|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1198 fasta sequence
[ACAAGCATGTGCATTCCCTTCATTCATGATACAGAAACAAAGTTCTGGATACAGAAACAGAGTTCTGCATAACAAATCTATGGCAAGTGATGTATGTTATTTCGATCAACACCGTATGGCACACTTATTGTTCAACTGGACACCAAACAATGTTTTATGTCAGCAATTTACAGATAAATCTGTGACGAACAAATACGACGACGATCTGAGGATCATCAGGCTGTGCACATTACATATAGAAGAAGAAAAACCAATAGGGGGAAATCAATGGCGACTGGACGATCGTGTGGAGTTTGGACTGCACAGTGGCGTGGGAGGATTCAACTTCTTCTAGGCTCAAGCCTGGGCAAGCTTCTTCACTATGGAGGCCATGTACTTGCCCTGGTGCTCGGCTAGGGCGAGCTCCGTCTCGCTGGGCTGTCTGCCGCCATCACCAGCGAAGACGCCAGCGCCATAGGGGCTGCCTCCTCTGATCTCATCCATCTTGAACATGCCTGACCCGAAGGTGTAGCCAATCGGGACAAAGAGCATTCCATGGTGCACTATCTGGGTGATTGCCGTCCAAGCGGTGGTCTCCTGGCCGCCTCCCTGCGTGCCGGTGCTGACGAAGAACCCGGCGGGCTTCCCGGCGAGCTTCTGCTTCTCCCAGAGGGAGCCGGTGGAGTCGAAGAACGCCTTCATCTGCGCGGCCATGGCGCCGTACCTCGTCGGGAACCCGAACAGCACCCCGTCGGCCTCCTCCAGGTCCGCCGCCGCCGCGATGACCGGGACGGCGGGGTCCTTGGCCGGCGCCTGCATCTTCTCCAGCACGCCCGGCGGGAGCGTCTCGGGGACGCGCCGCAGCACCGCCTCCACCCCGTCCACCGCCGCGACGCCCGCCGCCGC-CCGCCGCGCC-AGCGCCTCCACGTGCCCGTACATCGAGTAGAACACGATGTACAGCCGCAGCCTCCGCCGCCCCCCGGCCGCCTCCCCCGACGCCTCCGCCTCGGGGGCGTCGCGCGGCGCCGACGACGACGACGGCGCGCCGGCGACGGTGCTGGCCGGCGCTGCCGCTTCTTGCTGGGGACGCAGCCGCCGCCCTTCCCCATCACCGGCCGGTCAAACCCAACTCCGCCGCGGCGGCGCCCCCCAAGAAAGCAAGCTCGGGAGTTGGGCCGNCGCGCTGCTCGTGCTCCGTCGCGTCTCGGGGAGGTGGAGT]
[+] EMBL BI306066 [ACAAGCATGTGCATTCCCTTCATTCATGATACAGAAACAAAGTTCTGGATACAGAAACAGAGTTCTGCATAACAAATCTATGGCAAGTGATGTATGTTATTTCGATCAACACCGTATGGCACACTTATTGTTCAACTGGACACCAAACAATGTTTTATGTCAGCAATTTACAGATAAATCTGTGACGAACAAATACGACGACGATCTGAGGATCATCAGGCTGTGCACATTACATATAGAAGAAGAAAAACCAATAGGGGGAAATCAATGGCGACTGGACGATCGTGTGGAGTTTGGACTGCACAGTGGCGTGGGAGGATTCAACTTCTTCTAGGCTCAAGCCTGGGCAAGCTTCTTCACTATGGAGGCCATGTACTTGCCCTGGTGCTCGGCTAGGGCGAGCTCCGTCTCGCTGGGCTGTCTGCCGCCATCACCAGCGAAGACGCCAGCGCCATAGGGGCTGCCTCCTCTGATCTCATCCATCTTGAACATGCCTGACCCGAAGGTGTAGCCAATCGGGACAAAGAGCATTCCATGGTGCACTATCTGGGTGATTGCCGTCCAAGCGGTGGTCTCCTGGCCGCCTCCCTGCGTGCCGGTGCTGACGAAGAACCCGGCGGGCTTCCCGGCGAGCTTCTGCTTCTCCCAGAGGGAGCCGGTGGAGTCGAAGAACGCC ]
[-] EMBL CA758050 [ tttttttTATGGCAAGTGATGTATGTTATTTCGATCAACACCGTATGGCACACTTATTGTTCAACTGGACACCAAACAATGTTTTATGTCAGCAATTTACAGATAAATCTGTGACGAACAAATACGACGACGATCTGAGGATCATCAGGCTGTGCACATTACATATAGAAGAAGAAAAACCAATAGGGGGAAATCAATGGCGACTGGACGATCGTGTGGAGTTTGGACTGCACAGTGGCGTGGGAGGATTCAACTTCTTCTAGGCTCAAGCCTGGGCAAGCTTCTTCACTATGGAGGCCATGTACTTGCCCTGGTGCTCGGCTAGGGCGAGCTCCGTCTCGCTGGGCTGTCTGCCGCCATCACCAGCGAAGACGCCAGCG ]
