These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 909 fasta sequence [GCCGCCTCCCCGCGCCGAAACCCTAAAAATCCTCCTCCTCCTCCTCTTCTTCCCCCAAGAATCCTCCACACCATGCGGCCACCGAGGGGCGGCGGCGGCGGGCGCTTCGGAGGCGGAGGCGGCGGGCGGTTCGGCGGCGGTGGCGGCAGGGGTGGCCGCTTCGGTGGCGGCGGCAGGGGGGGCCGCGGCGGCGGCGGCGGGTTCCGCGACGAGGGCCCCCCGGCCGAGGTCGTCGAGGTGTCGACGTTCATGCACGCGTGCGAGGG-GGACGCGGTGACGAAGCTGACGAACGAGAAGGTGCCCTACTTCAACGCGCCCATCTACCTCCAGAACAAGACCCAGATCGGCAAGGTCGACGAGATCTTCGGCCCCATCAACGAATCCCTTTTCTCCATTAAGATGCTGGAGGGGATCATTGCAACTTCATACAGTGAAGGCGATAAGTTCTACATCGACCCCATGAAGCTTTTGCCTCTCTCACGCTTCTTGCCACAGCCAAAGGGCCAAAGTCAAGGAGGGGGCAGAGGTGGTGGCCGT---GGTGGTGGAAGAGGCGGTTTCCGTGGCCGTGGTGGTGGTGGCTTCCGTGGAAGAGGTGCGCCAAGGGGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGGCGGGGCAGATTCTAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATCCTACATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAGCGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATAAAACAAAGTTTTCATTTCTCTTCAGTACAAGTTATGCATTTATAGTTAATCTTTAAATTTACCGAATGCTGATTCTGACTCTTAATGGATGTTATCCTATGA] [+] EMBL AK121986 [GCCGCCTCCCCGCGCCGAAACCCTAAAAATCCTCCTCCTCCTCCTCTTCTTCCCCCAAGAATCCTCCACACCATGCGGCCACCGAGGGGCGGCGGCGGCGGGCGCTTCGGAGGCGGAGGCGGCGGGCGGTTCGGCGGCGGTGGCGGCAGGGGTGGCCGCTTCGGTGGCGGCGGCAGGGGGGGCCGCGGCGGCGGCGGCGGGTTCCGCGACGAGGGCCCCCCGGCCGAGGTCGTCGAGGTGTCGACGTTCATGCACGCGTGCGAGGG GGACGCGGTGACGAAGCTGACGAACGAGAAGGTGCCCTACTTCAACGCGCCCATCTACCTCCAGAACAAGACCCAGATCGGCAAGGTCGACGAGATCTTCGGCCCCATCAACGAATCCCTTTTCTCCATTAAGATGCTGGAGGGGATCATTGCAACTTCATACAGTGAAGGCGATAAGTTCTACATCGACCCCATGAAGCTTTTGCCTCTCTCACGCTTCTTGCCACAGCCAAAGGGCCAAAGTCAAGGAGGGGGCAGAGGTGGTGGCCGT GGTGGTGGAAGAGGCGGTTTCCGTGGCCGTGGTGGTGGTGGCTTCCGTGGAAGAGGTGCGCCAAGGGGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGGCGGGGCAGATTCTAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATCCTACATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAGCGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATAAAACAAAGTTTTCATTTCTCTTCAGTACAAGTTATGCATTTATAGTTAATCTTTAAATTTACCGAATGCTGATTCTGACTCTTAATGGATGTTATCCTATGA] [+] EMBL AU163647 [ CCTCCTCCTCCTCTTCTTCCCCCAAGANTCCTCCACACCATGCGGCCACCGAGGGGCGGCGGCGGCGGGCGCTTCGGAGGCGGAGGCGGCGGGCGGTTCGGCGGCGGTGGCGGCAGGGGTGGCCGCTTCGGTGGCGGNGGCAGGGGGGGCCGCGGCGGCGCGGGCGGGTTCCGCNACGAGGGCCCCCCGGCCGAGGTCGTCNAGGTGTCGACGTTCATGCACGCTTGCAAGGGNGGACGCGGTGACGAAGCTGACGAACGAAAAGGTGCCCTACTTCAACGCGCCCATCTACCTCCAGAACAAGACCCAGATCGGCAAGGTCGACGAGATTTTCGGCCCCATCAACGAATCCCTTTT ] [+] EMBL CA753583 [ ttGTCGAGGTGTCGACGTTCATGCACGCGTGCGAGGG GGACGCGGTGACGAAGCTGACGAACGAGAAGGTGCCCTACTTCAACGCGCCCATCTACCTCCAGAACAAGACCCAGATCGGCAAGGTCGACGAGATCTTCGGCCCCATCAACGAATCCCTTTTCTCCATTAAGATGCTGGAGGGGATCATTGCAACTTCATACAGTGAAGGCGATAAGTTCTACATCGACCCCATGAAACTTCTGCCTCTCTCACGCTTCTTGCCACAGCCAAAGGGCCAAAGTCAAGGAGGGGGCAGAGGTGGTGGCCGTGGCGGTGGTGGAAGAGGTGGTGGCCGTGGCCGTGGTGGTGGTGGCTTCCGTGGAAGAGGTGCACCAAGGGGACGTGGTGGA