These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1236 fasta sequence [AGCAGGAATCCAATCCGAATCCACCATCAGCTCTCCTATCACATTCCCTGCATCCGTCTTCGAGCGAGCTATGCGGCAGGAGGCCACCTGCAGCCTTGTGCTGACCCAGGACGCCCAACACCGGAAGAACCAGCCACCGCTGGCTGAGGAGGACGACGATAGGGATCATACCGACGATGCCATGCCGCCGCCCTGCTCGATCTTGCTCCGCCAGGAGG-AGGGCGAGGCGACGGCGGCGGCGGCGGGGGAANGGCTGCTGGTGCCGCCGCTCAACTTCGCCATGGTGGATCATGGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTCCGTCCTGTGCCTCTGCCCGGAGCCGTACCCGGAGGCGAACCAGGAGTTCCTCCGCGCCCACGGGATCAGGCTGTTCCAGTTCGGAATCGACGGTTCCAAGGAGCCCTTTGTGAACATACCTGAAGATAGAATCCGTGAGGCTCTAAAAGTTGTGCTAGATGTGGCAAATCACCCGGTGCTTATTCACTGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAG-CAAGAGTATCTGACCT-AAGGTTTATGGAACTATTTGATATCTCTAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCAATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTAAGAAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACATGTAGTCGCAAGTTTAACCTTATCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATTAGTTCAGTGTTTTTCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCATTGTTGTTTCTGCGTTAGCAGTACCAGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAATGTGTGTAATTGTTCAGTGTTTTAAAGAAGATTA] [+] EMBL AU078023 [AGCAGGAATCCAATCCGAATCCACCATCAGCTCTCCTATCACATTCCCTGCATCCGTCTTCGAGCGAGCTATGCGGCAGGAGGCCACCTGCAGCCTTGTGCTGACCCAGGACGCCCAACACCGGAAGAACCAGCCACCGCTGGCTGAGGAGGACGACGATAGGGATCATACCGACGATGCCATGCCGCCGCCCTGCTCGATCTTGCTCCGCCAGGAGG AGGGCGAGGCGACGGCGGCGGCGGCGGGGGAANGGCTGCTGGTGCCGCCGCTCAACTTCGCCATGGTGGATCATNGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTC ] [+] EMBL OSS13304A [ GTCTTCGAGCGAGCTATGCGGCAGGAGGCCACCTGCAGCCTTGTGCTGACCCAGGACGCCCAACACCGGAAGAACCAGCCACCGCTGGCTGAGGAGGACGACGATAGGGATCATACCGACGATGCCATGCCGCCGCCCTGCTCGATCTTGCTCCGCCAGGAGGAAGGGCGAGGCGACGGAGGCGGCGGCGGGGNAGGGGCTGCTGGTGCCGCCGNTCAACTTCGCCATGGTGGATCATGG ] [+] EMBL AK121831 [ GCCGCCGCTCAACTTCGCCATGGTGGATCATGGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTCCGTCCTGTGCCTCTGCCCGGAGCCGTACCCGGAGGCGAACCAGGAGTTCCTCCGCGCCCACGGGATCAGGCTGTTCCAGTTCGGAATCGACGGTTCCAAGGAGCCCTTTGTGAACATACCTGAAGATAGAATCCGTGAGGCTCTAAAAGTTGTGCTAGATGTGGCAAATCACCCGGTGCTTATTCACTGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAG CAAGAGTATCTGACCT AAGGTTTATGGAACTATTTGATATCTCTAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCAATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTAAGAAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACATGTAGTCGCAAGTTTAACCTTATCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGG TCGGTTGCCAATGCAGTTCACTGTATTAGTTCAGTGTTTTTCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCATTGTTGTTTCTGCGTTAGCAGTACCAGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAATGTGTGTAATTGTTCAGTGTTTTAAAGAA ] [+] EMBL BP184694 [ GCCGCCGCTCAACTTCGCCATGGTGGATCATGGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTCCGTCCTGTGCCTCTGCCCGGAGCCGTACCCGGAGGCGAACCAGGAGTTCCTCCGCGCCCACGGGATCAGGCTGTTCCAGTTCGGAATCGACGGTTCCAAGGAGCCCTTTGTGAACATACCTGAAGATAGAATCCGTGAGGCTCTAAAAGTTGTGCTAGATGTGGCAAATCACCCGGTGCTTATTCACTGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTC ATATTTGATGAATATCAGCGCTTTGCT ] [+] EMBL CA767345 [ CTAACTTCAATATTTGATGAATATAAGCGCTTTGCTGCTGCCAAAG CAAGAGTATCTGACCT AAGGTTTATGGAACTATTTGATATCTCTAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCAATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTAAGAAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACATGTAGTCGCAAGTTTAACCTTACCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATGAGTCCAGTGTTTTTCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCATTGTTGTTTCTGCGTTAGCAGTACCAGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATCATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAATGTGTGTAATTGGTCAGTGNTTTAAAGAAGATTA] [+] EMBL AU078024 [ CAANATTTGATGAATATCAGCGCTTTGNTGCTGCCAAAGCCAAGNGTATCTGACCTAAAGGTTTATGGANCTATTTGATATCTCTAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAANCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCAATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTAAGAAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACATGTAGTCGCAAGTTTAACCTTATCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATTAGTTCAGTGTTTTTCAANCGAATAAGAGGGATGCATCGGGAGCTATACCATTGTTGTTTCTGCGTTAGCAGTACCAGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGG ] consensusID : consensus_10257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [AGTTTGTGCTAGATGTGCAATCACCCGGTGCTTATTCACATGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAGCAAGAGTATCTGACCTAAGGTTTATGGAACTATTTGATATCTCTGAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCNATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATGAGTTCAGTGTTTTTCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCACTTGTTGTTTCTGCGTTACAGTACCAGTATGTATTTTTTTGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAAA] [+] EMBL