These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 510 fasta sequence [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTT-CCCTGTCCCAGATTAGCTCTGTGTAGTTCCTC-AATACTTCGAGTTTTTTTGCAACAAACAATGTGTAGCTTGCCTGTGACTCTGAGTAACTTGCTTTGTTCTTCCTTACTAAATCTGCAGCTAGAGTCTCCTGGGATATTAGAAATCGGTATTTTATGGACTTATGGAACGGCGAAAATTACTGTTGTATATTGACCTCGTTTCTGATGAGTTACAGTGGCTGTACAGTGTGTGCGCGCGATTGCGTATGACCGAATGCTGTTTATCTGTTTTCTGAAAA] [+] EMBL CB000291 [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAAGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTT CCCTGTCCCAGATTAGCTCTGTGTAGTTCCTC AATACTTCGAGTTTTTTTGCAACAAACAATGTGTAGCTTGCCTGTGACTCTGAGTAACTTGCTTTGTTCTTCCTTACTAAATCTGCAGCTAGAGTCTCCTGGGATATTAGAAATCGGTATTTTATGGACTTATGGAACGGCGAAAATTACTGTTGTATATTGACCTCGTTTCTGATGAGTTACAGTGGCTGTACAGTGTGTGCGCGCGATTGCGTATGACCGAATGCTGTTTATCTGTTTTCTGAAAA] [+] EMBL BI806016 [TCTGGCGCCAAAGAGTCGTTTGCACAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAG CCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATC AAACGGAGAGCTGATTGTAAAGC CAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTTCCCCTGTCCCAGATCAGCTCTGTGTAGTTCCTCAAATACTTCGAGTTTTTTTGCAAAAAAaa ] [+] EMBL AK058978 [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTT CCCTGTCCCAGATTAGCTCTGTGTAGTTCCTC AATACTTCGA ] [+] EMBL AA751823 [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAATNTTAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCACCATACCAAATATCNTCNNNTGAACNNCCGGCTGTAATTTTCCNGTGTGCTCATTT CCCTGT ] [-] EMBL CB654225 [ CTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTT CCCTGTCCCAGATTAGCTCTGTGTAGTTCCTC AATACTTCGAGTTTTTTTGCAACAAACAATGTGTAGCTTGCCTGTGACTCTGAGTAACTTGCTTTGTTCTTCCTTACTAAATCTGCAGCTAGAGTCTCCTGGGATATTAGAAATCGGTATTTTATGGACTTATGGAACGGCGAAAATTACTGTTGTATATTGACCTCGTTTCTGATG ] [+] EMBL AF522015 [ AGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTT CCCTGTCCCAGATCAGCTCTGTGTAGTTCCTC AATACTTCGAG TTTTTTGCAACAAACAATGTGTAGCTTGCCTGTGACTGTGAGTAACTTGCTTTGTTCTTCCTTAaa ] consensusID : consensus_10225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGNAACAGAAGGAGAAGCAGACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGNCGGCTGTATTTTTCAGNGNGCTCATTTCCTTGTCCANATCAGCTNTGGGTAGTTCCTCATACTTCGAGTTTTTTTGCAACAAACAATGNGTAGCNTGNCTGGGACTGGGANAAACTTGCTTGGTCTTCCNTACTAAANCTGCAGCTTANAGTCNCCCTNGGAAATTTAAAAACNGGATTTTATGGACTTATGGNACGGNGAAAATTACTGGTGGTTTTTGACCNCGGTTNTTGA] [+] EMBL CA767420 [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGNAACAGAAGGAGAAGCAGACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGNCGGCTGTATTTTTCAGNGNGCTCATTTCCTTGTCCANATCAGCTNTGGGTAGTTCCTCATACTTCGAGTTTTTTTGCAACAAACAATGNGTAGCNTGNCTGGGACTGGGANAAACTTGCTTGGTCTTCCNTACTAAANCTGCAGCTTANAGTCNCCCTNGGAAATTTAAAAACNGGATTTTATGGACTTATGGNACGGNGAAAATTACTGGTGGTTTTTGACCNCGGTTNTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10225#0 TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCG 60 consensus_10225#1 TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCG 60 ************************************************************ consensus_10225#0 CCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAG 120 consensus_10225#1 CCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGNAACAGAAG 120 *************************************************** ******** consensus_10225#0 GAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATAC 180 consensus_10225#1 GAGAAGCAGA-CCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATAC 179 ********** ************************************************* consensus_10225#0 CAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTTCCCTGTCCCA 240 consensus_10225#1 CAGAGATCGTCAAGTGAACAGNCGGCTGTA-TTTTTCAGNGNGCTCATTTCCTTGTCC-A 237 ********************* ******** **** *** * ********** ***** * consensus_10225#0 GATTAGCTCTGTGTAGTTCCTCAATACTTCGAGTTTTTTTGCAACAAACAATGTGTAGCT 300 consensus_10225#1 NATCAGCTNTGGGTAGTTCCTCA-TACTTCGAGTTTTTTTGCAACAAACAATGNGTAGCN 296 ** **** ** *********** ***************************** ***** consensus_10225#0 TGCCTGTGACTCTGAGTAACTTGCTTTGTTCTTCCTTACTAAATCTGCAGCT-AGAGTCT 359 consensus_10225#1 TGNCTGGGACTGGGANAAACTTGCTTGGT-CTTCCNTACTAAANCTGCAGCTTANAGTCN 355 ** *** **** ** ********* ** ***** ******* ******** * **** consensus_10225#0 CC-TGGGATATTAGAAATCGGTATTTTATGGACTTATGGAACGGCGAAAATTACTGTTGT 418 consensus_10225#1 CCCTNGGAAATTTAAAAACNGGATTTTATGGACTTATGGNACGGNGAAAATTACTGGTGG 415 ** * *** *** *** * * ***************** **** *********** ** consensus_10225#0 ATATTGACCTCGTTTCTGATGAGTTACAGTGGCTGTACAGTGTGTGCGCGCGATTGCGTA 478 consensus_10225#1 TTTTTGACCNCGGTTNT--TGA-------------------------------------- 435 * ****** ** ** * *** consensus_10225#0 TGACCGAATGCTGTTTATCTGTTTTCTGAAAA 510 consensus_10225#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||