Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10238 cluster # 10238       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10238#0 length = 1950 sequences # 2  
consensus_10238#1 length = 1111 sequences # 5  

consensusID : consensus_10238#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1950
fasta sequence
                              [TATTTCGCTATGGAGTTCATGGTTTGATTTCTGTTGTGGGGGTTGTTTGATTCTTGCGCAGGTGTCGAGAGGGATCGAGTTGGTCTACGGTGGCGGCAGCGTCGGGTTGATGGGCTTGATCGCGCAGACGGTTCTTGATGGCGGCTGCGGTGTTCTCGGGTTGGAAATTTCGGCCCATGCCCTGTTCATCTTCACCAATGGCACAGTGTGGATTAATCTATAATAAAAACTTGTGGCTGTTCTTCTTGATTCTTTTGCAGGGTGATTCCAAAAGCACTCATGCCCACCGAGGTATGCAATTCTTTTTTGTCTTCTCTTCTTCTTTGTGCATTGTTCAGAAGTATTTATTGCCGACTTTCCACTATGCCTTCTAATCTAGCAGCACCTAATTGGCTAATTGGTTATTAGGCACAAGGGTCTATCACGTACTCGTATAGAATGTAAAATGACTGAAAATCTCCCCGTTTAAACAAATTAAGGAGTGATAGCATCTTAGAACGCTTGCTGTCAGATGGGTCATCTCAATCCATGCCATCGATGTATCAAGGTTTTCATGAGCATTGCATCAGCTATACAGCTCTTATATCAGTGGCCACTAGAATCAACACGACTGTTAGTCCAGCTTGATTCACCTTTGCCTATCAGCTTAGAGATAAGTGGTCATTAAGGAAATAAGGAGACAAGGAATTCGGACTAGAATTTAGGTGGTATAATTGCAGAATTTAGGTGGTGTAATTGCAGCCTAACAGTTTAGACTTTTGGGCAGTACAACTTGGCATTTTTAAACTTTGCCACTCGGTGGATGTGATATAATAGAATCTGTAACTTGCCAATAGGACAGCACAAGTTGTGAGAAAAAAGTAACAAGCAGTAGGTAATTCAAATAATGTAATCGCTCTGGTAGGCAGGTGACGATAGGCATTGGAATGATTGCAAATCTTAGTTCAGAAACTGAACATATGTAGTCATGGTCATATGGATAGGGTAAACGTAAACAAAACGATGCTCTCTCGACCTTTATCAAGGTGAAGTTATATCTCCAGAATTTTCTGACGACATGTACTGTAACTGTTTGCCCATGTTTGAAGAATAGTGACAAGTCACAAAAGATTAAGAGTAGTCTCAAAAACTTATCCTTGAAACTACGAGATTACGGCCTACTTATGTTACCATTTGACACACCAAAACTCTAATGTAGATATCAGGTGCAAGTGTTGGAGAAGTGAAAATTGTGTCTGACATGCATGAGAGGAAAGCTGAGATGGCACGCCAATCCGATGCCTTCATC-GCTCTTCCTGGAGGGTATGGAACAATGGAGGAGTTGTTAGAGATGATAACTTGGTCACAACTTGGAATTCATGACAAACCAGTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTTGATAAGGGTGCGGCAGAAGGATTTATTAAGGCCGATTGCAGACAAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGTCAGAGCTTGGTTATGGAAAGACACCAGAGGAATCGTAGCATAATCTGCTAATGTGACATTGTTCCTGAAGGAGAATTGCAGCTGCTCCTTTTATCTCCCATTTTGGTTACCTTATCGTGTTACCTGTCCAGTCAACTTCATCCGGTGAAGAAGATGCATAAGAAAATATGTACCTACCCTCGGTTTTCCTGTGGGGGAATGAACGCATGGTTATAGTCCGTATAATATTTCCTGCCTTACATAAATTAAGAGGCATTTGAGCAACAGAATCCGTGTGTTTTCTCCTTGCAAATTCTATGCAAAATTCGATTGGGTCTTGTAAATCTGCAGATGTAATGCAAGGGAACACTTCTTATATGCATAGGCTTATCAAATGAAATAAAAA]

