These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1298 fasta sequence [CCAAACCCCGCGCCGCCTCTTACCGCTTCGCGTCAGCTTCGATTTGATTCGGTTCGGTTCGCGCGCGCCCCGATCTATCCCGCGCGAAGTCGATTCCCACGCCACCCGCGCTGTTATGTGCGCGGCTCCCATGGCTTCCACTGCCCAGCCGCAGCAGCAGCCGCAGCAGCAGCAGGAGCAGCAGCCGGTGGCGGCGGCGGCGGTGCCGACTCCGGCTCCTCCGGCTTCCGAGGCGCAGCCGCAG-AAGCCGACGAGGGTATCGTTGTCGTACGAGGAGATCTCCAAGCTCTTCTCGCTACCAATCGCAGAGGCAGCCTCCATCCTCGGTGTTTGCACCAGCGTTTTGAAGAGGATTTGCCGCAGCCACGGCATCGTCAGGTGGCCGTATCGAAAGCTTGTATCTGGGAAGTCTGGTGATGACACAAAAAACGCTGAAAGAGAGAAAGCCAAGGGACTTCTTGAGATATCTAAA-GTTGCAAAACAGAAGGCTCTAAG-CGCATCTGGTCTATCAACAGTATCACCAGG-CGCTTTCCAAGGAGTGGCAAAATCTCAACAGGG-AAGTT-CGAAGGCAGGACAAGTCTCACCCCCAGGAAAACAAAATGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCATCCCAACCTACATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAACTATGAAATGGTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAAAGACGATAACGGTGAAGCCCCTGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTGGGGAGCAGATGAAGCTGAAGCCGAAGCCGATGCCGATAGTGCGATCACAACCGAACCATCTGCACAGCTGTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTGCGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTTCGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATTTGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCTGATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGGATGGTAGGAGTTTTGCCTGCCTGCTTTCCCATTTCACGCATAATTCCTTTCGTCTCAAAATAACTTTATTTATTCATAATTTTATTTGTCTCTAAAAA] [+] EMBL AK058984 [CCAAACCCCGCGCCGCCTCTTACCGCTTCGCGTCAGCTTCGATTTGATTCGGTTCGGTTCGCGCGCGCCCCGATCTATCCCGCGCGAAGTCGATTCCCACGCCACCCGCGCTGTTATGTGCGCGGCTCCCATGGCTTCCACTGCCCAGCCGCAGCAGCAGCCGCAGCAGCAGCAGGAGCAGCAGCCGGTGGCGGCGGCGGCGGTGCCGACTCCGGCTCCTCCGGCTTCCGAGGCGCGGCCGCAG AAGCCGACGAGGGTATCGTTGTCGTACGAGGAGATCTCCAAGCTCTTCTCGCTACCAATCGCAGAGGCAGCCTCCATCCTCGGTGTTTGCACCAGCGTTTTGAAGAGGATTTGCCGCAGCCACGGCATCGTCAGGTGGCCGTATCGAAAGCTTGTATCTGGGAAGTCTGGTGATGACACAAAAAACGCTGAAAGAGAGAAAGCCAAGGGACTTCTTGAGATATCTAAA GTTGCAAAACAGAAGGCTCTAAG CGCATCTGGTCTATCAACAGTATCACCAGG CGCTTTCCAAGGAGTGGCAAAATCTCAACAGGG AAGTT CGAAGGCAGGACAAGTCTCACCCCCAGGAAAACAAAATGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCATCCCAACCTACATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAACTATGAAATGGTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAAAGACGATAACGGTGAAGCCCCTGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTGGGGAGCAGATGAAGCTGAAGCCGAAGCCGATGCCGATAGTGCGATCACAACCGAACCATCTGCACAGCTGTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTGCGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTTCGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATTTGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCTGATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGGATGGTAGGAGTTTTGCCTGCCTGCT ] [+] EMBL CB656088 [ GGTTCGGTTCGCGCGCGCCCCGATCTATCCCGCGCGAAGTCGATTCCCACGCCACCCGCGCTGTTATGTGCGCGGCTCCCATGGCTTCCACTGCCCAGCCGCAGCAGCAGCCGCAGCAGCAGCAGGAGCAGCAGCCGGTGGCGGCGGCGGCGGTGCCGACTCCGGCTCCTCCGGCTTCCGAGGCGCAGCCGCAG AAGCCGACGAGGGTATCGTTGTCGTACGAGGAGATCTCCAAGCTCTTCTCGCTACCAATCGCAGAGGCAGCCTCCATCCTCGGTGTTTGCACCAGCGTTTTGAAGAGGATTTGCCGCAGCCACGGCATCGTCAGGTGGCCGTATCGAAAGCTTGTATCTGGGAAGTCTGGTGATGACACAAAAAACGCTGAAAGAGAGAAAGCCAAGGGACTTCTTGAGATATCTAAA GTTGCAAAACAGAAGGCTCTAAG CGCATCTGGTCTATCAACAGTATCACCAGG CGCTTTCCAAGGAGTGGCAAAATCTCAACAGGG AAGTT CGAAGGCAGGACAAGTCTCACCCCCAGGAAAACAAAATGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCATCCCAACCTACATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAACTATGAAATGGTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAGAGACGATAACGGTGAAGCCCCTGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTGGGGAGCAGATGAAGCTGAAGCCGAAGCCGATGCCGATAGTG ] [+] EMBL AU069465 [ GGCGGCGGTNNCGACTCCGGCTTCTCCGGCTTCCGAGGCGCAGCCGCAG