[-] EMBL AU172965 [ GCTTTCCGGCGAGCTTCTGCTTCTCCCAGAGGGAGCCGGTGGAGTCGAAGAACGCCTTCATCTGCGCGGCCATGGCGCCGTACCTCGTCGGGAACCCGAACAGCACCCCGTCGGCCTCCTCCAGGTCCGCCGCCGCCGCGATGACCGGGACGGCGGGGTCCTTGGCCGGCGCCTGCATCTTCTCCAGCACGCCCGGCGGGAGCGTCTCGGGGACGCGCCGCAGCACCGCCTCCACCCCGTCCACCGCCGCGACGCCCGCCGCCGC CCGCCGCGCC AGCGCCTCCACGTGCCCGTACATCGAGTAGAACACGATGTACAGCCGCAGCCTCCGCCGCCCCCCGGCCGCCTCCCCCGACGCCTCCGCCTCGGGGGCGTCGCGCGGCGCCGACGACGACGACGGCGCGCCGGCGACGGTGCTGGCCGGCG ]
[-] EMBL AU032065 [ CCCCGTCCACCGCCGCNACGCCCGCCGCCGCTNCGCCGCGCCAAGCGCCTCCACGTGCCCGTACATCGAGTAGAACACGATGTACAGCCGCAGCCTCCGCCGCCCCCCGGCCGCCTCCCCCGACGCCTCCGCCTCGGGGACGTCGCGCGGCGCCGACGACGACGACGGCGCGCCGGCGACGGTGCTGGCCGGCGCTGCCGCTTCTTGCTGGGGACGCAGCCGCCGCCCTTCCCCATCACCGGCCGGTCAAACCCAACTCCGCCGCGGCGGCGCCCCCCAAGAAAGCAAGCTCGGGAGTTGGGCCGNCGCGCTGCTCGTGCTCCGTCGCGTCTCGGGGAGGTGGAGT]
consensusID : consensus_10243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence
[TTTTTTTTTTATGGCAAGTGATGTATGTTATGGGATCAACACCGTATGGACACTTAGTGTTCAACTGGACACCAAACAATGTTTTATGTCAACAATTTACAGATAAATCTGTGACGAACAAATACGAGACGATCTGAGGATCATCAGGGGTGGGGCATTACATTATTGAAGAAGAAAAAACCAAATAGGGGGGGAAATCAATTGGNGACTGGACGATCGTGTGGAGTTTGGACTGACCAGTGGCGTCCGGTGGGAGGGATTTCCAACTTTCTTCTGGGGCTCAAGCCTNGGGCAAGCTTTCTTCACTATGGGAGGGCATGTACTTTGCCCTGGTGCTCGGGTAAGGCGGAAGCTCCGTCTCGCTTGGGGCTGTCTGGTGCATCACCAGCGAAGACGCCAGCGCCATAGGGGGGTTGGCTCCTCTGATCTCATCCATCTTGAACATGCCT]
[-] EMBL BI805384 [TTTTTTTTTTATGGCAAGTGATGTATGTTATGGGATCAACACCGTATGGACACTTAGTGTTCAACTGGACACCAAACAATGTTTTATGTCAACAATTTACAGATAAATCTGTGACGAACAAATACGAGACGATCTGAGGATCATCAGGGGTGGGGCATTACATTATTGAAGAAGAAAAAACCAAATAGGGGGGGAAATCAATTGGNGACTGGACGATCGTGTGGAGTTTGGACTGACCAGTGGCGTCCGGTGGGAGGGATTTCCAACTTTCTTCTGGGGCTCAAGCCTNGGGCAAGCTTTCTTCACTATGGGAGGGCATGTACTTTGCCCTGGTGCTCGGGTAAGGCGGAAGCTCCGTCTCGCTTGGGGCTGTCTGGTGCATCACCAGCGAAGACGCCAGCGCCATAGGGGGGTTGGCTCCTCTGATCTCATCCATCTTGAACATGCCT]
consensusID : consensus_10243#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence
[TTCATGTGCATATNNGGGNGATTGCGTCAAGCGTGTTATGCGCTCCTGGTGCCGGTGGTGAAGAAAGAACCCGGCGGGGTTCCCGGNGAGTTTNTGTTNTCCCAGAGGGAGCCGGTGGAGTCGAAGAACGCNTTCATTTGCGCGGCCATGGAGCNGTACTTNGTCGGGAACCCGAACAGCACCCCGTCGGCTTCNTNCAGGTCCGCCGCCGCCGCGATGACCGGGACGGCGGGGTCCTTGGCCGGCGCCTGCATCTTNTCCAGCACGCCCGGCGGGAGCGTCTCGGGGACGCGCCGCAGCACCGCNTCCACCCCGTCCACCGCCGGGACGCCCGCCGCCGCCCGCCGCGCCAGCGCCTCCACGTGCCCGTACATCGGTAGAACACGATGTACAGCCGCAGCTTCCGCCGCCCCCCGGCCGCNTCCCCCGACGC]
