Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10257 cluster # 10257       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10257#0 length = 1236 sequences # 6  
consensus_10257#1 length = 593 sequences # 1  

consensusID : consensus_10257#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1236
fasta sequence
                              [AGCAGGAATCCAATCCGAATCCACCATCAGCTCTCCTATCACATTCCCTGCATCCGTCTTCGAGCGAGCTATGCGGCAGGAGGCCACCTGCAGCCTTGTGCTGACCCAGGACGCCCAACACCGGAAGAACCAGCCACCGCTGGCTGAGGAGGACGACGATAGGGATCATACCGACGATGCCATGCCGCCGCCCTGCTCGATCTTGCTCCGCCAGGAGG-AGGGCGAGGCGACGGCGGCGGCGGCGGGGGAANGGCTGCTGGTGCCGCCGCTCAACTTCGCCATGGTGGATCATGGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTCCGTCCTGTGCCTCTGCCCGGAGCCGTACCCGGAGGCGAACCAGGAGTTCCTCCGCGCCCACGGGATCAGGCTGTTCCAGTTCGGAATCGACGGTTCCAAGGAGCCCTTTGTGAACATACCTGAAGATAGAATCCGTGAGGCTCTAAAAGTTGTGCTAGATGTGGCAAATCACCCGGTGCTTATTCACTGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAG-CAAGAGTATCTGACCT-AAGGTTTATGGAACTATTTGATATCTCTAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCAATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTAAGAAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACATGTAGTCGCAAGTTTAACCTTATCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATTAGTTCAGTGTTTTTCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCATTGTTGTTTCTGCGTTAGCAGTACCAGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAATGTGTGTAATTGTTCAGTGTTTTAAAGAAGATTA]

[+] EMBL AU078023             [AGCAGGAATCCAATCCGAATCCACCATCAGCTCTCCTATCACATTCCCTGCATCCGTCTTCGAGCGAGCTATGCGGCAGGAGGCCACCTGCAGCCTTGTGCTGACCCAGGACGCCCAACACCGGAAGAACCAGCCACCGCTGGCTGAGGAGGACGACGATAGGGATCATACCGACGATGCCATGCCGCCGCCCTGCTCGATCTTGCTCCGCCAGGAGG AGGGCGAGGCGACGGCGGCGGCGGCGGGGGAANGGCTGCTGGTGCCGCCGCTCAACTTCGCCATGGTGGATCATNGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSS13304A            [                                                       GTCTTCGAGCGAGCTATGCGGCAGGAGGCCACCTGCAGCCTTGTGCTGACCCAGGACGCCCAACACCGGAAGAACCAGCCACCGCTGGCTGAGGAGGACGACGATAGGGATCATACCGACGATGCCATGCCGCCGCCCTGCTCGATCTTGCTCCGCCAGGAGGAAGGGCGAGGCGACGGAGGCGGCGGCGGGGNAGGGGCTGCTGGTGCCGCCGNTCAACTTCGCCATGGTGGATCATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK121831             [                                                                                                                                                                                                                                                                      GCCGCCGCTCAACTTCGCCATGGTGGATCATGGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTCCGTCCTGTGCCTCTGCCCGGAGCCGTACCCGGAGGCGAACCAGGAGTTCCTCCGCGCCCACGGGATCAGGCTGTTCCAGTTCGGAATCGACGGTTCCAAGGAGCCCTTTGTGAACATACCTGAAGATAGAATCCGTGAGGCTCTAAAAGTTGTGCTAGATGTGGCAAATCACCCGGTGCTTATTCACTGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAG CAAGAGTATCTGACCT AAGGTTTATGGAACTATTTGATATCTCTAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCAATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTAAGAAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACATGTAGTCGCAAGTTTAACCTTATCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGG TCGGTTGCCAATGCAGTTCACTGTATTAGTTCAGTGTTTTTCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCATTGTTGTTTCTGCGTTAGCAGTACCAGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAATGTGTGTAATTGTTCAGTGTTTTAAAGAA     ]
[+] EMBL BP184694             [                                                                                                                                                                                                                                                                      GCCGCCGCTCAACTTCGCCATGGTGGATCATGGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTCCGTCCTGTGCCTCTGCCCGGAGCCGTACCCGGAGGCGAACCAGGAGTTCCTCCGCGCCCACGGGATCAGGCTGTTCCAGTTCGGAATCGACGGTTCCAAGGAGCCCTTTGTGAACATACCTGAAGATAGAATCCGTGAGGCTCTAAAAGTTGTGCTAGATGTGGCAAATCACCCGGTGCTTATTCACTGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTC ATATTTGATGAATATCAGCGCTTTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA767345             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTAACTTCAATATTTGATGAATATAAGCGCTTTGCTGCTGCCAAAG CAAGAGTATCTGACCT AAGGTTTATGGAACTATTTGATATCTCTAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCAATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTAAGAAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACATGTAGTCGCAAGTTTAACCTTACCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATGAGTCCAGTGTTTTTCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCATTGTTGTTTCTGCGTTAGCAGTACCAGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATCATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAATGTGTGTAATTGGTCAGTGNTTTAAAGAAGATTA]
[+] EMBL AU078024             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CAANATTTGATGAATATCAGCGCTTTGNTGCTGCCAAAGCCAAGNGTATCTGACCTAAAGGTTTATGGANCTATTTGATATCTCTAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAANCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCAATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTAAGAAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACATGTAGTCGCAAGTTTAACCTTATCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATTAGTTCAGTGTTTTTCAANCGAATAAGAGGGATGCATCGGGAGCTATACCATTGTTGTTTCTGCGTTAGCAGTACCAGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGG                                                                     ]