[+] EMBL AK060272             [TATTTCGCTATGGAGTTCATGGTTTGATTTCTGTTGTGGGGGTTGTTTGATTCTTGCGCAGGTGTCGAGAGGGATCGAGTTGGTCTACGGTGGCGGCAGCGTCGGGTTGATGGGCTTGATCGCGCAGACGGTTCTTGATGGCGGCTGCGGTGTTCTCGGGTTGGAAATTTCGGCCCATGCCCTGTTCATCTTCACCAATGGCACAGTGTGGATTAATCTATAATAAAAACTTGTGGCTGTTCTTCTTGATTCTTTTGCAGGGTGATTCCAAAAGCACTCATGCCCACCGAGGTATGCAATTCTTTTTTGTCTTCTCTTCTTCTTTGTGCATTGTTCAGAAGTATTTATTGCCGACTTTCCACTATGCCTTCTAATCTAGCAGCACCTAATTGGCTAATTGGTTATTAGGCACAAGGGTCTATCACGTACTCGTATAGAATGTAAAATGACTGAAAATCTCCCCGTTTAAACAAATTAAGGAGTGATAGCATCTTAGAACGCTTGCTGTCAGATGGGTCATCTCAATCCATGCCATCGATGTATCAAGGTTTTCATGAGCATTGCATCAGCTATACAGCTCTTATATCAGTGGCCACTAGAATCAACACGACTGTTAGTCCAGCTTGATTCACCTTTGCCTATCAGCTTAGAGATAAGTGGTCATTAAGGAAATAAGGAGACAAGGAATTCGGACTAGAATTTAGGTGGTATAATTGCAGAATTTAGGTGGTGTAATTGCAGCCTAACAGTTTAGACTTTTGGGCAGTACAACTTGGCATTTTTAAACTTTGCCACTCGGTGGATGTGATATAATAGAATCTGTAACTTGCCAATAGGACAGCACAAGTTGTGAGAAAAAAGTAACAAGCAGTAGGTAATTCAAATAATGTAATCGCTCTGGTAGGCAGGTGACGATAGGCATTGGAATGATTGCAAATCTTAGTTCAGAAACTGAACATATGTAGTCATGGTCATATGGATAGGGTAAACGTAAACAAAACGATGCTCTCTCGACCTTTATCAAGGTGAAGTTATATCTCCAGAATTTTCTGACGACATGTACTGTAACTGTTTGCCCATGTTTGAAGAATAGTGACAAGTCACAAAAGATTAAGAGTAGTCTCAAAAACTTATCCTTGAAACTACGAGATTACGGCCTACTTATGTTACCATTTGACACACCAAAACTCTAATGTAGATATCAGGTGCAAGTGTTGGAGAAGTGAAAATTGTGTCTGACATGCATGAGAGGAAAGCTGAGATGGCACGCCAATCCGATGCCTTCATC GCTCTTCCTGGAGGGTATGGAACAATGGAGGAGTTGTTAGAGATGATAACTTGGTCACAACTTGGAATTCATGACAAACCAGTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTTGATAAGGGTGCGGCAGAAGGATTTATTAAGGCCGATTGCAGACAAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGTCAGAGCTTGGTTATGGAAAGACACCAGAGGAATCGTAGCATAATCTGCTAATGTGACATTGTTCCTGAAGGAGAATTGCAGCTGCTCCTTTTATCTCCCATTTTGGTTACCTTATCGTGTTACCTGTCCAGTCAACTTCATCCGGTGAAGAAGATGCATAAGAAAATATGTACCTACCCTCGGTTTTCCTGTGGGGGAATGAACGCATGGTTATAGTCCGTATAATATTTCCTGCCTTACATAAATTAAGAG                                                                                                                                     ]
[+] EMBL AU101598             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CAATCCGATGCTTTCATCGGCTCTTCCTGAAGGGTATGGACCAATGNAGGAGTTGTTAGAGATGATAACTTGGTCACAACTTGGAATTCATGACAAACCAGTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTTGATAAGGGTGCGGCAGAAGGATTTATTAAGGCCGATTGCAGACAAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGTCAGAGCTTGGTTATGGAAAGACACCAGAGGAATCGTAGCATAATCTGCTAATGTGACATTGTTCCTGAAGGAGAATTGCAGCTGCTCCTTTTATCTCCCATTTTGGTTACCTTATCGTGTTACCTGTCCAGTCAACTTCATCCGGTGAAGAAGATGCATAAGAAAATATGTACCTACCCTCGGTTTTCCTGTGGGGGAATGAACGCATGGTTATAGTCCGTATAATATTTCCTGCCTTACATAAATTAAGAGGCATTTGAGCAACAGAATCCGTGTGTTTTCTCCTTGCAAATTCTATGCAAAATTCGATTGGGTCTTGTAAATCTGCAGATGTAATGCAAGGGAACACTTCTTATATGCATAGGCTTATCAAATGAAATAAAAA]