[-] EMBL AA751926 [TTCATGTGCATATNNGGGNGATTGCGTCAAGCGTGTTATGCGCTCCTGGTGCCGGTGGTGAAGAAAGAACCCGGCGGGGTTCCCGGNGAGTTTNTGTTNTCCCAGAGGGAGCCGGTGGAGTCGAAGAACGCNTTCATTTGCGCGGCCATGGAGCNGTACTTNGTCGGGAACCCGAACAGCACCCCGTCGGCTTCNTNCAGGTCCGCCGCCGCCGCGATGACCGGGACGGCGGGGTCCTTGGCCGGCGCCTGCATCTTNTCCAGCACGCCCGGCGGGAGCGTCTCGGGGACGCGCCGCAGCACCGCNTCCACCCCGTCCACCGCCGGGACGCCCGCCGCCGCCCGCCGCGCCAGCGCCTCCACGTGCCCGTACATCGGTAGAACACGATGTACAGCCGCAGCTTCCGCCGCCCCCCGGCCGCNTCCCCCGACGC]
consensusID : consensus_10243#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 122 fasta sequence
[ACAGATTTATCTGTAAATTGTTGACATAAAACATTGTTTGGTGTCCAGTTGAACACTAAGTGTGCCATACGGTGTTGATCGAAATNACATACATCNCTTGNTNTAAAAAAAANNAAAAAANA]
[+] EMBL AU058378 [ACAGATTTATCTGTAAATTGTTGACATAAAACATTGTTTGGTGTCCAGTTGAACACTAAGTGTGCCATACGGTGTTGATCGAAATNACATACATCNCTTGNTNTAAAAAAAANNAAAAAANA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10243#1 ------------------------------------------------------------
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 ACAAGCATGTGCATTCCCTTCATTCATGATACAGAAACAAAGTTCTGGATACAGAAACAG 60
consensus_10243#2 ------------------------------------------------------------
consensus_10243#1 ---------TTTTTTTTTTATGGCAAGTGATGTATGTTATGG-GATCAACACCGTATG-G 49
consensus_10243#3 ---------------------------------------------------------A-C 2
consensus_10243#0 AGTTCTGCATAACAAATCTATGGCAAGTGATGTATGTTATTTCGATCAACACCGTATGGC 120
consensus_10243#2 ------------------TTCATGTGCATATNNGGGNGATTGCGTCAAGCGTGTTATG-C 41
consensus_10243#1 ACACTTAGTGTTCAACTG--GACACCAAACAATGTTTTATGTCAA-CAATTTACAGATAA 106
consensus_10243#3 AGATTTATCTGTAAATTGTTGACATAAAACATTGTTTGGTGTC---CAGTTGAACACTAA 59
consensus_10243#0 ACACTTATTGTTCAACTG--GACACCAAACAATGTTTTATGTCAG-CAATTTACAGATAA 177
consensus_10243#2 GCTCCTGGT-GCCGGTGGTGAAGAAAGAACCCGGCGGGGTTCCCGGNGAGTTTNTGTTNT 100
* * * * *** * * * * *
consensus_10243#1 ATCTGTGACGAACAAATACGA-GACGATCTGAGGATCATCAGGGGTGGGGCATTACATTA 165
consensus_10243#3 GT--GTGCCATACG-----GT-GTTGATCGAAATNACAT----------ACATCNC-TTG 100
consensus_10243#0 ATCTGTGACGAACAAATACGACGACGATCTGAGGATCATCAGGCTGTGCACATTAC---- 233
consensus_10243#2 CCCAGAGGGAGCCGGTGGAGTCGAAGAACGCNTTCATTTGCGCGGCCATGGAGCNG--TA 158
* * * * * ** * * *
consensus_10243#1 TTGAAGAAGAAAAAACCAAATAGGGGGGGAAATCAATTGGNGACTGGACGATCGTGTGGA 225