BQ907652 [AGTTTGTGCTAGATGTGCAATCACCCGGTGCTTATTCACATGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAGCAAGAGTATCTGACCTAAGGTTTATGGAACTATTTGATATCTCTGAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCNATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATGAGTTCAGTGTTTTTCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCACTTGTTGTTTCTGCGTTACAGTACCAGTATGTATTTTTTTGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10257#0 AGCAGGAATCCAATCCGAATCCACCATCAGCTCTCCTATCACATTCCCTGCATCCGTCTT 60 consensus_10257#1 ------------------------------------------------------------ consensus_10257#0 CGAGCGAGCTATGCGGCAGGAGGCCACCTGCAGCCTTGTGCTGACCCAGGACGCCCAACA 120 consensus_10257#1 ------------------------------------------------------------ consensus_10257#0 CCGGAAGAACCAGCCACCGCTGGCTGAGGAGGACGACGATAGGGATCATACCGACGATGC 180 consensus_10257#1 ------------------------------------------------------------ consensus_10257#0 CATGCCGCCGCCCTGCTCGATCTTGCTCCGCCAGGAGGAGGGCGAGGCGACGGCGGCGGC 240 consensus_10257#1 ------------------------------------------------------------ consensus_10257#0 GGCGGGGGAANGGCTGCTGGTGCCGCCGCTCAACTTCGCCATGGTGGATCATGGCGTATA 300 consensus_10257#1 ------------------------------------------------------------ consensus_10257#0 CCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTC 360 consensus_10257#1 ------------------------------------------------------------ consensus_10257#0 CGTCCTGTGCCTCTGCCCGGAGCCGTACCCGGAGGCGAACCAGGAGTTCCTCCGCGCCCA 420 consensus_10257#1 ------------------------------------------------------------ consensus_10257#0 CGGGATCAGGCTGTTCCAGTTCGGAATCGACGGTTCCAAGGAGCCCTTTGTGAACATACC 480 consensus_10257#1 ------------------------------------------------------------ consensus_10257#0 TGAAGATAGAATCCGTGAGGCTCTAAAAGTTGTGCTAGATGTGGCAAATCACCCGGTGCT 540 consensus_10257#1 --------------------------AGTTTGTGCTAGATGTG--CAATCACCCGGTGCT 32 * ************** ************** consensus_10257#0 TATTCAC-TGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGGTTGGTTGCTTGAGGAAAT 599 consensus_10257#1 TATTCACATGCAAGCGTGGAAAGCATCGAACTGGCTGTGTG-TTGGTTGCTTGAGGAAAT 91 ******* ********************************* ****************** consensus_10257#0 TGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAG 659 consensus_10257#1 TGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAG 151 ************************************************************ consensus_10257#0 CAAGAGTATCTGACCTAAGGTTTATGGAACTATTTGATATCTCT-AGTTTAAAGCATTTA 718 consensus_10257#1 CAAGAGTATCTGACCTAAGGTTTATGGAACTATTTGATATCTCTGAGTTTAAAGCATTTA 211 ******************************************** *************** consensus_10257#0 CCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTG 778 consensus_10257#1 CCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTG 271 ************************************************************ consensus_10257#0 GCAATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTA 838 consensus_10257#1 GCNATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGT- 330 ** ******************************************************** consensus_10257#0 AGAAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACA 898 consensus_10257#1 ------------------------------------------------------------ consensus_10257#0 TGTAGTCGCAAGTTTAACCTTATCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGT 958 consensus_10257#1 -----------------------------------------CCCGAGTTGTAGTTGATGT 349 ******************* consensus_10257#0 TAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATTAGTTCAGTGTTTT 1018 consensus_10257#1 TAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATGAGTTCAGTGTTTT 409 ********************************************** ************* consensus_10257#0 TCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCA-TTGTTGTTTCTGCGTTAGCAGT 1077 consensus_10257#1 TCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCACTTGTTGTTTCTGCGTTA-CAGT 468 ************************************* ***************** **** consensus_10257#0 ACCAGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCT 1137 consensus_10257#1 ACCAGTATGTATTTTTTTG-CAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCT 527 ******************* **************************************** consensus_10257#0 GTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGA 1197 consensus_10257#1 GTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGA 587 ************************************************************ consensus_10257#0 CTGAATGTGTGTAATTGTTCAGTGTTTTAAAGAAGATTA 1236 consensus_10257#1 CTGAAA--------------------------------- 593 ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||