>consensus_10257#0 AGCAGGAATCCAATCCGAATCCACCATCAGCTCTCCTATCACATTCCCTGCATCCGTCTT CGAGCGAGCTATGCGGCAGGAGGCCACCTGCAGCCTTGTGCTGACCCAGGACGCCCAACA CCGGAAGAACCAGCCACCGCTGGCTGAGGAGGACGACGATAGGGATCATACCGACGATGC CATGCCGCCGCCCTGCTCGATCTTGCTCCGCCAGGAGGAGGGCGAGGCGACGGCGGCGGC GGCGGGGGAANGGCTGCTGGTGCCGCCGCTCAACTTCGCCATGGTGGATCATGGCGTATA CCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTC CGTCCTGTGCCTCTGCCCGGAGCCGTACCCGGAGGCGAACCAGGAGTTCCTCCGCGCCCA CGGGATCAGGCTGTTCCAGTTCGGAATCGACGGTTCCAAGGAGCCCTTTGTGAACATACC TGAAGATAGAATCCGTGAGGCTCTAAAAGTTGTGCTAGATGTGGCAAATCACCCGGTGCT TATTCACTGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGGTTGGTTGCTTGAGGAAATT GCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAGC AAGAGTATCTGACCTAAGGTTTATGGAACTATTTGATATCTCTAGTTTAAAGCATTTACC AGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGC AATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTAAG AAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACATG TAGTCGCAAGTTTAACCTTATCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGTTA AAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATTAGTTCAGTGTTTTTC AAGCGAATAAGAGGGATGCATCGGGAGCTATACCATTGTTGTTTCTGCGTTAGCAGTACC AGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTA TATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTG AATGTGTGTAATTGTTCAGTGTTTTAAAGAAGATTA



consensusID : consensus_10257#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence
                              [AGTTTGTGCTAGATGTGCAATCACCCGGTGCTTATTCACATGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAGCAAGAGTATCTGACCTAAGGTTTATGGAACTATTTGATATCTCTGAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCNATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATGAGTTCAGTGTTTTTCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCACTTGTTGTTTCTGCGTTACAGTACCAGTATGTATTTTTTTGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAAA]

[+] EMBL BQ907652             [AGTTTGTGCTAGATGTGCAATCACCCGGTGCTTATTCACATGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAGCAAGAGTATCTGACCTAAGGTTTATGGAACTATTTGATATCTCTGAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTGGCNATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATGAGTTCAGTGTTTTTCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCACTTGTTGTTTCTGCGTTACAGTACCAGTATGTATTTTTTTGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAAA]


>consensus_10257#1 AGTTTGTGCTAGATGTGCAATCACCCGGTGCTTATTCACATGCAAGCGTGGAAAGCATCG AACTGGCTGTGTGTTGGTTGCTTGAGGAAATTGCAACGCTGGTGCCTAACTTCAATATTT GATGAATATCAGCGCTTTGCTGCTGCCAAAGCAAGAGTATCTGACCTAAGGTTTATGGAA CTATTTGATATCTCTGAGTTTAAAGCATTTACCAGCATCATTCTCATGTTGAGAAAGCAG CACACCCAGAGCAGCCTGTGTGCCAAGATTGGCNATTGTCTCTCGGTGACTCTAGAGACC TGTTTATCATAGTAACAAGACTACCTTGGTCCCGAGTTGTAGTTGATGTTAAAGGGCATA GAAACCGGATCGGTTGCCAATGCAGTTCACTGTATGAGTTCAGTGTTTTTCAAGCGAATA AGAGGGATGCATCGGGAGCTATACCACTTGTTGTTTCTGCGTTACAGTACCAGTATGTAT TTTTTTGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCTGTATATCGAATAG AATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGACTGAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10257#0      AGCAGGAATCCAATCCGAATCCACCATCAGCTCTCCTATCACATTCCCTGCATCCGTCTT 60
consensus_10257#1      ------------------------------------------------------------
                                                                                   

consensus_10257#0      CGAGCGAGCTATGCGGCAGGAGGCCACCTGCAGCCTTGTGCTGACCCAGGACGCCCAACA 120
consensus_10257#1      ------------------------------------------------------------
                                                                                   