consensus_10243#3 NTNTAAAAAAAANNAAAAAANA-------------------------------------- 122
consensus_10243#0 ATATAGAAGAAGAAA--AACCAATAGGGGGAAATCAATGGCGACTGGACGATCGTGTGGA 291
consensus_10243#2 CTTNGTCGGGAACCCGAACAGCACCCCGTCGGCTTCNTNCAGGTCCGCCGCCGCCGCGAT 218
* * *
consensus_10243#1 GTTTGGACTGACCAGTGGCGTCCGGTGGGAGGGATTTCCAACTTTCTTCTGGGGCTCAAG 285
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 GTTTGGACTGCACAGTGGCGT--------GGGAGGATTCAACTTCTTCT--AGGCTCAAG 341
consensus_10243#2 GACCGGGACGGCGGGGTCCTT-----GGCCGGCGCCTGCATCTTNTCCAGCACGCCCGGC 273
consensus_10243#1 CCTNGGGCAAGCTTTCTTCACTATGGGAGGGCATGTACTTTGCCCTGGTGCTCGGGTAAG 345
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 CCTGGG--CAAGCTTCTTCACTATGG-AGGCCATGTACTT-GCCCTGGTGCTCGGCTAGG 397
consensus_10243#2 GGGAGCGTCTCGGGGACGCGCCGCAGCACCGCNTCCACCCCGTCC-ACCGCCGGGACGCC 332
consensus_10243#1 GCGGAAGCTCCGTCTCGCTTGGGGCTGTCTGGTGC-ATCACCAGCGAAGACGCCAGCGCC 404
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 GCG--AGCTCCGTCTCGCT--GGGCTGTCTGCCGCCATCACCAGCGAAGACGCCAGCGCC 453
consensus_10243#2 CGCCGCCGCCCGCCGCGCCAGCGCCTCCACGTGCCCGTACATCGGTAGAACACGATGTAC 392
consensus_10243#1 ATAGGGGGGTTGGCTCCTCTGATCTCATCCATCTTGAACATGCCT--------------- 449
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 ATAGGGG--CTGCCTCCTCTGATCTCATCCATCTTGAACATGCCTGACCCGAAGGTGTAG 511
consensus_10243#2 AGCCGCAGCTTCCGCCGCCCCCCGGCCGCNTCCCCCGACGC------------------- 433
consensus_10243#1 ------------------------------------------------------------
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 CCAATCGGGACAAAGAGCATTCCATGGTGCACTATCTGGGTGATTGCCGTCCAAGCGGTG 571
consensus_10243#2 ------------------------------------------------------------
consensus_10243#1 ------------------------------------------------------------
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 GTCTCCTGGCCGCCTCCCTGCGTGCCGGTGCTGACGAAGAACCCGGCGGGCTTCCCGGCG 631
consensus_10243#2 ------------------------------------------------------------
consensus_10243#1 ------------------------------------------------------------
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 AGCTTCTGCTTCTCCCAGAGGGAGCCGGTGGAGTCGAAGAACGCCTTCATCTGCGCGGCC 691
consensus_10243#2 ------------------------------------------------------------
consensus_10243#1 ------------------------------------------------------------
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 ATGGCGCCGTACCTCGTCGGGAACCCGAACAGCACCCCGTCGGCCTCCTCCAGGTCCGCC 751
