These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 677 fasta sequence [TCCCCTCTCCATCAGTCATTCCAAGGTCAACCCAAACCCTACCTGGTCCGCGAGTGCGGTGGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTTCAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGGCCACAAGCATGGGCCAAACTTGAACGGTTTGTTTGGGAGGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATCTGGCGACAAGATAGTG-CCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTCCTAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGGGCAGCTGCGAGCTATTCTTTGGCTGTGTTCTTTGACGTGGGTTGGGAACTAATCCCATGCATAAACAGAGCGACAGATAAATATATTTTTTAAATAAGATAAATGATCAAA] [+] EMBL AK121662 [TCCCCTCTCCATCAGTCATTCCAAGGTCAACCCAAACCCTACCTGGTCCGCGAGTGCGGTGGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTTCAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGGCCACAAGCATGGGCCAAACTTGAACGGTTTGTTTGGGAGGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATCTGGCGACAAGATAGTG CCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTCCTAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGGGCAGCTGCGAGCTATTCTTTGGCTGTGTTCTTTGACGTGGGTTGGGAACTAATCCCATGCATAAACAGAGCGACAGATAAATATATTTTTTAAATAAGATAAATGATCAAA] [+] EMBL AU058182 [ CTGGTCCGCGAGTGCGATGGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTTCAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGG CACAAGCATGGGCCAAACTTGAACGGTTTGTTTGGGAGGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATCTGGCGACAAGATAGTG CCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGNGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATACCTGAAG ACGCCACAGCATGAGAGTNCCTGCTG CATCNTCCTAAGATGAAGAGAgc ] [+] EMBL AU095003 [ CTGGTTTCTCTTACCCATCTGGCGACAAGATAGTGCCCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTCCTAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGGGCAGCTGCGAGCTATTCTTTGGCTGTGTTCTTTGACGTGGGTTGGGAACTAATCCCATGCATAAACAGAGCGACAGATAAATATATTTTTTAAATAAGATAAAaa ] consensusID : consensus_10249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 597 fasta sequence [ACACTGACTGGACTGAAGGAGTAGAAAACTTGGTCCGCGAGTGCGGTGGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTTCAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGGCCACAAGCATGGGCCAAACTTGAACGGTTTGTTTGGGAGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATCTGGCGACAAGATAGTGCCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTCCTAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGGGCAGCTGCGAGCTATTCAAAANAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF316202 [ACACTGACTGGACTGAAGGAGTAGAAAACTTGGTCCGCGAGTGCGGTGGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTTCAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGGCCACAAGCATGGGCCAAACTTGAACGGTTTGTTTGGGAGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATCTGGCGACAAGATAGTGCCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTCCTAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGGGCAGCTGCGAGCTATTCAAAANAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK060676 [ TGCTTACTCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGTGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTCCTAAGATGAAGAGAAGCTTATTGCCCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGGGCA ] consensusID : consensus_10249#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [TTCAATGGATTGAAGCACCCACAGGCCCGTGTTGATTTCATGGCATCCCTGAAGAACGCCCCAGCATGAGAGTCCCTGCTGCCATTTTCTTAAAATAAAGAAAAGCTTATTGTTGGTACCCTCATACTGACTTTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACGTGTGTTGTAAATTTGTAATAATAACCAGGGCCCTCGTGGAAAAGACGATGTGCAGTTCATCCACTTGGGCAGTTGCGAGTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF316201 [TTCAATGGATTGAAGCACCCACAGGCCCGTGTTGATTTCATGGCATCCCTGAAGAACGCCCCAGCATGAGAGTCCCTGCTGCCATTTTCTTAAAATAAAGAAAAGCTTATTGTTGGTACCCTCATACTGACTTTTTGTAACTTGTAAGGTGAACTTTGCAACAAAACGTGTGTTGTAAATTTGTAATAATAACCAGGGCCCTCGTGGAAAAGACGATGTGCAGTTCATCCACTTGGGCAGTTGCGAGTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10249#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 134 fasta sequence [TAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGAGCAGCTGCGAGCTATTCTTTGGCTGTTTTCTTTGACCTGGGTTGGGAACTAATCCCATGCATAAACGGAAAAAAAAAAAAA] [+] EMBL AA750479 [TAATAATAAGCAGTGGCCTCGTGGAAGAGACGATGTGCAGCTCATCCACTTGAGCAGCTGCGAGCTATTCTTTGGCTGTTTTCTTTGACCTGGGTTGGGAACTAATCCCATGCATAAACGGAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10249#0 TCCCCTCTCCATCAGTCATTCCAAGGTCAACCCAAACCCTACCTGGTCCGCGAGTGCGGT 60 consensus_10249#3 ------------------------------------------------------------ consensus_10249#1 -------------ACACTGACTGGACTGAAGGAGTAGAAAACTTGGTCCGCGAGTGCGGT 47 consensus_10249#2 ------------------------------------------------------------ consensus_10249#0 GGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTT 120 consensus_10249#3 ------------------------------------------------------------ consensus_10249#1 GGCGATGGCGACATTCTCCGATGCGCCGCCCGGGGACGCGGCGGCCGGCGAGAAGATCTT 107 consensus_10249#2 ------------------------------------------------------------ consensus_10249#0 CAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGGCCACAAGCATGGGCC 180 consensus_10249#3 ------------------------------------------------------------ consensus_10249#1 CAGGACCAAGTGCGCGTACTGCCATGCCGTCGACAAGGCCGCCGGCCACAAGCATGGGCC 167 consensus_10249#2 ------------------------------------------------------------ consensus_10249#0 AAACTTGAACGGTTTGTTTGGGAGGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATC 240 consensus_10249#3 ------------------------------------------------------------ consensus_10249#1 AAACTTGAACGGTTTGTTTGGGAGCAATCTGGTACAGCTCCTGGTTTCTCTTACCCATCT 227 consensus_10249#2 ------------------------------------------------------------ consensus_10249#0 TGGCGACAAGATAGTGCCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTAC 300 consensus_10249#3 ------------------------------------------------------------ consensus_10249#1 GGCGACAAGATAGTGCCTGTGATTTGGGAAGAGAACACTTTGTATGACTACCTGCTTACT 287 consensus_10249#2 ------------------------------------------------------------ consensus_10249#0 TCCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCG 360 consensus_10249#3 ------------------------------------------------------------ consensus_10249#1 CCTAAGAAGTACACTCCTGCCAAGATGGGGTTCAATGGACTGAAGCAGCCACAGGACCGT 347 consensus_10249#2 ------------------------------TTCAATGGATTGAAGCACCCACAGGCCCGT 30 consensus_10249#0 TGCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTC 420 consensus_10249#3 ------------------------------------------------------------ consensus_10249#1 GCTGATCTCATCGCATACCTGAAGAACGCCACAGCATGAGAGTCCCTGCTGCCATCTTCC 407 consensus_10249#2 GTTGATTTCATGGCATCCCTGAAGAACGCCCCAGCATGAGAGTCCCTGCTGCCATTTTCT 90 consensus_10249#0 CTAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGG 480 consensus_10249#3 ------------------------------------------------------------ consensus_10249#1 TAAGATGAAGAGAAGCTTATTGCTCGTAGCCTCATACTGACTCTTTGTAACTTGTAAGGT 467 consensus_10249#2 TAAAATAAAGAAAAGCTTATTGTTGGTACCCTCATACTGACTTTTTGTAACTTGTAAGGT 150 consensus_10249#0 TGAACTTTGCAACAAAACTGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAG 540 consensus_10249#3 ---------------------------------TAATAATAAGCAGTGGCCTCGTGGAAG 27 consensus_10249#1 GAACTTTGCAACAAAAC-TGTGTTGTAAATTTGTAATAATAAGCAGTGGCCTCGTGGAAG 526 consensus_10249#2 GAACTTTGCAACAAAACGTGTGTTGTAAATTTGTAATAATAACCAGGGCCCTCGTGGAAA 210 ********* *** * ********** consensus_10249#0 AGACGATGTGCAGCTCATCCACTTGGGCAGCTGCGAGCTATTCTTTGGCTGTGTTCTTTG 600 consensus_10249#3 AGACGATGTGCAGCTCATCCACTTGAGCAGCTGCGAGCTATTCTTTGGCTGTTTTCTTTG 87 consensus_10249#1 AGACGATGTGCAGCTCATCCACTTGGGCAGCTGCGAGCTATTC----------------- 569 consensus_10249#2 AGACGATGTGCAGTTCATCCACTTGGGCAGTTGCGAGTTATTC----------------- 253 ************* *********** **** ****** ***** consensus_10249#0 ACGTGGGTTGGGAACTAATCCCATGCATAAACAGAGCGACAGATAAATATATTTTTTAAA 660 consensus_10249#3 ACCTGGGTTGGGAACTAATCCCATGCATAAACGGAAAAAAAAAAAAA------------- 134 consensus_10249#1 ----------AAAANAAA--------AAAAAAAAAAAAAAAAAAAA-------------- 597 consensus_10249#2 ----------AAAAAAAA--------AAAAAAAAAAAAAAAAAAAAA------------- 282 ** ** * *** * * * * ** consensus_10249#0 TAAGATAAATGATCAAA 677 consensus_10249#3 ----------------- consensus_10249#1 ----------------- consensus_10249#2 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||