cluster # 10246

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Oryza sativa
cluster # 10246 cluster # 10246 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10246#0 length = 781 sequences # 6

consensus_10246#1 length = 131 sequences # 1

consensusID : consensus_10246#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 781
fasta sequence

                              [TCTTTCTCTCTACCTTATCTCTTCTCCTCTTCTCTCCGGCTTCCCACCGGTCTCCTCCCCGGCTGGCTTCCCCTCCTCCTTCCCCCTCCCCTGGGCGAGGCGGTGGCTGGGCGCGGCGGCGGCCTGGGCGACGGCTGGGAGTGGGCCGACGACGACGAACAGGCCAGAAGGCGAGCCGGCCACGGCAGCGAGTGGGCGAGGCGGCGGCTAGGCGAGCCGGGCGCTGGGAAAAACACAGAGAAACATGTAGAACAAAGGGCTGCAAGATTCTTGCCAACTACAGTGAAGGCAGGGATGTGGCGGCTGTTAACACTAATCATGACTTGTACATGTATTAGAATATTTTGCATGTGTTGTCGTGCATAGATCGGTAAAGGTTCGCGCGTGTGTTGCATGTAGGAGTTAATTTAATTAGTGGAATAACTAGATGCATGGAATTAGCAAGTAGTTAGTTAGTTGTATGCGTGATTAGGTGGTCAGGCTGGTAGACCGCTTCATGTGGATCATGGAGTTAGTGAGTCTGTTGTGCATGAGTTCGTGGCTCGTGCAGGCCGTGCGTACGTGCGCGTATGACCTGGGGAGTAGGCGCTCCCGTATGTGCATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTTACGTGTGTGTTAATTAACAAAGAAAAGAGGAAAGGCATTAGTT---GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK106751             [TCTTTCTCTCTACCTTATCTCTTCTCCTCTTCTCTCCGGCTTCCCACCGGTCTCCTCCCCGGCTGGCTTCCCCTCCTCCTTCCCCCTCCCCTGGGCGAGGCGGTGGCTGGGCGCGGCGGCGGCCTGGGCGACGGCTGGGAGTGGGCCGACGACGACGAACAGGCCAGAAGGCGAGCCGGCCACGGCAGCGAGTGGGCGAGGCGGCGGCTAGGCGAGCCGGGCGCTGGGAAAAACACAGAGAAACATGTAGAACAAAGGGCTGCAAGATTCCTGCCAACTACAGTGAAGGCAGGGATGTGGCGGCTGTTAACACTAATCATGACTTGTACATGTATTAGAATATTTTGCATGTGTTGTCGTGCATAGATCGGTAAAGGTTCGCGCGTGTGTTGCATGTAGGAGTTAATTTAATTAGTGGAATAACTAGATGCATGGAATTAGCAAGTAGTTAGTTAGTTGTATGCGTGATTAGGTGGTCAGGCTGGTAGACCGCTTCATGTGGATCATGGAGTTAGTGAGTCTGTTGTGCATGAGTTCGTGGCTCGTGCAGGCCGTGCGTACGTGCGCGTATGACCTGGGGAGTAGGCGCTCCCGTATGTGCATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTTACGTGTGTGTTAATTAACAAAGAAAAGAGGAAAGGCAT                                                                                                  ]
[+] EMBL AU101408             [                  CTCTTCTCCTCTTCTCTCCGGCTTCCCACCGGTCTCCTCCCCGGCTGGCTTCCCCTCCTCCTTCCCCCTCCCCTGGGCGAGGCGGTGGCTGGGCGCGGCGGCGGCCTGGGCGACGGCTGGGAGTGGGCCGACGACGACGAACAGGCCAGAAGGCGAGCCGGCCACGGCAGCGAGTGGGCGAGGCGGCGGCTAGGCGAGCCGGGCGCTGGGAAAAACACAGAGAAACATGTAGAACAAAGGGCTGCAAGATTCTTGCCAACTACAGTGAAGGCAGGGATGTGGCGGCTGTTAACACTAATCATGACTTGTACATGTATTAGAATATTTTGCATGTGTTGTCGTGCATAGATCGGTAAAGGTTCGCGCGTGTGTTGCATGTAGGAGTTAATTTAATTAGTGGAATAACTAGATGCATGGAATTAGCAAGTAGTTAGTTAGTTGTATGCGTGATTAGGTGGTCAGGCTGGTAGACCGCTTCATGTGGATCATGGAGT                                                                                                                                                                                                                                                                                ]