consensus_10243#2 ------------------------------------------------------------
consensus_10243#1 ------------------------------------------------------------
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 GCCGCCGCGATGACCGGGACGGCGGGGTCCTTGGCCGGCGCCTGCATCTTCTCCAGCACG 811
consensus_10243#2 ------------------------------------------------------------
consensus_10243#1 ------------------------------------------------------------
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 CCCGGCGGGAGCGTCTCGGGGACGCGCCGCAGCACCGCCTCCACCCCGTCCACCGCCGCG 871
consensus_10243#2 ------------------------------------------------------------
consensus_10243#1 ------------------------------------------------------------
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 ACGCCCGCCGCCGCCCGCCGCGCCAGCGCCTCCACGTGCCCGTACATCGAGTAGAACACG 931
consensus_10243#2 ------------------------------------------------------------
consensus_10243#1 ------------------------------------------------------------
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 ATGTACAGCCGCAGCCTCCGCCGCCCCCCGGCCGCCTCCCCCGACGCCTCCGCCTCGGGG 991
consensus_10243#2 ------------------------------------------------------------
consensus_10243#1 ------------------------------------------------------------
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 GCGTCGCGCGGCGCCGACGACGACGACGGCGCGCCGGCGACGGTGCTGGCCGGCGCTGCC 1051
consensus_10243#2 ------------------------------------------------------------
consensus_10243#1 ------------------------------------------------------------
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 GCTTCTTGCTGGGGACGCAGCCGCCGCCCTTCCCCATCACCGGCCGGTCAAACCCAACTC 1111
consensus_10243#2 ------------------------------------------------------------
consensus_10243#1 ------------------------------------------------------------
consensus_10243#3 ------------------------------------------------------------
consensus_10243#0 CGCCGCGGCGGCGCCCCCCAAGAAAGCAAGCTCGGGAGTTGGGCCGNCGCGCTGCTCGTG 1171
consensus_10243#2 ------------------------------------------------------------
consensus_10243#1 ---------------------------
consensus_10243#3 ---------------------------
consensus_10243#0 CTCCGTCGCGTCTCGGGGAGGTGGAGT 1198
consensus_10243#2 ---------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||