AAGCCGACGAGGGTATCGTTGTCGTACGAGGAGATCTCCAAGCTCTTCTCGCTACCAATCGCAGAGGCAGCCTCCATCCTCGGTGTTTGCACCAGCGTTTTGAAGAGGATTTGCCGCAGCCACGGCATCGTCAGGTGGCCGTATCGAAAGCTTGTATCTGGGAAGTCTGGTGATGACACAAAAAACGCTGAAAGAGAGAAAGCCAAGGGACTTCTTGAGATATCTAAA GTTGCAAAACAGAA GCTCTAAGCCGCATCTGGTCTATCAACAGTATCACCAGGCCGCTTTCCAAGGAGTGGCAAAATCTTAACAGGGNAAGTTCCGAAGGCAGG ] [+] EMBL AU069565 [ GGCGGCGGTGCCGACTCCGGCTCCTCCGGCTTCCNAGGCGCA CNNANGAAAGCCGACGAGGGTATCGTTGTCGTACGAGGAGATCTCCAAGCTCTTCTCGCTACCAATCGCAGAGGCAGCCTCCATCCTCGGTGTTTGCACCAGCTTTTTNAAGAGGATTTNCCGCAGCCACGGCATCGTNAGGTGGCCGTATCGAAAGCTTGTATCTGGNAAGTNTGGTGATGACACAAAAAACGCTGAANGNGAGAAAGCCAAGGGACTTNTTGAGGTATCTAAAGGTTGAAAAAAAGAAGG ] [+] EMBL AU222563 [ CCGATAGTGCGATCACAACCGAACCATCTGCACAGCTGTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTGCGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTTCGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATTTGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCTGATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGGATGGTAGGAGTTTTGCCTGCCTGCTTTCCCATTTCACGCATAATTCCTTTCGTCTCAAAATAACTTTATTTATTCATAATTTTATTTGTCTCTAAAAA] [+] EMBL AU172362 [ AGTGCGATCACAACCGAACCATCTGCACAGCTGTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTGCGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTTCGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATTTGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCTGATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGGATGGTAGGAGTTTTGCCTGCCTGCTTTCCCATTTCACGCATAATTCCTTTCGTCTCAAAATAACTTTATTTATTCATAATTTTATTTGTCTCTAAAAA] consensusID : consensus_10228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence [TGGCAAAATCTCAACAGGGAAGTTCGAAGGCAGGACAAGTCTCACCCCCAGGAAAACAAAATGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCATCCCAACCTACATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAACTATGAAATGGTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAAAGACGATAACGGTGAAGCCCCTGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTGGGGAGCAGATGAAGCTGAAGCCGAAGCCGATGCCGATAGTGCGATCACAACCGAACCATCTGCACAGCTGTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTGCGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTTCGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATTTGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCTGATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGGATGGTAGGAGTTTGGCCTGCCTGCTTTCCCATTTCCCGCAAAAAAAAAAAAAAGA] [-] EMBL CB656089 [TGGCAAAATCTCAACAGGGAAGTTCGAAGGCAGGACAAGTCTCACCCCCAGGAAAACAAAATGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCATCCCAACCTACATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAACTATGAAATGGTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAAAGACGATAACGGTGAAGCCCCTGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTGGGGAGCAGATGAAGCTGAAGCCGAAGCCGATGCCGATAGTGCGATCACAACCGAACCATCTGCACAGCTGTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTGCGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTTCGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATTTGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCTGATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGGATGGTAGGAGTTTGGCCTGCCTGCTTTCCCATTTCCCGCAAAAAAAAAAAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10228#0 CCAAACCCCGCGCCGCCTCTTACCGCTTCGCGTCAGCTTCGATTTGATTCGGTTCGGTTC 60 consensus_10228#1 ------------------------------------------------------------ consensus_10228#0 GCGCGCGCCCCGATCTATCCCGCGCGAAGTCGATTCCCACGCCACCCGCGCTGTTATGTG 120 consensus_10228#1 ------------------------------------------------------------ consensus_10228#0 CGCGGCTCCCATGGCTTCCACTGCCCAGCCGCAGCAGCAGCCGCAGCAGCAGCAGGAGCA 180 consensus_10228#1 ------------------------------------------------------------ consensus_10228#0 GCAGCCGGTGGCGGCGGCGGCGGTGCCGACTCCGGCTCCTCCGGCTTCCGAGGCGCAGCC 240 consensus_10228#1 ------------------------------------------------------------ consensus_10228#0 GCAGAAGCCGACGAGGGTATCGTTGTCGTACGAGGAGATCTCCAAGCTCTTCTCGCTACC 300 consensus_10228#1 ------------------------------------------------------------ consensus_10228#0 AATCGCAGAGGCAGCCTCCATCCTCGGTGTTTGCACCAGCGTTTTGAAGAGGATTTGCCG 360 consensus_10228#1 ------------------------------------------------------------ consensus_10228#0 CAGCCACGGCATCGTCAGGTGGCCGTATCGAAAGCTTGTATCTGGGAAGTCTGGTGATGA 420 consensus_10228#1 ------------------------------------------------------------ consensus_10228#0 CACAAAAAACGCTGAAAGAGAGAAAGCCAAGGGACTTCTTGAGATATCTAAAGTTGCAAA 480 consensus_10228#1 ------------------------------------------------------------ consensus_10228#0 ACAGAAGGCTCTAAGCGCATCTGGTCTATCAACAGTATCACCAGGCGCTTTCCAAGGAGT 540 consensus_10228#1 -----------------------------------------------------------T 1 * consensus_10228#0 GGCAAAATCTCAACAGGGAAGTTCGAAGGCAGGACAAGTCTCACCCCCAGGAAAACAAAA 600 consensus_10228#1 GGCAAAATCTCAACAGGGAAGTTCGAAGGCAGGACAAGTCTCACCCCCAGGAAAACAAAA 61 ************************************************************ consensus_10228#0 TGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCATCCCAACCTA 660 consensus_10228#1 TGTGTTGGGTGGATCAGCAATCTTGTCCTATGGTACCCAAACCAAAGGCATCCCAACCTA 121 ************************************************************ consensus_10228#0 CATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAACTATGAAATG 720 consensus_10228#1 CATGGACGACTTCAAGTACGGATTTCCATCATCTGGCTTGTCTTTGCAAACTATGAAATG 181 ************************************************************ consensus_10228#0 GTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAAAGACGATAACGGTGAAGCCCC 780 consensus_10228#1 GTGGGGGACTGACAGCCACACGGAGACCACACCTGCGAAAGACGATAACGGTGAAGCCCC 241 ************************************************************ consensus_10228#0 TGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTGGGGAGCAGA 840 consensus_10228#1 TGAATCAGCAAATGAGGCTTCGAAGGGTATGACCGACGATGAGTTGGACTGGGGAGCAGA 301 ************************************************************ consensus_10228#0 TGAAGCTGAAGCCGAAGCCGATGCCGATAGTGCGATCACAACCGAACCATCTGCACAGCT 900 consensus_10228#1 TGAAGCTGAAGCCGAAGCCGATGCCGATAGTGCGATCACAACCGAACCATCTGCACAGCT 361 ************************************************************ consensus_10228#0 GTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTG 960 consensus_10228#1 GTGCTCCCTGAGAAGGAAAGCTGTAGACGATGGGCGCAAGCTGCTGACTGGCAAGTCCTG 421 ************************************************************ consensus_10228#0 CGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTT 1020 consensus_10228#1 CGGGGGACTGGAGCTGTGCAGGCTGAATAAGAGGCAGAAGATGGCCCTCGCCCAGGTGTT 481 ************************************************************ consensus_10228#0 CGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATT 1080 consensus_10228#1 CGGAGCCTCACTGCCGGAGCAGTTGAGGAGCAAGCTCGGGTGATGATTTTGCCTGCCATT 541 ************************************************************ consensus_10228#0 TGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCT 1140 consensus_10228#1 TGTACCTCTGTGTAACACTAGTTACTAGTAGTAGCGACCGGCATGGTTAAGCTGGTTCCT 601 ************************************************************ consensus_10228#0 GATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGG 1200 consensus_10228#1 GATGTAACTTGTCCTGATCCATTTGTGTTGTGAGAACTAGATAAATTCGTTGTGAAGAGG 661 ************************************************************ consensus_10228#0 ATGGTAGGAGTTTTGCCTGCCTGCTTTCCCATTTCACGCATAATTCCTTTCGTCTCAAAA 1260 consensus_10228#1 ATGGTAGGAGTTTGGCCTGCCTGCTTTCCCATTTCCCGCAAAA--------AAAAAAAAA 713 ************* ********************* **** ** **** consensus_10228#0 TAACTTTATTTATTCATAATTTTATTTGTCTCTAAAAA 1298 consensus_10228#1 AGA----------------------------------- 716 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||