[+] EMBL AU197785             [                                                                  CTTCCCCTCCTCCTTCCCCCTCCCCTGGGCGAGGCGGTGGCTGGGCGCGGCGGCGGCCTGGGCGACGGCTGGGAGTGGGCCGACGACGACGAACAGGCCAGAAGGCGAGCCGGCCACGGCAGCGAGTGGGCGAGGCGGCGGCTAGGCGAGCCGGGCGCTGGGAAAAACACAGAGAAACATGTAGAACAAAGGGCTGCAAGATTCTTGCCAACTACAGTGAAGGCAGGGATGTGGCGGCTGTTAACACTAATCATGACTTGTACATGTATTAGAATATTTTGCATGTGTTGTCGTGCATAGATCGGTAAAGGTTCGCGCGTGTGTTGCATGTAGGAGTTAATTTAATTAGTGGAATAACTAGATGCATGGAATTAGCAAGTAGTTAGTTAGTTGTATGCGTGATTAGGTGGTC                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU101409             [                                                                                                                                                                                                                                        ACACAGAGAAACATGTAGANCAAAGGGCTGCAAGATTCTTGCCAACTACAGTGAAGGCAGGGATGTGGCGGCTGTTAACACTAATCATGACTTGTACATGTATTAGAATATTTTGCATGTGTTGTCGTGCATAGATCGGTAAAGGTTCGCGCGTGTGTTGCATGTAGGAGTTAATTTAATTAGTGGAATAACTAGATGCATGGAATTAGCAAGTAGTTAGTTAGTTGTATGCGTGATTAGGTGGTCAGGCTGGTAGACCGCTTCATGTGGATCATGGAGTTAGTGAGTCTGTTGTGCATGAGTTCGTGGCTCGTGCAGGCCGTGCGTACGTGCGCGTATGACCTGCGGAGTAGGCGCTCCCGTATGTGCATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTTACGTGTGTGTTAATTAACAAAGAAAAGAGGAAAGGCATTAGTT   GCAAAAA                                                                                   ]
[+] EMBL AU197786             [                                                                                                                                                                                                                                                 AACATGTAGAACAAAGGGCTGCAAGATTCTTGCCAACTACAGTGAAGGCAGGGATGTGGCGGCTGTTAACACTAATCATGACTTGTACATGTATTAGAATATTTTGCATGTGTTGTCGTGCATAGATCGGTAAAGGTTCGCGCGTGTGTTGCATGTAGGAGTTAATTTAATTAGTGGAATAACTAGATGCATGGAATTAGCAAGTAGTTAGTTAGTTGTATGCGTGATTAGGTGGTCAGGCTGGTAGACCGCTTCATGTGGATCATGGAGTTAGTGAGTCTGTTGTGCATGAGTTCGTGGCTCGTGCAGGCCGTGCGTACGTGCGCGTATGACCTGGGGAGTAGGCGCTCCCGTATGTGCATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTTACGTGTGTGTTAATTAACAAAaa                                                                                                                 ]
[+] EMBL CF320829             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TATGTGCATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTTACGTGTGTGTTAATTAACAAAGAAAAGAGGAAAGGCATTAGTTGCCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10246#0
TCTTTCTCTCTACCTTATCTCTTCTCCTCTTCTCTCCGGCTTCCCACCGGTCTCCTCCCC
GGCTGGCTTCCCCTCCTCCTTCCCCCTCCCCTGGGCGAGGCGGTGGCTGGGCGCGGCGGC
GGCCTGGGCGACGGCTGGGAGTGGGCCGACGACGACGAACAGGCCAGAAGGCGAGCCGGC
CACGGCAGCGAGTGGGCGAGGCGGCGGCTAGGCGAGCCGGGCGCTGGGAAAAACACAGAG
AAACATGTAGAACAAAGGGCTGCAAGATTCTTGCCAACTACAGTGAAGGCAGGGATGTGG
CGGCTGTTAACACTAATCATGACTTGTACATGTATTAGAATATTTTGCATGTGTTGTCGT
GCATAGATCGGTAAAGGTTCGCGCGTGTGTTGCATGTAGGAGTTAATTTAATTAGTGGAA
TAACTAGATGCATGGAATTAGCAAGTAGTTAGTTAGTTGTATGCGTGATTAGGTGGTCAG
GCTGGTAGACCGCTTCATGTGGATCATGGAGTTAGTGAGTCTGTTGTGCATGAGTTCGTG
GCTCGTGCAGGCCGTGCGTACGTGCGCGTATGACCTGGGGAGTAGGCGCTCCCGTATGTG
CATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTTACGTGTGTGTTA
ATTAACAAAGAAAAGAGGAAAGGCATTAGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

