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Oryza sativa
cluster # 10225 cluster # 10225       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10225#0 length = 510 sequences # 6  
consensus_10225#1 length = 435 sequences # 1  

consensusID : consensus_10225#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 510
fasta sequence
                              [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTT-CCCTGTCCCAGATTAGCTCTGTGTAGTTCCTC-AATACTTCGAGTTTTTTTGCAACAAACAATGTGTAGCTTGCCTGTGACTCTGAGTAACTTGCTTTGTTCTTCCTTACTAAATCTGCAGCTAGAGTCTCCTGGGATATTAGAAATCGGTATTTTATGGACTTATGGAACGGCGAAAATTACTGTTGTATATTGACCTCGTTTCTGATGAGTTACAGTGGCTGTACAGTGTGTGCGCGCGATTGCGTATGACCGAATGCTGTTTATCTGTTTTCTGAAAA]

[+] EMBL CB000291             [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAAGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTT CCCTGTCCCAGATTAGCTCTGTGTAGTTCCTC AATACTTCGAGTTTTTTTGCAACAAACAATGTGTAGCTTGCCTGTGACTCTGAGTAACTTGCTTTGTTCTTCCTTACTAAATCTGCAGCTAGAGTCTCCTGGGATATTAGAAATCGGTATTTTATGGACTTATGGAACGGCGAAAATTACTGTTGTATATTGACCTCGTTTCTGATGAGTTACAGTGGCTGTACAGTGTGTGCGCGCGATTGCGTATGACCGAATGCTGTTTATCTGTTTTCTGAAAA]
[+] EMBL BI806016             [TCTGGCGCCAAAGAGTCGTTTGCACAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAG CCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATC AAACGGAGAGCTGATTGTAAAGC CAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTTCCCCTGTCCCAGATCAGCTCTGTGTAGTTCCTCAAATACTTCGAGTTTTTTTGCAAAAAAaa                                                                                                                                                                                                                            ]
[+] EMBL AK058978             [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTT CCCTGTCCCAGATTAGCTCTGTGTAGTTCCTC AATACTTCGA                                                                                                                                                                                                                                              ]
[+] EMBL AA751823             [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAATNTTAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCACCATACCAAATATCNTCNNNTGAACNNCCGGCTGTAATTTTCCNGTGTGCTCATTT CCCTGT                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB654225             [ CTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAGGAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTT CCCTGTCCCAGATTAGCTCTGTGTAGTTCCTC AATACTTCGAGTTTTTTTGCAACAAACAATGTGTAGCTTGCCTGTGACTCTGAGTAACTTGCTTTGTTCTTCCTTACTAAATCTGCAGCTAGAGTCTCCTGGGATATTAGAAATCGGTATTTTATGGACTTATGGAACGGCGAAAATTACTGTTGTATATTGACCTCGTTTCTGATG                                                                       ]
[+] EMBL AF522015             [                                                                                                                                                                                       AGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTT CCCTGTCCCAGATCAGCTCTGTGTAGTTCCTC AATACTTCGAG TTTTTTGCAACAAACAATGTGTAGCTTGCCTGTGACTGTGAGTAACTTGCTTTGTTCTTCCTTAaa                                                                                                                                                                          ]


>consensus_10225#0 TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCG CCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAG GAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATAC CAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTTCCCTGTCCCA GATTAGCTCTGTGTAGTTCCTCAATACTTCGAGTTTTTTTGCAACAAACAATGTGTAGCT TGCCTGTGACTCTGAGTAACTTGCTTTGTTCTTCCTTACTAAATCTGCAGCTAGAGTCTC CTGGGATATTAGAAATCGGTATTTTATGGACTTATGGAACGGCGAAAATTACTGTTGTAT ATTGACCTCGTTTCTGATGAGTTACAGTGGCTGTACAGTGTGTGCGCGCGATTGCGTATG ACCGAATGCTGTTTATCTGTTTTCTGAAAA



consensusID : consensus_10225#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence
                              [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGNAACAGAAGGAGAAGCAGACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGNCGGCTGTATTTTTCAGNGNGCTCATTTCCTTGTCCANATCAGCTNTGGGTAGTTCCTCATACTTCGAGTTTTTTTGCAACAAACAATGNGTAGCNTGNCTGGGACTGGGANAAACTTGCTTGGTCTTCCNTACTAAANCTGCAGCTTANAGTCNCCCTNGGAAATTTAAAAACNGGATTTTATGGACTTATGGNACGGNGAAAATTACTGGTGGTTTTTGACCNCGGTTNTTGA]