>consensus_10238#0 TATTTCGCTATGGAGTTCATGGTTTGATTTCTGTTGTGGGGGTTGTTTGATTCTTGCGCA GGTGTCGAGAGGGATCGAGTTGGTCTACGGTGGCGGCAGCGTCGGGTTGATGGGCTTGAT CGCGCAGACGGTTCTTGATGGCGGCTGCGGTGTTCTCGGGTTGGAAATTTCGGCCCATGC CCTGTTCATCTTCACCAATGGCACAGTGTGGATTAATCTATAATAAAAACTTGTGGCTGT TCTTCTTGATTCTTTTGCAGGGTGATTCCAAAAGCACTCATGCCCACCGAGGTATGCAAT TCTTTTTTGTCTTCTCTTCTTCTTTGTGCATTGTTCAGAAGTATTTATTGCCGACTTTCC ACTATGCCTTCTAATCTAGCAGCACCTAATTGGCTAATTGGTTATTAGGCACAAGGGTCT ATCACGTACTCGTATAGAATGTAAAATGACTGAAAATCTCCCCGTTTAAACAAATTAAGG AGTGATAGCATCTTAGAACGCTTGCTGTCAGATGGGTCATCTCAATCCATGCCATCGATG TATCAAGGTTTTCATGAGCATTGCATCAGCTATACAGCTCTTATATCAGTGGCCACTAGA ATCAACACGACTGTTAGTCCAGCTTGATTCACCTTTGCCTATCAGCTTAGAGATAAGTGG TCATTAAGGAAATAAGGAGACAAGGAATTCGGACTAGAATTTAGGTGGTATAATTGCAGA ATTTAGGTGGTGTAATTGCAGCCTAACAGTTTAGACTTTTGGGCAGTACAACTTGGCATT TTTAAACTTTGCCACTCGGTGGATGTGATATAATAGAATCTGTAACTTGCCAATAGGACA GCACAAGTTGTGAGAAAAAAGTAACAAGCAGTAGGTAATTCAAATAATGTAATCGCTCTG GTAGGCAGGTGACGATAGGCATTGGAATGATTGCAAATCTTAGTTCAGAAACTGAACATA TGTAGTCATGGTCATATGGATAGGGTAAACGTAAACAAAACGATGCTCTCTCGACCTTTA TCAAGGTGAAGTTATATCTCCAGAATTTTCTGACGACATGTACTGTAACTGTTTGCCCAT GTTTGAAGAATAGTGACAAGTCACAAAAGATTAAGAGTAGTCTCAAAAACTTATCCTTGA AACTACGAGATTACGGCCTACTTATGTTACCATTTGACACACCAAAACTCTAATGTAGAT ATCAGGTGCAAGTGTTGGAGAAGTGAAAATTGTGTCTGACATGCATGAGAGGAAAGCTGA GATGGCACGCCAATCCGATGCCTTCATCGCTCTTCCTGGAGGGTATGGAACAATGGAGGA GTTGTTAGAGATGATAACTTGGTCACAACTTGGAATTCATGACAAACCAGTTGGGTTGCT GAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTTGATAAGGGTGCGGCAGAAGG ATTTATTAAGGCCGATTGCAGACAAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCT GAGAAAGATGGAGCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGA GATGTCAGAGCTTGGTTATGGAAAGACACCAGAGGAATCGTAGCATAATCTGCTAATGTG ACATTGTTCCTGAAGGAGAATTGCAGCTGCTCCTTTTATCTCCCATTTTGGTTACCTTAT CGTGTTACCTGTCCAGTCAACTTCATCCGGTGAAGAAGATGCATAAGAAAATATGTACCT ACCCTCGGTTTTCCTGTGGGGGAATGAACGCATGGTTATAGTCCGTATAATATTTCCTGC CTTACATAAATTAAGAGGCATTTGAGCAACAGAATCCGTGTGTTTTCTCCTTGCAAATTC TATGCAAAATTCGATTGGGTCTTGTAAATCTGCAGATGTAATGCAAGGGAACACTTCTTA TATGCATAGGCTTATCAAATGAAATAAAAA