CCTAGGGGTGGAGGTCGTGGTTTCAGAGGGCGAGGCAGATNCTAGTTTCTTAGCTTAAGACATGGTGTTTGTAAAAACATCATATCCTACATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATATTAAGTCAGCAGAGCGCTTCCA CT TTCATGTGTGGAAG TGGATCCCTAT GGACAAAG TTTCATTTCTC TCAATCCA TTATGC ] [+] EMBL OS0189A [ GAGGGGATCATTGCAACTTCATACAGTGAAGGCGATAAGTTCTACATCGACCCCATGAAGCTTTTGCCTCTCTCACGCTTCTTGCCACAGCCAAAGGGCCAAAGTCAAGGAGGGGGCAGAGGTGGTGGCCGT GGTGGTGGAAGAGGCGGTTTCCGTGGCCGTGGTGGTGGTGGCTTCCGTGGAAGAGGTGCGCCAAGGGGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGGCGGGGCAGATTCTAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATNCTACATGCCC ] consensusID : consensus_10272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 582 fasta sequence [AANAAAAAAACCACCCCCTTAGGGNCGAATTGGNTANCCGGNACCANCNCCCACNAAGANNAAAACCCACCCNCACCCAAAAACACCNNAAAANNACANACACNGACACCNNAATACAAAAAAAAAAACCCNCNNCTACATCGACCCCATGAAGCTTTTGCCCTCTCTCACGCTTCTTNCCACAGCCAAAGGGCCAAAGTCCAAGGAGGGGGCCAGAGGTGGTGNCCGTGGTGGTGGAAGAGGCCGGTTTCCCGTGGNCCGTGGTGGTGGTGGCTTCCCGTGGAAGAGGTGCCGCCAAGGGGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGGCGGGGCAGATTCTAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATCCTACATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAGCGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATGGAACAAAGTTTTCATTTCTCTTCAGTACAAGTTATGCATTTATAGTTAATCTTTAAATTTACCGAAAAAAAAAAAAAA] [+] EMBL AU089694 [AANAAAAAAACCACCCCCTTAGGGNCGAATTGGNTANCCGGNACCANCNCCCACNAAGANNAAAACCCACCCNCACCCAAAAACACCNNAAAANNACANACACNGACACCNNAATACAAAAAAAAAAACCCNCNNCTACATCGACCCCATGAAGCTTTTGCCCTCTCTCACGCTTCTTNCCACAGCCAAAGGGCCAAAGTCCAAGGAGGGGGCCAGAGGTGGTGNCCGTGGTGGTGGAAGAGGCCGGTTTCCCGTGGNCCGTGGTGGTGGTGGCTTCCCGTGGAAGAGGTGCCGCCAAGGGGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGGCGGGGCAGATTCTAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATCCTACATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAGCGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATGGAACAAAGTTTTCATTTCTCTTCAGTACAAGTTATGCATTTATAGTTAATCTTTAAATTTACCGAAAAAAAAAAAAAA] [-] EMBL AW069978 [ GCCGAGGTACCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGGCGGGGCAGATTCTAGTTTCTTAGCTTAAGACCCGGTGTTTGTTGAGACATCATATCCTACATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAGCGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATGGAACAAAGTTTTCATTTC ] [+] EMBL AU165769 [ TTCTTGTAGCCTGATGTTAAGTTAGCAGAGCGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATGGAACAAAGTTTTCATTTCTCTTCAGTACAAGTTATGCATTTATAGTTAATCTTTAAAaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10272#0 GCCGCCTCCCCGCGCCGAAACCCTAAAAATCCTCCTCCTCCTCCTCTTCTTCCCCCAAGA 60 consensus_10272#1 ------------------------------------------------------------ consensus_10272#0 ATCCTCCACACCATGCGGCCACCGAGGGGCGGCGGCGGCGGGCGCTTCGGAGGCGGAGGC 120 consensus_10272#1 ------------------------------------------------------------ consensus_10272#0 GGCGGGCGGTTCGGCGGCGGTGGCGGCAGGGGTGGCCGCTTCGGTGGCGGCGGCAGGGGG 