[+] EMBL CA767420             [TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCGCCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGNAACAGAAGGAGAAGCAGACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACCAGAGATCGTCAAGTGAACAGNCGGCTGTATTTTTCAGNGNGCTCATTTCCTTGTCCANATCAGCTNTGGGTAGTTCCTCATACTTCGAGTTTTTTTGCAACAAACAATGNGTAGCNTGNCTGGGACTGGGANAAACTTGCTTGGTCTTCCNTACTAAANCTGCAGCTTANAGTCNCCCTNGGAAATTTAAAAACNGGATTTTATGGACTTATGGNACGGNGAAAATTACTGGTGGTTTTTGACCNCGGTTNTTGA]


>consensus_10225#1 TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCG CCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGNAACAGAAG GAGAAGCAGACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATACC AGAGATCGTCAAGTGAACAGNCGGCTGTATTTTTCAGNGNGCTCATTTCCTTGTCCANAT CAGCTNTGGGTAGTTCCTCATACTTCGAGTTTTTTTGCAACAAACAATGNGTAGCNTGNC TGGGACTGGGANAAACTTGCTTGGTCTTCCNTACTAAANCTGCAGCTTANAGTCNCCCTN GGAAATTTAAAAACNGGATTTTATGGACTTATGGNACGGNGAAAATTACTGGTGGTTTTT GACCNCGGTTNTTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10225#0      TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCG 60
consensus_10225#1      TCTGGCGCCAAAGAGTCGTTTGCGCAGATTACAGGATCTGTCAGCGCAGAGGCAGAAGCG 60
                       ************************************************************

consensus_10225#0      CCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGAAACAGAAG 120
consensus_10225#1      CCAGTGGAGGAAGAGAAGCCCTGGGTGAAGAGGCGAAACGAGAGGAAGCGGNAACAGAAG 120
                       *************************************************** ********

consensus_10225#0      GAGAAGCAGAACCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATAC 180
consensus_10225#1      GAGAAGCAGA-CCAGAAGCAGGGGATCAAAACGGAGAGCTGATTGTAAAGCGCAGCATAC 179
                       ********** *************************************************

consensus_10225#0      CAGAGATCGTCAAGTGAACAGCCGGCTGTAATTTTCCAGTGTGCTCATTTCCCTGTCCCA 240
consensus_10225#1      CAGAGATCGTCAAGTGAACAGNCGGCTGTA-TTTTTCAGNGNGCTCATTTCCTTGTCC-A 237
                       ********************* ******** **** *** * ********** ***** *

consensus_10225#0      GATTAGCTCTGTGTAGTTCCTCAATACTTCGAGTTTTTTTGCAACAAACAATGTGTAGCT 300
consensus_10225#1      NATCAGCTNTGGGTAGTTCCTCA-TACTTCGAGTTTTTTTGCAACAAACAATGNGTAGCN 296
                        ** **** ** *********** ***************************** ***** 

consensus_10225#0      TGCCTGTGACTCTGAGTAACTTGCTTTGTTCTTCCTTACTAAATCTGCAGCT-AGAGTCT 359
consensus_10225#1      TGNCTGGGACTGGGANAAACTTGCTTGGT-CTTCCNTACTAAANCTGCAGCTTANAGTCN 355
                       ** *** ****  **  ********* ** ***** ******* ******** * **** 

consensus_10225#0      CC-TGGGATATTAGAAATCGGTATTTTATGGACTTATGGAACGGCGAAAATTACTGTTGT 418
consensus_10225#1      CCCTNGGAAATTTAAAAACNGGATTTTATGGACTTATGGNACGGNGAAAATTACTGGTGG 415
                       ** * *** ***  *** * * ***************** **** *********** ** 

consensus_10225#0      ATATTGACCTCGTTTCTGATGAGTTACAGTGGCTGTACAGTGTGTGCGCGCGATTGCGTA 478
consensus_10225#1      TTTTTGACCNCGGTTNT--TGA-------------------------------------- 435
                        * ****** ** ** *  ***                                      

consensus_10225#0      TGACCGAATGCTGTTTATCTGTTTTCTGAAAA 510
consensus_10225#1      --------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)