consensus_10257#0      CCGGAAGAACCAGCCACCGCTGGCTGAGGAGGACGACGATAGGGATCATACCGACGATGC 180
consensus_10257#1      ------------------------------------------------------------
                                                                                   

consensus_10257#0      CATGCCGCCGCCCTGCTCGATCTTGCTCCGCCAGGAGGAGGGCGAGGCGACGGCGGCGGC 240
consensus_10257#1      ------------------------------------------------------------
                                                                                   

consensus_10257#0      GGCGGGGGAANGGCTGCTGGTGCCGCCGCTCAACTTCGCCATGGTGGATCATGGCGTATA 300
consensus_10257#1      ------------------------------------------------------------
                                                                                   

consensus_10257#0      CCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTC 360
consensus_10257#1      ------------------------------------------------------------
                                                                                   

consensus_10257#0      CGTCCTGTGCCTCTGCCCGGAGCCGTACCCGGAGGCGAACCAGGAGTTCCTCCGCGCCCA 420
consensus_10257#1      ------------------------------------------------------------
                                                                                   

consensus_10257#0      CGGGATCAGGCTGTTCCAGTTCGGAATCGACGGTTCCAAGGAGCCCTTTGTGAACATACC 480
consensus_10257#1      ------------------------------------------------------------
                                                                                   

consensus_10257#0      TGAAGATAGAATCCGTGAGGCTCTAAAAGTTGTGCTAGATGTGGCAAATCACCCGGTGCT 540
consensus_10257#1      --------------------------AGTTTGTGCTAGATGTG--CAATCACCCGGTGCT 32
                                                 *  **************   **************

consensus_10257#0      TATTCAC-TGCAAGCGTGGAAAGCATCGAACTGGCTGTGTGGTTGGTTGCTTGAGGAAAT 599
consensus_10257#1      TATTCACATGCAAGCGTGGAAAGCATCGAACTGGCTGTGTG-TTGGTTGCTTGAGGAAAT 91
                       ******* ********************************* ******************

consensus_10257#0      TGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAG 659
consensus_10257#1      TGCAACGCTGGTGCCTAACTTCAATATTTGATGAATATCAGCGCTTTGCTGCTGCCAAAG 151
                       ************************************************************

consensus_10257#0      CAAGAGTATCTGACCTAAGGTTTATGGAACTATTTGATATCTCT-AGTTTAAAGCATTTA 718
consensus_10257#1      CAAGAGTATCTGACCTAAGGTTTATGGAACTATTTGATATCTCTGAGTTTAAAGCATTTA 211
                       ******************************************** ***************

consensus_10257#0      CCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTG 778
consensus_10257#1      CCAGCATCATTCTCATGTTGAGAAAGCAGCACACCCAGAGCAGCCTGTGTGCCAAGATTG 271
                       ************************************************************

consensus_10257#0      GCAATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGTA 838
consensus_10257#1      GCNATTGTCTCTCGGTGACTCTAGAGACCTGTTTATCATAGTAACAAGACTACCTTGGT- 330
                       ** ******************************************************** 

consensus_10257#0      AGAAAACTATCAGTGATACCTTTTAATTGTGTTTTCATCATTATACTACTTCCCAGTACA 898
consensus_10257#1      ------------------------------------------------------------
                                                                                   

consensus_10257#0      TGTAGTCGCAAGTTTAACCTTATCATTTTTGGAGAATAGGTCCCGAGTTGTAGTTGATGT 958
consensus_10257#1      -----------------------------------------CCCGAGTTGTAGTTGATGT 349
                                                                *******************

consensus_10257#0      TAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATTAGTTCAGTGTTTT 1018
consensus_10257#1      TAAAGGGCATAGAAACCGGATCGGTTGCCAATGCAGTTCACTGTATGAGTTCAGTGTTTT 409
                       ********************************************** *************

consensus_10257#0      TCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCA-TTGTTGTTTCTGCGTTAGCAGT 1077
consensus_10257#1      TCAAGCGAATAAGAGGGATGCATCGGGAGCTATACCACTTGTTGTTTCTGCGTTA-CAGT 468
                       ************************************* ***************** ****

consensus_10257#0      ACCAGTATGTATTTTTTTGGCAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCT 1137
consensus_10257#1      ACCAGTATGTATTTTTTTG-CAGTGCATAATTTTTTATATGTTGTAATTATGCTCAATCT 527
                       ******************* ****************************************

consensus_10257#0      GTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGA 1197
consensus_10257#1      GTATATCGAATAGAATCTCAAATTGCAAGGAAAAACCATCATGGCCCTTCAAGCCCTTGA 587
                       ************************************************************

consensus_10257#0      CTGAATGTGTGTAATTGTTCAGTGTTTTAAAGAAGATTA 1236
consensus_10257#1      CTGAAA--------------------------------- 593
                       *****                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)