consensusID : consensus_10238#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1111
fasta sequence
                              [CCGGATAACACAGCGCACAGAAAAGAGAAGCTGCCAAACCCGGCCACCTCCTCCTCTCCTCTCCTCCCCCATCGCCTTCCCCAATCCGTCGGCGAGGCCAAGGCAGGCAGGAAGCCATGGGCGACAACAGCGCCGCCGCGGCGG-CCGTGGCCGCGCCGCGCGGCAG-GTTCGGCAGGATCTGCGTCTTCTGCGGCAGCAACGCCGGCAACCGCGCGGTGTTCGGCGACGCGGCGCTCCAGCTCGGGCAGGAGCTGGTGTCGAGAGGGATCGAGTTGGTCTACGGTGGCGGCAGCGTCGGGTTGATGGGCTTGATCGCGCAGACGGTTCTTGATGGCGGCTGCGGTGTTCTCGGGGTGATTCCAAAAGCACTCATGCCCA-CCGAGATA-TCAGGTGCAAGTGTTGGAGAAGTGAAAATTGTGTCTGACATGCATGAGAGGAAAGCTGAGATGGCACGCCAATCCGATGCCTTCATCGCTCTTCCTGGAGGGTATGGAACAATGGAGGAGTTGTTAGAGATGATAACTTGGTCACAACTTGGAATTCATGACAAACCAGTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTTGATAAGGGTGCGGCAGAAGGATTTATTAAGGCCGATTGCAGACAAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGTCAGAGCTTGGTTATGGAAAGACACCAGAGGAATCGTAGCATAATCTGCTAATGTGACATTGTTCCTGAAGGAGAATTGCAGCTGCTCCTTTTATCTCCCATTTTGGTTACCTTATCGTGTTACCTGTCCAGTCAACTTCATCCGGTGAAGAAGATGCATAAGAAAATATGTACCTACCCTCGGTTTTCCTGTGGGGGAATGAACGCATGGTTATAGTCC-GTATAATATTTCCTGCCTTACATAAATTAAGAGGCATTTGAGCAACAGAATCCGTGTGTTTTCTCCTTGCAAATTCTATGCAAAATTCGATTGGGTCTTGTAAATCTGCAGATGTAATGCAAGGGAACACTTCTTATATGCA]

