAAGACTTGGTTTCATGATGACACC 120 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 AAACCGAAGAAAACAAACTGCGACCATATTTGTCCAAACTGAAGTTCTACCTCTGACTCT 180 consensus_10223#1 --------------------------------------------------------TTTT 4 * * consensus_10223#0 GAGTTCCATTGAATATTTGCCAATCCATCTTATTCAGCGCCTTAGCAAATTGTTCCTTTC 240 consensus_10223#1 AAATTG----GAGGATCTGCTCAGGTTTCCAGATCTATG---TAGCATACTAGTTCCTTC 57 * ** ** ** *** * ** ** * ***** * * * * *** consensus_10223#0 ATGTTTCAAGGCACGTAAAAACAAGTATGTACAACCAACAAAATTTGAAATCTGCTCAGG 300 consensus_10223#1 AAG----AAGGTTCATAGNGTTAACTG---ACAAAACACCAAACTCAATATACACT---- 106 * * **** * ** ** * **** ** *** * * ** ** consensus_10223#0 TTTCCAGATCTATGTAGCATACTAGTTCCTTCAAGAAGGTTCATAGTGTTAATTGTATGC 360 consensus_10223#1 TTCTCTGATGT-TGCTGTAAAGAAA----TGCAAGGGAACTTAC--------TTTTATGC 153 ** * *** * ** * * * * * **** * * ** ***** consensus_10223#0 CTGTTTGCAGTCTTGAGCAAGACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTG- 419 consensus_10223#1 CGGTTGGGAGTCTTGAGCAAGACTTGCCTACCACTTACTAGTCCCATCTGCAGCTCTTGG 213 * *** * *************************************************** consensus_10223#0 TGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAAC 479 consensus_10223#1 TGGAATCTCACCCTGAATAGCCTGACTAAAATGGACAAGCTCAAGCTCAGGCATTACAAC 273 ************************************************************ consensus_10223#0 ATAACATGGGTGCTTTACACCACATGCATACGAAATACCAGATCTGTAATTCTGATGAAT 539 consensus_10223#1 ATAACATGGGTGCTTTACACCACATGCATACGAAATACCAGATCTGTAATTCTGATGAAT 333 ************************************************************ consensus_10223#0 CTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTA 599 consensus_10223#1 CTTGATTGGATCCTGGGACACATGAGGATGAGGGTGAATAACTTGTTACCTGATGATCTA 393 ************************************************************ consensus_10223#0 ACCGATCCCTTATCAACTATTTTTGGTGCCTTTGACTTGTGATCCTTG-ATGCTCCCTGC 658 consensus_10223#1 ACCGATCCCTTATCAACTATTTT-GGTGCCTTTGACTTGTGATCCTTGGATGCT------ 446 *********************** ************************ ***** consensus_10223#0 TGCTTGGAAAGGATTTCAGCTATAAGTTGCTTTTGGCCAAAGAGTTGGGCATTTCTCAAA 718 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 AGCAAGTTCCTTGATGATGAGTCCACAGAATAGCCTTGACCAGTCATCCAGTCCAAGAGG 778 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 CAAAGCAGTAGCTGCTTCTTATCAGGTTTCTGAATGTATCGCTGAATTGCTTTCCCAAAG 838 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 ATATCCTGGCTAATACGCCATCCTGAACGGTGTACTGCTTTCATAACATCGTTAATCAAA 898 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 TTTATGTTGCCTGATGCCATGAAAGATCTAGCAAAATTCCCCAGCGAGCGTCGAGATATG 958 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 AACTCGGAATTGTCCTTAACAACTACGTATGCATCCTTGAGAAGTCCAGCTGGAACTAAG 1018 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 ATACATAAAACCTTCTCATGAAGAGATTTACACACTGTTCTCTTTCCATATCTCAACATA 1078 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 TTATACACAGAAAATGCTTCAGAAGGAAAACCCGCTTCTCCTAGCTGCATCATTATCTCA 1138 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 GAACAAAGCTCCTCATTCAATTGATGGCCCTTTGTATGCATATCTTGAATTGTCTTGTAT 1198 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 GCTAGGTGATAGACCTTTGCCATGCAGAAGTACCTTATTAAGGTATTAAATGTGATAGCA 1258 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 TCAGGCGATATGTTCGATTCATCCATTTTCCTAAGCATGATCATTACACTTTCCATATCA 1318 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 TTGGTGCTGCAGTAAGCACGAAGTGATGTATTAAGCATAACCAGATCATATGTTGCATTC 1378 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 TTGGCCTCAAATTCTTTTGCAAGTTGTTTTGACTCTTCACGATAGCCACCTCGATGTAAT 1438 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 GCTGATATCATGATACTGAATGCATAGCCATCTGCAGAAATAAGAAGATAAGCTCCTTAG 1498 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 GCAAGGACAACAAGACACAAATTCTGGGTAATAGCAGGCAGCAGCACTAGAAAATACTCC 1558 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 AGGGAAAAAAAATCAACATACTACTCCCACCAGTTTCATAAACAGGTTGTTTTATCATGC 1618 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 CAGTCAACACAAGTTAATTTTGAGCATAAAAATCATTAAAAAAATAAATGTTAGGTATAT 1678 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 GAAAATAGCATAATCAAGTTTTTCAAAACTAGAGATTTCATTATATTTCACTTATGTAAC 1738 consensus_10223#1 ------------------------------------------------------------ consensus_10223#0 TTCTTTTTTTAATTTATGCTA 1759 consensus_10223#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||