180 consensus_10272#1 ------------------------------------------------------------ consensus_10272#0 GGCCGCGGCGGCGGCGGCGGGTTCCGCGACGAGGGCCCCCCGGCCGAGGTCGTCGAGGTG 240 consensus_10272#1 ------------------------------------------------------------ consensus_10272#0 TCGACGTTCATGCACGCGTGCGAGGGGGACGCGGTGACGAAGCTGACGAACGAGAAGGTG 300 consensus_10272#1 ------------------------------------------------------------ consensus_10272#0 CCCTACTTCAACGCGCCCATCTACCTCCAGAACAAGACCCAGATCGGCAAGGTCGACGAG 360 consensus_10272#1 ----------AANAAAAAAACCACCCCC----TTAGGGNCGAATTGGNTAN-CCGGNACC 45 * * * *** ** ** * ** ** * ** consensus_10272#0 ATCTTCGGCCCCATCAACGAATCCCTTTTCTCCATTAAGATGCTGGAGGGG--ATCATTG 418 consensus_10272#1 ANCNCCCACNAAGANNAAAACCCACCCNCACCCAAAAACACCNNAAAANNACANACACNG 105 * * * * * * * * *** ** * * ** * consensus_10272#0 -CAACTTCATACAGTGAAGGCGATAAG-TTCTACATCGACCCCATGAAGCTTTTGCC-TC 475 consensus_10272#1 ACACCNNAATACAAAAAAAAAAACCCNCNNCTACATCGACCCCATGAAGCTTTTGCCCTC 165 ** * ***** ** * *************************** ** consensus_10272#0 TCTCACGCTTCTTGCCACAGCCAAAGGGCCAAAGTC-AAGGAGGGGGC-AGAGGTGGTGG 533 consensus_10272#1 TCTCACGCTTCTTNCCACAGCCAAAGGGCCAAAGTCCAAGGAGGGGGCCAGAGGTGGTGN 225 ************* ********************** *********** ********** consensus_10272#0 CCGTGGTGGTGGAAGAGGCGG--TTTCCGTGGCC-GTGGTGGTGGTGGCTTCC-GTGGAA 589 consensus_10272#1 CCGTGGTGGTGGAAGAGGCCGGTTTCCCGTGGNCCGTGGTGGTGGTGGCTTCCCGTGGAA 285 ******************* * ** ****** * ****************** ****** consensus_10272#0 GAGGTGC-GCCAAGGGGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGG 648 consensus_10272#1 GAGGTGCCGCCAAGGGGCCGTGGTGGACCTCCTAGGGGTGGAGGTCGTGGTTTCAGGGGG 345 ******* **************************************************** consensus_10272#0 CGGGGCAGATTCTAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATCCTAC 708 consensus_10272#1 CGGGGCAGATTCTAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATCCTAC 405 ************************************************************ consensus_10272#0 ATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAG 768 consensus_10272#1 ATGCCCTCTGCTCAATTGAAAACATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAG 465 ************************************************************ consensus_10272#0 CGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATAAAACAAAGTTTTCATTTCTCT 828 consensus_10272#1 CGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATGGAACAAAGTTTTCATTTCTCT 525 ************************************** ******************** consensus_10272#0 TCAGTACAAGTTATGCATTTATAGTTAATCTTTAAATTTACCGAATGCTGATTCTGACTC 888 consensus_10272#1 TCAGTACAAGTTATGCATTTATAGTTAATCTTTAAATTTACCGAAAAAAAAAAAAAA--- 582 ********************************************* * * consensus_10272#0 TTAATGGATGTTATCCTATGA 909 consensus_10272#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||