[+] EMBL OSR01731A            [CCGGATAACACAGCGCACAGAAAAGAGAAGCTGCCAAACCCGGCCACCTCCTCCTCTCCTCTCCTCCCCCATCGCCTTCCCCAATCCGTCGGCGAGGCCAAGGCAGGCAGGAAGCCATGGGCGACAACAGCGNCGCCGCGGCGGCCCGTGGCCGCGCCGCGCGGCAGNGTTCGGCAGGATCTGCGTCTTCTGCGGCAG AACGCCGGCAACCGCGCGGTGTTCGGCGACGCGGCGCTCCAGCTCGGGCAGGAGCTGGTGTCGAGAGGGATCGAGTTGGTCTACGGTGGCGGCAGCNTCGGGTTGATGGGCTTNATCGCGCAGACGGTTCTTGATGGCGGCTGCGGTGTTCTCGGGGTGATTCCAAAAGCACTCATGCCCACCCGCGATATTAAGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK061091             [          CAGCGCACAGAAAAGAGAAGCTGCCAAACCCGGCCACCTCCTCCTCTCCTCTCCTCCCCCATCGCCTTCCCCAATCCGTCGGCGAGGCCAAGGCAGGCAGGAAGCCATGGGCGACAACAGCGCCGCCGCGGCGG CCGTGGCCGCGCCGCGCGGCAG GTTCGGCAGGATCTGCGTCTTCTGCGGCAGCAACGCCGGCAACCGCGCGGTGTTCGGCGACGCGGCGCTCCAGCTCGGGCAGGAGCTGGTGTCGAGAGGGATCGAGTTGGTCTACGGTGGCGGCAGCGTCGGGTTGATGGGCTTGATCGCGCAGACGGTTCTTGATGGCGGCTGCGGTGTTCTCGGGGTGATTCCAAAAGCACTCATGCCCA CCGAGATA TCAGGTGCAAGTGTTGGAGAAGTGAAAATTGTGTCTGACATGCATGAGAGGAAAGCTGAGATGGCACGCCAATCCGATGCCTTCATCGCTCTTCCTGGAGGGTATGGAACAATGGAGGAGTTGTTAGAGATGATAACTTGGTCACAACTTGGAATTCATGACAAACCAGTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTTGATAAGGGTGCGGCAGAAGGATTTATTAAGGCCGATTGCAGACAAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGTCAGAGCTTGGTTATGGAAAGACACCAGAGGAATCGTAGCATAATCTGCTAATGTGACATTGTTCCTGAAGGAGAATTGCAGCTGCTCCTTTTATCTCCCATTTTGGTTACCTTATCGTGTTACCTGTCCAGTCAACTTCATCCGGTGAAGAAGATGCATAAGAAAATATGTACCTACCCTCGGTTTTCCTGTGGGGGAATGAACGCATGGTTATAGTCC GTATAATATTTCCTGCCTTACATAAATTAAGAGGCATTTGAGCAACAGAATCCGTGTGTTTTCTCCTTGCAAATTCTATGCAAAATTCGATTGGGTCTTGTAAATCTGCAGATGTAATGCAAGGGAACACTTCTTATATGCA]
[+] EMBL AK099170             [                                                                                               GGCCAAGGCAGGCAGGAAGCCATGGGCGACAACAGCGCCGCCGCGGCGG CCGTGGCCGCGCCGCGCGGCAG GTTCGGCAGGATCTGCGTCTTCTGCGGCAGCAACGCCGGCAACCGCGCGGTGTTCGGCGACGCGGCGCTCCAGCTCGGGCAGGAGCTGGTGTCGAGAGGGATCGAGTTGGTCTACGGTGGCGGCAGCGTCGGGTTGATGGGCTTGATCGCGCAGACGGTTCTTGATGGCGGCTGCGGTGTTCTCGGGGTGATTCCAAAAGCACTCATGCCCA CCGAGATA TCAGGTGCAAGTGTTGGAGAAGTGAAAATTGTGTCTGACATGCATGAGAGGAAAGCTGAGATGGCACGCCAATCCGATGCCTTCATCGCTCTTCCTGGAGGGTATGGAACAATGGAGGAGTTGTTAGAGATGATAACTTGGTCACAACTTGGAATTCATGACAAACCAGTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTTGATAAGGGTGCGGCAGAAGGATTTATTAAGGCCGATTGCAGACAAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGTCAGAGCTTGGTTATGGAAAGACACCAGAGGAATCGTAGCATAATCTGCTAATGTGACATTGTTCCTGAAGGAGAATTGCAGCTGCTCCTTTTATCTCCCATTTTGGTTACCTTATCGTGTTACCTGTCCAGTCAACTTCATCCGGTGAAGAAGATGCATAAGAAAATATGTACCTACCCTCGGTTTTCCTGTGGGGGAATGAACGCATGGTTATAGTCC GTATAATATTTCCTGCCTTACATAAATTAAGAG                                                                                                             ]
[+] EMBL C72472               [                                                                                                                                                                                                                                                                                                                                                        cttttgacaGGGTGATTCCAAAAGCACTCATGCCCA CCGAGATA TCAGGTGCAAGTGTTGGAGAAGTGAAAATTGTGTCTGACATGCATGAGAGGAAAGCTGAGATGGCACGCCAATCCGATGCCTTCATCGCTCTTCCTGGAGGGTATGGAACAATGGAGGAGTTGTTAGAGATGATAACTTGGTCACAACTTGGAATTCATGACAAACCAGTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTTGATAAGGGTGCGGCAGAAGGATTTATTAAGGCCGATTGCAGACAAATAATTGTTTCGGCACCGACTGCGCATGANCTGCTGAGAAAGATGGAGCAATACACTCGTTCACACCAGGAGGTAGCG CACGTACAAGCTGGGAGATGTCAGACCTT GTTATGGAAAAGCNCCAGAGG ATCGTAGCATAATCTGCCAATGTGACATTG TCCTGAAGGAGAATTGCAnt                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU182309             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GATTGCAGACAAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGTCAGAGCTTGGTTATGGAAAGACACCAGAGGAATCGTAGCATAATCTGCTAATGTGACATTGTTCCTGAAGGAGAATTGCAGCTGCTCCTTTTATCTCCCATTTTGGTTACCTTATCGTGTTACCTGTCCAGTCAACTTCATCCGGTGAAGAAGATGCATAAGAAAATATGTACCTACCCTCGGTTTTCCTGTGGGGGAATGAACGCATGGTTATAGTCCNGTATAATATTTCCTGCCTTACATAAATTAAGAGGCATTTGAGCAACAGAATCCGTGTGTTTTCTCCTTGCAAATTCTATGCAAAATTCGATTGGGTCTTGTAAAaaaaaaa                               ]