consensusID : consensus_10246#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 131
fasta sequence

                              [GAGTAGGCGCTCCCGTATGTGCATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF317306             [GAGTAGGCGCTCCCGTATGTGCATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10246#1
GAGTAGGCGCTCCCGTATGTGCATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAAT
CATCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10246#0      TCTTTCTCTCTACCTTATCTCTTCTCCTCTTCTCTCCGGCTTCCCACCGGTCTCCTCCCC 60
consensus_10246#1      ------------------------------------------------------------
                                                                                   

consensus_10246#0      GGCTGGCTTCCCCTCCTCCTTCCCCCTCCCCTGGGCGAGGCGGTGGCTGGGCGCGGCGGC 120
consensus_10246#1      ------------------------------------------------------------
                                                                                   

consensus_10246#0      GGCCTGGGCGACGGCTGGGAGTGGGCCGACGACGACGAACAGGCCAGAAGGCGAGCCGGC 180
consensus_10246#1      ------------------------------------------------------------
                                                                                   

consensus_10246#0      CACGGCAGCGAGTGGGCGAGGCGGCGGCTAGGCGAGCCGGGCGCTGGGAAAAACACAGAG 240
consensus_10246#1      ------------------------------------------------------------
                                                                                   

consensus_10246#0      AAACATGTAGAACAAAGGGCTGCAAGATTCTTGCCAACTACAGTGAAGGCAGGGATGTGG 300
consensus_10246#1      ------------------------------------------------------------
                                                                                   

consensus_10246#0      CGGCTGTTAACACTAATCATGACTTGTACATGTATTAGAATATTTTGCATGTGTTGTCGT 360
consensus_10246#1      ------------------------------------------------------------
                                                                                   

consensus_10246#0      GCATAGATCGGTAAAGGTTCGCGCGTGTGTTGCATGTAGGAGTTAATTTAATTAGTGGAA 420
consensus_10246#1      ------------------------------------------------------------
                                                                                   

consensus_10246#0      TAACTAGATGCATGGAATTAGCAAGTAGTTAGTTAGTTGTATGCGTGATTAGGTGGTCAG 480
consensus_10246#1      ------------------------------------------------------------
                                                                                   

consensus_10246#0      GCTGGTAGACCGCTTCATGTGGATCATGGAGTTAGTGAGTCTGTTGTGCATGAGTTCGTG 540
consensus_10246#1      ------------------------------------------------------------
                                                                                   

consensus_10246#0      GCTCGTGCAGGCCGTGCGTACGTGCGCGTATGACCTGGGGAGTAGGCGCTCCCGTATGTG 600
consensus_10246#1      ---------------------------------------GAGTAGGCGCTCCCGTATGTG 21
                                                              *********************

consensus_10246#0      CATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTTTACGTGTGTGTTA 660
consensus_10246#1      CATGTGAGGAAGACTAGCTAGCTATATAAGCTATGTAATCATCTGTT------------- 68
                       ***********************************************             

consensus_10246#0      ATTAACAAAGAAAAGAGGAAAGGCATTAGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAA 720
consensus_10246#1      ---AAAAAAAAAAAAAAAAAA------------AAAAAAAAAAAAAAAAAAAAAAAAAAA 113
                          ** *** **** *  ***            ***************************

consensus_10246#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 780
consensus_10246#1      AAAAAAAAAAAAAAAAAA------------------------------------------ 131
                       ******************                                          

consensus_10246#0      A 781
consensus_10246#1      -