>consensus_10238#1 CCGGATAACACAGCGCACAGAAAAGAGAAGCTGCCAAACCCGGCCACCTCCTCCTCTCCT CTCCTCCCCCATCGCCTTCCCCAATCCGTCGGCGAGGCCAAGGCAGGCAGGAAGCCATGG GCGACAACAGCGCCGCCGCGGCGGCCGTGGCCGCGCCGCGCGGCAGGTTCGGCAGGATCT GCGTCTTCTGCGGCAGCAACGCCGGCAACCGCGCGGTGTTCGGCGACGCGGCGCTCCAGC TCGGGCAGGAGCTGGTGTCGAGAGGGATCGAGTTGGTCTACGGTGGCGGCAGCGTCGGGT TGATGGGCTTGATCGCGCAGACGGTTCTTGATGGCGGCTGCGGTGTTCTCGGGGTGATTC CAAAAGCACTCATGCCCACCGAGATATCAGGTGCAAGTGTTGGAGAAGTGAAAATTGTGT CTGACATGCATGAGAGGAAAGCTGAGATGGCACGCCAATCCGATGCCTTCATCGCTCTTC CTGGAGGGTATGGAACAATGGAGGAGTTGTTAGAGATGATAACTTGGTCACAACTTGGAA TTCATGACAAACCAGTTGGGTTGCTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGC TATTTGATAAGGGTGCGGCAGAAGGATTTATTAAGGCCGATTGCAGACAAATAATTGTTT CGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGCAATACACTCGTTCACACCAGG AGGTAGCGCCACGTACAAGCTGGGAGATGTCAGAGCTTGGTTATGGAAAGACACCAGAGG AATCGTAGCATAATCTGCTAATGTGACATTGTTCCTGAAGGAGAATTGCAGCTGCTCCTT TTATCTCCCATTTTGGTTACCTTATCGTGTTACCTGTCCAGTCAACTTCATCCGGTGAAG AAGATGCATAAGAAAATATGTACCTACCCTCGGTTTTCCTGTGGGGGAATGAACGCATGG TTATAGTCCGTATAATATTTCCTGCCTTACATAAATTAAGAGGCATTTGAGCAACAGAAT CCGTGTGTTTTCTCCTTGCAAATTCTATGCAAAATTCGATTGGGTCTTGTAAATCTGCAG ATGTAATGCAAGGGAACACTTCTTATATGCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10238#0      TATTTCGCTATGGAGTTCATGGTTTGATTTCTGTTGTGGGGGTTGTTTGATTCTTGCGCA 60
consensus_10238#1      ------------------------------------------------------------
                                                                                   

consensus_10238#0      GGTGTCGAGAGGGATCGAGTTGGTCTACGGTGGCGGCAGCGTCGGGTTGATGGGCTTGAT 120
consensus_10238#1      ------------------------------------------------------------
                                                                                   

consensus_10238#0      CGCGCAGACGGTTCTTGATGGCGGCTGCGGTGTTCTCGGGTTGGAAATTTCGGCCCATGC 180
consensus_10238#1      ------------------------------------------------------------
                                                                                   

consensus_10238#0      CCTGTTCATCTTCACCAATGGCACAGTGTGGATTAATCTATAATAAAAACTTGTGGCTGT 240
consensus_10238#1      ------------------------------------------------------------
                                                                                   

consensus_10238#0      TCTTCTTGATTCTTTTGCAGGGTGATTCCAAAAGCACTCATGCCCACCGAGGTATGCAAT 300
consensus_10238#1      ------------------------------------------------------------
                                                                                   

consensus_10238#0      TCTTTTTTGTCTTCTCTTCTTCTTTGTGCATTGTTCAGAAGTATTTATTGCCGACTTTCC 360
consensus_10238#1      ------------------------------------------------------------
                                                                                   

consensus_10238#0      ACTATGCCTTCTAATCTAGCAGCACCTAATTGGCTAATTGGTTATTAGGCACAAGGGTCT 420
consensus_10238#1      ------------------------------------------------------------
                                                                                   

consensus_10238#0      ATCACGTACTCGTATAGAATGTAAAATGACTGAAAATCTCCCCGTTTAAACAAATTAAGG 480
consensus_10238#1      ------------------------------------------------------------
                                                                                   

consensus_10238#0      AGTGATAGCATCTTAGAACGCTTGCTGTCAGATGGGTCATCTCAATCCATGCCATCGATG 540
consensus_10238#1      ------------------------------------------------------------
                                                                                   

consensus_10238#0      TATCAAGGTTTTCATGAGCATTGCATCAGCTATACAGCTCTTATATCAGTGGCCACTAGA 600
consensus_10238#1      ------------------------------------------------------------
                                                                                   

consensus_10238#0      ATCAACACGACTGTTAGTCCAGCTTGATTCACCTTTGCCTATCAGCTTAGAGATAAGTGG 660
consensus_10238#1      ------------------------------------------------------------
                                                                                   

consensus_10238#0      TCATTAAGGAAATAAGGAGACAAGGAATTCGGACTAGAATTTAGGTGGTATAATTGCAGA 720
consensus_10238#1      ------------------------------------------------------------
                                                                                   

consensus_10238#0      ATTTAGGTGGTGTAATTGCAGCCTAACAGTTTAGACTTTTGGGCAGTACAACTTGGCATT 780
consensus_10238#1      ------------------------------------------------------------
                                                                                   

consensus_10238#0      TTTAAACTTTGCCACTCGGTGGATGTGATATAATAGAATCTGTAACTTGCCAATAGGACA 840
consensus_10238#1      ---------------CCGGATAACACAGCGCA-CAGAAAAGAGAAGCTGCCAA---ACCC 41
                                       ***   *        *  ****     **  ******     * 

consensus_10238#0      GCACAAGTTGTGAGAAAAAAGTAACAAGCAGTAGGTAATTCAAATAAT-GTAATCGCTCT 899
consensus_10238#1      GGCCACCTCCTCCTCTCCTCTCCTCCCCCATCGCCTTCCCCAATCCGTCGGCGAGGCCAA 101
                       *  **  *  *             *   **     *    ***    * *     **   

consensus_10238#0      GGTAGGCAGGTGACGATAGGCATTGGAATGATTGCAAATCTTAGTTCAGAAACTGAACAT 959
consensus_10238#1      GGCAGGCAGGAAGCCATGGGCGACAACAGCGCCGCCGCGGCGGCCGTGGCCGCGCCGCGC 161
                       ** *******   * ** ***      *     **             *   *    *  

consensus_10238#0      ATGTAGTCATGGTCATATGGATAGGGTAAACGTAAACAAAAC-GATGCTCTCTCGACCTT 1018
consensus_10238#1      G-GCAGGTTCGGCAGGATCTGCGTCTTCTGCGGCAGCAACGCCGGCAACCGCGCGGTGTT 220
                         * **    **    **        *   **  * ***  * *     * * **   **

consensus_10238#0      TATCAAGGTGAAGTTATATCTCCAGAATTTTCTGACGACATGTACTGTAACTGTTTGCCC 1078
consensus_10238#1      CGGCGACGCGGCGCTCCAGCTCGGGCAGGAGCTGGTGTCGAGAGGGATCGA-GTTGGTCT 279
                          * * * *  * *  * ***  * *    ***  * *  *     *    *** * * 

consensus_10238#0      ATGTTTGAAGAATAGTGACAAGTCACAAAAGATTAAGAGTAGTCTCAAAAACTTATCCTT 1138
consensus_10238#1      ACGGTGGCGG--CAGCGTCGGGTTGA-------TGGGCTTGATCGCGCAGACG-GTTCTT 329
                       * * * *  *   ** * *  **          *  *  *  ** *  * **   * ***

consensus_10238#0      GAAACTACGAGATTACGGCCTACTTATGTTACCATTTGACACACCAAAACTCTAATGTAG 1198
consensus_10238#1      GATG----GCGGCTGCGGTGTTCTCGGGGTGATTCCAAAAGCACTCATGCCC--ACCGAG 383
                       **      * *  * ***  * **   * *        *  ***  *  * *  *   **

consensus_10238#0      ATATCAGGTGCAAGTGTTGGAGAAGTGAAAATTGTGTCTGACATGCATGAGAGGAAAGCT 1258
consensus_10238#1      ATATCAGGTGCAAGTGTTGGAGAAGTGAAAATTGTGTCTGACATGCATGAGAGGAAAGCT 443
                       ************************************************************

consensus_10238#0      GAGATGGCACGCCAATCCGATGCCTTCATCGCTCTTCCTGGAGGGTATGGAACAATGGAG 1318
consensus_10238#1      GAGATGGCACGCCAATCCGATGCCTTCATCGCTCTTCCTGGAGGGTATGGAACAATGGAG 503
                       ************************************************************

consensus_10238#0      GAGTTGTTAGAGATGATAACTTGGTCACAACTTGGAATTCATGACAAACCAGTTGGGTTG 1378
consensus_10238#1      GAGTTGTTAGAGATGATAACTTGGTCACAACTTGGAATTCATGACAAACCAGTTGGGTTG 563
                       ************************************************************

consensus_10238#0      CTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTTGATAAGGGTGCGGCAGAA 1438
consensus_10238#1      CTGAATGTGGACGGTTACTATGATCCGTTGCTTGCGCTATTTGATAAGGGTGCGGCAGAA 623
                       ************************************************************

consensus_10238#0      GGATTTATTAAGGCCGATTGCAGACAAATAATTGTTTCGGCACCGACTGCGCATGAGCTG 1498
consensus_10238#1      GGATTTATTAAGGCCGATTGCAGACAAATAATTGTTTCGGCACCGACTGCGCATGAGCTG 683
                       ************************************************************

consensus_10238#0      CTGAGAAAGATGGAGCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGG 1558
consensus_10238#1      CTGAGAAAGATGGAGCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGG 743
                       ************************************************************

consensus_10238#0      GAGATGTCAGAGCTTGGTTATGGAAAGACACCAGAGGAATCGTAGCATAATCTGCTAATG 1618
consensus_10238#1      GAGATGTCAGAGCTTGGTTATGGAAAGACACCAGAGGAATCGTAGCATAATCTGCTAATG 803
                       ************************************************************

consensus_10238#0      TGACATTGTTCCTGAAGGAGAATTGCAGCTGCTCCTTTTATCTCCCATTTTGGTTACCTT 1678
consensus_10238#1      TGACATTGTTCCTGAAGGAGAATTGCAGCTGCTCCTTTTATCTCCCATTTTGGTTACCTT 863
                       ************************************************************

consensus_10238#0      ATCGTGTTACCTGTCCAGTCAACTTCATCCGGTGAAGAAGATGCATAAGAAAATATGTAC 1738
consensus_10238#1      ATCGTGTTACCTGTCCAGTCAACTTCATCCGGTGAAGAAGATGCATAAGAAAATATGTAC 923
                       ************************************************************

consensus_10238#0      CTACCCTCGGTTTTCCTGTGGGGGAATGAACGCATGGTTATAGTCCGTATAATATTTCCT 1798
consensus_10238#1      CTACCCTCGGTTTTCCTGTGGGGGAATGAACGCATGGTTATAGTCCGTATAATATTTCCT 983
                       ************************************************************

consensus_10238#0      GCCTTACATAAATTAAGAGGCATTTGAGCAACAGAATCCGTGTGTTTTCTCCTTGCAAAT 1858
consensus_10238#1      GCCTTACATAAATTAAGAGGCATTTGAGCAACAGAATCCGTGTGTTTTCTCCTTGCAAAT 1043
                       ************************************************************

consensus_10238#0      TCTATGCAAAATTCGATTGGGTCTTGTAAATCTGCAGATGTAATGCAAGGGAACACTTCT 1918
consensus_10238#1      TCTATGCAAAATTCGATTGGGTCTTGTAAATCTGCAGATGTAATGCAAGGGAACACTTCT 1103
                       ************************************************************

consensus_10238#0      TATATGCATAGGCTTATCAAATGAAATAAAAA 1950
consensus_10238#1      TATATGCA------------------------ 1111
                       ********                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)